Tamberlyn Bieri

Summary

Affiliation: Washington University School of Medicine
Country: USA

Publications

  1. pmc WormBase: new content and better access
    Tamberlyn Bieri
    Genome Sequencing Center, Washington University School of Medicine, St Louis, MO 63108, USA
    Nucleic Acids Res 35:D506-10. 2007
  2. doi request reprint WormBase 2014: new views of curated biology
    Todd W Harris
    Informatics and Bio computing Platform, Ontario Institute for Cancer Research, Toronto, ON M5G0A3, Canada, Genome Sequencing Center, Washington University, School of Medicine, St Louis, MO 63108, USA, Division of Biology and Biological Engineering 156 29, California Institute of Technology, Pasadena, CA 91125, USA, European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK, Department of Genetics Campus, Washington University School of Medicine, St Louis, MO 63110, USA, Genetics Unit, Department of Biochemistry, University of Oxford, Oxford OX1 3QU, UK, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK and Howard Hughes Medical Institute, California Institute of Technology, Pasadena, CA 91125, USA
    Nucleic Acids Res 42:D789-93. 2014
  3. pmc Identification of genes subject to positive selection in uropathogenic strains of Escherichia coli: a comparative genomics approach
    Swaine L Chen
    Center for Genome Sciences, Washington University School of Medicine, St Louis, MO 63110, USA
    Proc Natl Acad Sci U S A 103:5977-82. 2006
  4. pmc WormBase: a cross-species database for comparative genomics
    Todd W Harris
    Cold Spring Harbor Laboratory, 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA
    Nucleic Acids Res 31:133-7. 2003
  5. pmc WormBase: a multi-species resource for nematode biology and genomics
    Todd W Harris
    Cold Spring Harbor Laboratory, 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA
    Nucleic Acids Res 32:D411-7. 2004
  6. pmc WormBase: a comprehensive data resource for Caenorhabditis biology and genomics
    Nansheng Chen
    Cold Spring Harbor Laboratory, 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA
    Nucleic Acids Res 33:D383-9. 2005
  7. pmc WormBase: better software, richer content
    Erich M Schwarz
    Division of Biology, 156 29 California Institute of Technology, Pasadena, CA, 91125, USA
    Nucleic Acids Res 34:D475-8. 2006
  8. pmc WormBase 2007
    Anthony Rogers
    Sanger Institute, Wellcome Trust Genome Campus Hinxton, Cambridgeshire CB10 1SA, UK
    Nucleic Acids Res 36:D612-7. 2008

Collaborators

  • Paul W Sternberg
  • Jian Xu
  • Elaine R Mardis
  • Thomas M Hooton
  • Jeffrey I Gordon
  • Swaine L Chen
  • Nansheng Chen
  • Igor Antoshechkin
  • Erich M Schwarz
  • L Stein
  • Todd W Harris
  • Raymond Lee
  • Ranjana Kishore
  • John Spieth
  • Hans Michael Muller
  • Juancarlos Chan
  • Anthony Rogers
  • Kimberly Van Auken
  • Cecilia Nakamura
  • Paul Davis
  • Philip Ozersky
  • Wen J Chen
  • Richard Durbin
  • Andrei Petcherski
  • Karen Yook
  • Mary Ann Tuli
  • Daniel Wang
  • Gary Williams
  • Xiaodong Wang
  • Gary Schindelman
  • Darin Blasiar
  • Carol Bastiani
  • Keith Bradnam
  • Eimear Kenny
  • Fiona Cunningham
  • Daniel Lawson
  • Chao Kung Chen
  • Paul Kersey
  • Michael Paulini
  • Matthew Berriman
  • J D Wong
  • Yuling Li
  • Daniela Raciti
  • Joachim Baran
  • Tim Schedl
  • Christian Grove
  • Kevin Howe
  • James Done
  • Jonathan Hodgkin
  • Abigail Cabunoc
  • Sheldon McKay
  • Tristan J Fiedler
  • Payan Canaran
  • Will Spooner
  • Jolene Fernandes
  • Michael Han
  • Aniko Sabo
  • Marcela Tello-Ruiz
  • Qinghua Wang
  • Gudmundur Thorisson
  • Darin Blasier
  • Allen Day
  • Wen Chen

Detail Information

Publications8

  1. pmc WormBase: new content and better access
    Tamberlyn Bieri
    Genome Sequencing Center, Washington University School of Medicine, St Louis, MO 63108, USA
    Nucleic Acids Res 35:D506-10. 2007
    ..Access to and searching WormBase has become more dependable and flexible via multiple mirror sites and indexing through Google...
  2. doi request reprint WormBase 2014: new views of curated biology
    Todd W Harris
    Informatics and Bio computing Platform, Ontario Institute for Cancer Research, Toronto, ON M5G0A3, Canada, Genome Sequencing Center, Washington University, School of Medicine, St Louis, MO 63108, USA, Division of Biology and Biological Engineering 156 29, California Institute of Technology, Pasadena, CA 91125, USA, European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK, Department of Genetics Campus, Washington University School of Medicine, St Louis, MO 63110, USA, Genetics Unit, Department of Biochemistry, University of Oxford, Oxford OX1 3QU, UK, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK and Howard Hughes Medical Institute, California Institute of Technology, Pasadena, CA 91125, USA
    Nucleic Acids Res 42:D789-93. 2014
    ..Finally, we describe some of the features and tools of the new WormBase Web site that help users better find and explore data of interest. ..
  3. pmc Identification of genes subject to positive selection in uropathogenic strains of Escherichia coli: a comparative genomics approach
    Swaine L Chen
    Center for Genome Sciences, Washington University School of Medicine, St Louis, MO 63110, USA
    Proc Natl Acad Sci U S A 103:5977-82. 2006
    ..coli isolates from patients with UTI. These studies outline a computational approach that may be broadly applicable for studying strain-specific adaptation and pathogenesis in other bacteria...
  4. pmc WormBase: a cross-species database for comparative genomics
    Todd W Harris
    Cold Spring Harbor Laboratory, 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA
    Nucleic Acids Res 31:133-7. 2003
    ..elegans researchers, to include researchers wishing to explore problems in functional and comparative genomics within the context of a powerful genetic system...
  5. pmc WormBase: a multi-species resource for nematode biology and genomics
    Todd W Harris
    Cold Spring Harbor Laboratory, 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA
    Nucleic Acids Res 32:D411-7. 2004
    ..These advances continue to increase the utility of WormBase for C.elegans researchers, as well as for those researchers exploring problems in functional and comparative genomics in the context of a powerful genetic system...
  6. pmc WormBase: a comprehensive data resource for Caenorhabditis biology and genomics
    Nansheng Chen
    Cold Spring Harbor Laboratory, 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA
    Nucleic Acids Res 33:D383-9. 2005
    ..Internally, we have restructured the database models to rationalize the representation of genes and to prepare the system to accept the genome sequences of three additional Caenorhabditis species over the coming year...
  7. pmc WormBase: better software, richer content
    Erich M Schwarz
    Division of Biology, 156 29 California Institute of Technology, Pasadena, CA, 91125, USA
    Nucleic Acids Res 34:D475-8. 2006
    ....
  8. pmc WormBase 2007
    Anthony Rogers
    Sanger Institute, Wellcome Trust Genome Campus Hinxton, Cambridgeshire CB10 1SA, UK
    Nucleic Acids Res 36:D612-7. 2008
    ..Improved search and display tools, wider cross-species comparisons and extended ontologies are some of the features that will help scientists extend their research and take advantage of other nematode species genome sequences...