Roderick V Jensen

Summary

Affiliation: Virginia Polytechnic Institute and State University
Country: USA

Publications

  1. pmc Differentially expressed alternatively spliced genes in malignant pleural mesothelioma identified using massively parallel transcriptome sequencing
    Lingsheng Dong
    The Thoracic Surgery Oncology Laboratory and Division of Thoracic Surgery, Brigham and Women s Hospital, Harvard Medical School, Boston, MA, USA
    BMC Med Genet 10:149. 2009
  2. pmc Gene expression and isoform variation analysis using Affymetrix Exon Arrays
    Amandine Bemmo
    Universite de Montreal, Montreal, QC, Canada
    BMC Genomics 9:529. 2008
  3. pmc The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies
    Leming Shi
    National Center for Toxicological Research, US Food and Drug Administration, 3900 NCTR Road, Jefferson, AR 72079, USA
    BMC Bioinformatics 9:S10. 2008
  4. pmc Transcriptome sequencing of the Microarray Quality Control (MAQC) RNA reference samples using next generation sequencing
    Shrinivasrao P Mane
    Department of Biological Sciences, Virginia Tech, Blacksburg, VA 24061, USA
    BMC Genomics 10:264. 2009
  5. pmc The genome of woodland strawberry (Fragaria vesca)
    Vladimir Shulaev
    Department of Biological Sciences, University of North Texas, Denton, Texas, USA
    Nat Genet 43:109-16. 2011
  6. pmc Genomic comparison between a virulent type A1 strain of Francisella tularensis and its attenuated O-antigen mutant
    Thero Modise
    Department of Biological Sciences, Virginia Polytechnic Institute and State University, Blacksburg, Virginia, USA
    J Bacteriol 194:2775-6. 2012
  7. pmc Identification of new genes in Sinorhizobium meliloti using the Genome Sequencer FLX system
    Chunhong Mao
    Virginia Bioinformatics Institute, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, USA
    BMC Microbiol 8:72. 2008

Collaborators

Detail Information

Publications7

  1. pmc Differentially expressed alternatively spliced genes in malignant pleural mesothelioma identified using massively parallel transcriptome sequencing
    Lingsheng Dong
    The Thoracic Surgery Oncology Laboratory and Division of Thoracic Surgery, Brigham and Women s Hospital, Harvard Medical School, Boston, MA, USA
    BMC Med Genet 10:149. 2009
    ..We hypothesized that alternative splicing profiles might be detected in the sequencing data for the expressed genes in these samples...
  2. pmc Gene expression and isoform variation analysis using Affymetrix Exon Arrays
    Amandine Bemmo
    Universite de Montreal, Montreal, QC, Canada
    BMC Genomics 9:529. 2008
    ..Here, we use the well studied Microarray Quality Control (MAQC) dataset to benchmark the Affymetrix Exon Array, and compare it to two other popular platforms: Illumina, and Affymetrix U133...
  3. pmc The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies
    Leming Shi
    National Center for Toxicological Research, US Food and Drug Administration, 3900 NCTR Road, Jefferson, AR 72079, USA
    BMC Bioinformatics 9:S10. 2008
    ..The resultant variety of existing and emerging methods exacerbates confusion and continuing debate in the microarray community on the appropriate choice of methods for identifying reliable DEG lists...
  4. pmc Transcriptome sequencing of the Microarray Quality Control (MAQC) RNA reference samples using next generation sequencing
    Shrinivasrao P Mane
    Department of Biological Sciences, Virginia Tech, Blacksburg, VA 24061, USA
    BMC Genomics 10:264. 2009
    ..As a preliminary evaluation of these promising technologies, we performed deep sequencing of cDNA synthesized from the Microarray Quality Control (MAQC) reference RNA samples using Roche's 454 Genome Sequencer FLX...
  5. pmc The genome of woodland strawberry (Fragaria vesca)
    Vladimir Shulaev
    Department of Biological Sciences, University of North Texas, Denton, Texas, USA
    Nat Genet 43:109-16. 2011
    ..New phylogenetic analysis of 154 protein-coding genes suggests that assignment of Populus to Malvidae, rather than Fabidae, is warranted...
  6. pmc Genomic comparison between a virulent type A1 strain of Francisella tularensis and its attenuated O-antigen mutant
    Thero Modise
    Department of Biological Sciences, Virginia Polytechnic Institute and State University, Blacksburg, Virginia, USA
    J Bacteriol 194:2775-6. 2012
    ..Compared to the wild type, the mutant strain had 45 point mutations and a 75.9-kb duplicated region that had not been previously observed in Francisella species...
  7. pmc Identification of new genes in Sinorhizobium meliloti using the Genome Sequencer FLX system
    Chunhong Mao
    Virginia Bioinformatics Institute, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, USA
    BMC Microbiol 8:72. 2008
    ..meliloti, and search for new bacterial genes missed in the previous genome annotation. This is the first report of sequencing a bacterial transcriptome using the pyrosequencing technology...