Qi Liu

Summary

Affiliation: Vanderbilt University
Country: USA

Publications

  1. pmc RNA-seq data analysis at the gene and CDS levels provides a comprehensive view of transcriptome responses induced by 4-hydroxynonenal
    Qi Liu
    Department of Biomedical Informatics, Vanderbilt University School of Medicine, Nashville, TN 37232, USA
    Mol Biosyst 9:3036-46. 2013
  2. pmc Steps to ensure accuracy in genotype and SNP calling from Illumina sequencing data
    Qi Liu
    Center for Quantitative Sciences, Vanderbilt University School of Medicine, Nashville, TN 37232, USA
    BMC Genomics 13:S8. 2012
  3. pmc Next generation sequencing in cancer research and clinical application
    Derek Shyr
    Center for Quantitative Sciences, Vanderbilt University School of Medicine, 37232, Nashville, TN, USA
    Biol Proced Online 15:4. 2013
  4. ncbi request reprint Proteogenomic characterization of human colon and rectal cancer
    Bing Zhang
    1 Department of Biomedical Informatics, Vanderbilt University School of Medicine, Nashville, Tennessee 37232, USA 2 Department of Cancer Biology, Vanderbilt University School of Medicine, Nashville, Tennessee 37232, USA
    Nature 513:382-7. 2014
  5. ncbi request reprint Leveraging the complementary nature of RNA-Seq and shotgun proteomics data
    Xiaojing Wang
    Department of Biomedical Informatics, Vanderbilt University School of Medicine, Nashville, TN
    Proteomics 14:2676-87. 2014
  6. pmc Integrative omics analysis reveals the importance and scope of translational repression in microRNA-mediated regulation
    Qi Liu
    Department of Biomedical Informatics, Vanderbilt University School of Medicine, Nashville, Tennessee 37232, USA
    Mol Cell Proteomics 12:1900-11. 2013

Collaborators

  • Lisa J Zimmerman
  • Yu Shyr
  • Henry Rodriguez
  • Yan Guo
  • Bing Zhang
  • Xiaojing Wang
  • Derek Shyr
  • Sean Wang
  • Sherri R Davies
  • Robert C Rivers
  • Robbert J C Slebos
  • Steven A Carr
  • David L Tabb
  • Jing Wang
  • Christopher R Kinsinger
  • Daniel C Liebler
  • R Reid Townsend
  • Kent F Shaddox
  • Robert J Coffey
  • Matthew C Chambers
  • Pei Wang
  • Matthew J C Ellis
  • Sangtae Kim
  • Jing Zhu
  • Zhiao Shi

Detail Information

Publications6

  1. pmc RNA-seq data analysis at the gene and CDS levels provides a comprehensive view of transcriptome responses induced by 4-hydroxynonenal
    Qi Liu
    Department of Biomedical Informatics, Vanderbilt University School of Medicine, Nashville, TN 37232, USA
    Mol Biosyst 9:3036-46. 2013
    ....
  2. pmc Steps to ensure accuracy in genotype and SNP calling from Illumina sequencing data
    Qi Liu
    Center for Quantitative Sciences, Vanderbilt University School of Medicine, Nashville, TN 37232, USA
    BMC Genomics 13:S8. 2012
    ..In this study, we made a systematic assessment of the relative contribution of each step to the accuracy of variant calling from Illumina DNA sequencing data...
  3. pmc Next generation sequencing in cancer research and clinical application
    Derek Shyr
    Center for Quantitative Sciences, Vanderbilt University School of Medicine, 37232, Nashville, TN, USA
    Biol Proced Online 15:4. 2013
    ....
  4. ncbi request reprint Proteogenomic characterization of human colon and rectal cancer
    Bing Zhang
    1 Department of Biomedical Informatics, Vanderbilt University School of Medicine, Nashville, Tennessee 37232, USA 2 Department of Cancer Biology, Vanderbilt University School of Medicine, Nashville, Tennessee 37232, USA
    Nature 513:382-7. 2014
    ..Integrated proteogenomic analysis provides functional context to interpret genomic abnormalities and affords a new paradigm for understanding cancer biology. ..
  5. ncbi request reprint Leveraging the complementary nature of RNA-Seq and shotgun proteomics data
    Xiaojing Wang
    Department of Biomedical Informatics, Vanderbilt University School of Medicine, Nashville, TN
    Proteomics 14:2676-87. 2014
    ..We also examine the current status and future potential of parallel transcriptome and proteome quantification in revealing posttranscriptional regulatory mechanisms. ..
  6. pmc Integrative omics analysis reveals the importance and scope of translational repression in microRNA-mediated regulation
    Qi Liu
    Department of Biomedical Informatics, Vanderbilt University School of Medicine, Nashville, Tennessee 37232, USA
    Mol Cell Proteomics 12:1900-11. 2013
    ..In addition, our study also provided interesting insights into colon cancer biology such as the possible contributions of miR-138 and miR-141/miR-200c in inducing specific phenotypes of SW480 and RKO cell lines, respectively. ..