Chunhong Mao

Summary

Affiliation: Virginia Polytechnic Institute and State University
Country: USA

Publications

  1. pmc Overview of the ID, EPI and REL tasks of BioNLP Shared Task 2011
    Sampo Pyysalo
    School of Computer Science, University of Manchester, Manchester, UK
    BMC Bioinformatics 13:S2. 2012
  2. ncbi request reprint NodMutDB: a database for genes and mutants involved in symbiosis
    Chunhong Mao
    Virginia Bioinformatics Institute, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, USA
    Bioinformatics 21:2927-9. 2005
  3. pmc PATRIC, the bacterial bioinformatics database and analysis resource
    Alice R Wattam
    Virginia Bioinformatics Institute, Virginia Tech, Blacksburg, VA 24060, USA, Computation Institute, University of Chicago, Chicago, IL 60637, USA, Mathematics and Computer Science Division, Argonne National Laboratory, Argonne, IL 60637, USA, Grado Department of Industrial and Systems Engineering, Virginia Tech, Blacksburg, VA 24060, USA, Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, MD 21201, USA, Fellowship for Interpretation of Genomes, Burr Ridge, IL 60527, USA, Computing, Environment, and Life Sciences, Argonne National Laboratory, Argonne, IL 60637, USA and Nestlé Institute of Health Sciences SA, Campus EPFL, Quartier de l Innovation, Lausanne, Switzerland
    Nucleic Acids Res 42:D581-91. 2014
  4. pmc PATRIC: the comprehensive bacterial bioinformatics resource with a focus on human pathogenic species
    Joseph J Gillespie
    Virginia Bioinformatics Institute at Virginia Tech, Blacksburg, Virginia 24061, USA
    Infect Immun 79:4286-98. 2011
  5. ncbi request reprint Functional assignment of Mycobacterium tuberculosis proteome revealed by genome-scale fold-recognition
    Chunhong Mao
    Virginia Bioinformatics Institute at Virginia Tech, Blacksburg, VA 24061, USA
    Tuberculosis (Edinb) 93:40-6. 2013
  6. pmc Identification of new genes in Sinorhizobium meliloti using the Genome Sequencer FLX system
    Chunhong Mao
    Virginia Bioinformatics Institute, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, USA
    BMC Microbiol 8:72. 2008
  7. pmc The changing tails of a novel short interspersed element in Aedes aegypti: genomic evidence for slippage retrotransposition and the relationship between 3' tandem repeats and the poly(dA) tail
    Zhijian Tu
    Department of Biochemistry, Virginia Polytechnic Institute and State University, Blacksburg, Virginia 24061, USA
    Genetics 168:2037-47. 2004
  8. ncbi request reprint ESTAP--an automated system for the analysis of EST data
    Chunhong Mao
    Virginia Bioinformatics Institute, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, USA
    Bioinformatics 19:1720-2. 2003
  9. ncbi request reprint Expressed sequence tags from phytophthora sojae reveal genes specific to development and infection
    Trudy A Torto-Alalibo
    Virginia Bioinformatics Institute, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, USA
    Mol Plant Microbe Interact 20:781-93. 2007
  10. ncbi request reprint Variations on the tmRNA gene
    Chunhong Mao
    Virginia Bioinformatics Institute, Virginia Tech, Blacksburg, VA 24061, USA
    RNA Biol 6:355-61. 2009

