Alice R Wattam

Summary

Affiliation: Virginia Polytechnic Institute and State University
Country: USA

Publications

  1. pmc Analysis of ten Brucella genomes reveals evidence for horizontal gene transfer despite a preferred intracellular lifestyle
    Alice R Wattam
    Virginia Bioinformatics Institute, Virginia Tech, Blacksburg, VA 24061, USA
    J Bacteriol 191:3569-79. 2009
  2. pmc Comparative genomics of early-diverging Brucella strains reveals a novel lipopolysaccharide biosynthesis pathway
    Alice R Wattam
    Virginia Bioinformatics Institute, Virginia Tech, Blacksburg, Virginia, USA
    MBio 3:e00246-11. 2012
  3. pmc Comparative phylogenomics and evolution of the Brucellae reveal a path to virulence
    Alice R Wattam
    Virginia Bioinformatics Institute, Virginia Tech, Blacksburg, Virginia, USA
    J Bacteriol 196:920-30. 2014
  4. pmc Comparative genomics of early-diverging Brucella strains reveals a novel lipopolysaccharide biosynthesis pathway
    Alice R Wattam
    Virginia Bioinformatics Institute, Virginia Tech, Blacksburg, Virginia, USA
    MBio 3:e00246-12. 2012
  5. pmc The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
    Ross Overbeek
    Fellowship for Interpretation of Genomes, Burr Ridge, IL 60527, USA, Mathematics and Computer Science Division, Argonne National Laboratory, Argonne, IL 60439, USA, Computation Institute, University of Chicago, Chicago, IL 60637, USA, Department of Microbiology, University of Illinois at Urbana Champaign, Urbana, IL 61801, USA, Department of Computer Science, San Diego State University, San Diego, CA 92182, USA, Virginia Bioinformatics Institute, Virginia Tech, Blacksburg, VA 24060, USA, Computing, Environment and Life Sciences, Argonne National Laboratory, Argonne, IL 60439, USA and Department of Computer Science, University of Chicago, Chicago, IL 60637, USA
    Nucleic Acids Res 42:D206-14. 2014
  6. pmc PATRIC, the bacterial bioinformatics database and analysis resource
    Alice R Wattam
    Virginia Bioinformatics Institute, Virginia Tech, Blacksburg, VA 24060, USA, Computation Institute, University of Chicago, Chicago, IL 60637, USA, Mathematics and Computer Science Division, Argonne National Laboratory, Argonne, IL 60637, USA, Grado Department of Industrial and Systems Engineering, Virginia Tech, Blacksburg, VA 24060, USA, Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, MD 21201, USA, Fellowship for Interpretation of Genomes, Burr Ridge, IL 60527, USA, Computing, Environment, and Life Sciences, Argonne National Laboratory, Argonne, IL 60637, USA and Nestlé Institute of Health Sciences SA, Campus EPFL, Quartier de l Innovation, Lausanne, Switzerland
    Nucleic Acids Res 42:D581-91. 2014

Collaborators

Detail Information

Publications6

  1. pmc Analysis of ten Brucella genomes reveals evidence for horizontal gene transfer despite a preferred intracellular lifestyle
    Alice R Wattam
    Virginia Bioinformatics Institute, Virginia Tech, Blacksburg, VA 24061, USA
    J Bacteriol 191:3569-79. 2009
    ..The SARs contain many genes, including those involved in O-polysaccharide synthesis and type IV secretion, which if mutated or absent significantly affect the ability of Brucella to survive intracellularly in the infected host...
  2. pmc Comparative genomics of early-diverging Brucella strains reveals a novel lipopolysaccharide biosynthesis pathway
    Alice R Wattam
    Virginia Bioinformatics Institute, Virginia Tech, Blacksburg, Virginia, USA
    MBio 3:e00246-11. 2012
    ..The results demonstrate the existence of a group of early-diverging brucellae with traits that depart significantly from those of the Brucella species described thus far...
  3. pmc Comparative phylogenomics and evolution of the Brucellae reveal a path to virulence
    Alice R Wattam
    Virginia Bioinformatics Institute, Virginia Tech, Blacksburg, Virginia, USA
    J Bacteriol 196:920-30. 2014
    ....
  4. pmc Comparative genomics of early-diverging Brucella strains reveals a novel lipopolysaccharide biosynthesis pathway
    Alice R Wattam
    Virginia Bioinformatics Institute, Virginia Tech, Blacksburg, Virginia, USA
    MBio 3:e00246-12. 2012
    ..The results demonstrate the existence of a group of early-diverging brucellae with traits that depart significantly from those of the Brucella species described thus far...
  5. pmc The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
    Ross Overbeek
    Fellowship for Interpretation of Genomes, Burr Ridge, IL 60527, USA, Mathematics and Computer Science Division, Argonne National Laboratory, Argonne, IL 60439, USA, Computation Institute, University of Chicago, Chicago, IL 60637, USA, Department of Microbiology, University of Illinois at Urbana Champaign, Urbana, IL 61801, USA, Department of Computer Science, San Diego State University, San Diego, CA 92182, USA, Virginia Bioinformatics Institute, Virginia Tech, Blacksburg, VA 24060, USA, Computing, Environment and Life Sciences, Argonne National Laboratory, Argonne, IL 60439, USA and Department of Computer Science, University of Chicago, Chicago, IL 60637, USA
    Nucleic Acids Res 42:D206-14. 2014
    ..To date, >12 000 users worldwide have annotated >60 000 distinct genomes using RAST. Here we describe the interconnectedness of the SEED database and RAST, the RAST annotation pipeline and updates to both resources. ..
  6. pmc PATRIC, the bacterial bioinformatics database and analysis resource
    Alice R Wattam
    Virginia Bioinformatics Institute, Virginia Tech, Blacksburg, VA 24060, USA, Computation Institute, University of Chicago, Chicago, IL 60637, USA, Mathematics and Computer Science Division, Argonne National Laboratory, Argonne, IL 60637, USA, Grado Department of Industrial and Systems Engineering, Virginia Tech, Blacksburg, VA 24060, USA, Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, MD 21201, USA, Fellowship for Interpretation of Genomes, Burr Ridge, IL 60527, USA, Computing, Environment, and Life Sciences, Argonne National Laboratory, Argonne, IL 60637, USA and Nestlé Institute of Health Sciences SA, Campus EPFL, Quartier de l Innovation, Lausanne, Switzerland
    Nucleic Acids Res 42:D581-91. 2014
    ..All the data and integrated analysis and visualization tools are freely available. This manuscript describes updates to the PATRIC since its initial report in the 2007 NAR Database Issue...