Detail Information

Publications13

  1. pmc Overview of the ID, EPI and REL tasks of BioNLP Shared Task 2011
    Sampo Pyysalo
    School of Computer Science, University of Manchester, Manchester, UK
    BMC Bioinformatics 13:S2. 2012
    ..The manually annotated corpora, supporting resources, and evaluation tools for all tasks are available from http://www.bionlp-st.org and the tasks continue as open challenges for all interested parties...
  2. ncbi request reprint NodMutDB: a database for genes and mutants involved in symbiosis
    Chunhong Mao
    Virginia Bioinformatics Institute, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, USA
    Bioinformatics 21:2927-9. 2005
    ..NodMutDB brings together new studies and existing mutant-based literature to facilitate our understanding of how genes function in symbiotic processes in both Rhizobia and their host plants...
  3. pmc PATRIC, the bacterial bioinformatics database and analysis resource
    Alice R Wattam
    Virginia Bioinformatics Institute, Virginia Tech, Blacksburg, VA 24060, USA, Computation Institute, University of Chicago, Chicago, IL 60637, USA, Mathematics and Computer Science Division, Argonne National Laboratory, Argonne, IL 60637, USA, Grado Department of Industrial and Systems Engineering, Virginia Tech, Blacksburg, VA 24060, USA, Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, MD 21201, USA, Fellowship for Interpretation of Genomes, Burr Ridge, IL 60527, USA, Computing, Environment, and Life Sciences, Argonne National Laboratory, Argonne, IL 60637, USA and Nestlé Institute of Health Sciences SA, Campus EPFL, Quartier de l Innovation, Lausanne, Switzerland
    Nucleic Acids Res 42:D581-91. 2014
    ..All the data and integrated analysis and visualization tools are freely available. This manuscript describes updates to the PATRIC since its initial report in the 2007 NAR Database Issue...
  4. pmc PATRIC: the comprehensive bacterial bioinformatics resource with a focus on human pathogenic species
    Joseph J Gillespie
    Virginia Bioinformatics Institute at Virginia Tech, Blacksburg, Virginia 24061, USA
    Infect Immun 79:4286-98. 2011
    ..Finally, a summary of PATRIC's outreach activities, collaborative endeavors, and future research directions is provided...
  5. ncbi request reprint Functional assignment of Mycobacterium tuberculosis proteome revealed by genome-scale fold-recognition
    Chunhong Mao
    Virginia Bioinformatics Institute at Virginia Tech, Blacksburg, VA 24061, USA
    Tuberculosis (Edinb) 93:40-6. 2013
    ....
  6. pmc Identification of new genes in Sinorhizobium meliloti using the Genome Sequencer FLX system
    Chunhong Mao
    Virginia Bioinformatics Institute, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, USA
    BMC Microbiol 8:72. 2008
    ..meliloti, and search for new bacterial genes missed in the previous genome annotation. This is the first report of sequencing a bacterial transcriptome using the pyrosequencing technology...
  7. pmc The changing tails of a novel short interspersed element in Aedes aegypti: genomic evidence for slippage retrotransposition and the relationship between 3' tandem repeats and the poly(dA) tail
    Zhijian Tu
    Department of Biochemistry, Virginia Polytechnic Institute and State University, Blacksburg, Virginia 24061, USA
    Genetics 168:2037-47. 2004
    ....
  8. ncbi request reprint ESTAP--an automated system for the analysis of EST data
    Chunhong Mao
    Virginia Bioinformatics Institute, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, USA
    Bioinformatics 19:1720-2. 2003
    ..ESTAP provides for easy viewing of the original and cleansed data, as well as the analysis results via a Web browser. It also allows the data owner to submit selected sequences to dbEST in a semi-automated fashion...
  9. ncbi request reprint Expressed sequence tags from phytophthora sojae reveal genes specific to development and infection
    Trudy A Torto-Alalibo
    Virginia Bioinformatics Institute, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, USA
    Mol Plant Microbe Interact 20:781-93. 2007
    ..Sequences identified with putative roles in pathogenesis included avirulence homologs possessing the RxLR motif, elicitins, and hydrolytic enzymes. This large collection of P. sojae ESTs will serve as a valuable public genomic resource...
  10. ncbi request reprint Variations on the tmRNA gene
    Chunhong Mao
    Virginia Bioinformatics Institute, Virginia Tech, Blacksburg, VA 24061, USA
    RNA Biol 6:355-61. 2009
    ....
  11. pmc Integration and visualization of host-pathogen data related to infectious diseases
    Timothy Driscoll
    Virginia Bioinformatics Institute, Virginia Tech, Blacksburg, VA 24061, USA
    Bioinformatics 27:2279-87. 2011
    ....
  12. pmc Analysis of tall fescue ESTs representing different abiotic stresses, tissue types and developmental stages
    M A Rouf Mian
    Forage Improvement Division, The Samuel Roberts Noble Foundation, 2510 Sam Noble Parkway, Ardmore, OK 73402, USA
    BMC Plant Biol 8:27. 2008
    ..The results of inter-library and library-specific in silico expression analyses of these ESTs are also reported...
  13. pmc Genome sequence of Aedes aegypti, a major arbovirus vector
    Vishvanath Nene
    Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA
    Science 316:1718-23. 2007
    ..An increase in genes encoding odorant binding, cytochrome P450, and cuticle domains relative to An. gambiae suggests that members of these protein families underpin some of the biological differences between the two mosquito species...