Aleksey V Zimin

Summary

Affiliation: University of Maryland
Country: USA

Publications

  1. pmc A whole-genome assembly of the domestic cow, Bos taurus
    Aleksey V Zimin
    Institute for Physical Science and Technology, University of Maryland, College Park, Maryland 20742, USA
    Genome Biol 10:R42. 2009
  2. pmc Mis-assembled "segmental duplications" in two versions of the Bos taurus genome
    Aleksey V Zimin
    Institute for Physical Science and Technology, University of Maryland, College Park, Maryland, United States of America
    PLoS ONE 7:e42680. 2012
  3. pmc Improving Phrap-based assembly of the rat using "reliable" overlaps
    Michael Roberts
    Institute for Physical Science and Technology, University of Maryland, College Park, Maryland, United States of America
    PLoS ONE 3:e1836. 2008
  4. ncbi request reprint Assembly reconciliation
    Aleksey V Zimin
    IPST, University of Maryland, College Park, Agencourt Bioscience Inc, Beverly, MA
    Bioinformatics 24:42-5. 2008
  5. pmc The MaSuRCA genome assembler
    Aleksey V Zimin
    Institute for Physical Sciences and Technology, University of Maryland, College Park, MD 20742, USA, Center for Computational Biology, McKusick Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA, Department of Mathematics and Department of Physics, University of Maryland, College Park, MD 20742, USA
    Bioinformatics 29:2669-77. 2013

Detail Information

Publications5

  1. pmc A whole-genome assembly of the domestic cow, Bos taurus
    Aleksey V Zimin
    Institute for Physical Science and Technology, University of Maryland, College Park, Maryland 20742, USA
    Genome Biol 10:R42. 2009
    ..The genome of the domestic cow, Bos taurus, was sequenced using a mixture of hierarchical and whole-genome shotgun sequencing methods...
  2. pmc Mis-assembled "segmental duplications" in two versions of the Bos taurus genome
    Aleksey V Zimin
    Institute for Physical Science and Technology, University of Maryland, College Park, Maryland, United States of America
    PLoS ONE 7:e42680. 2012
    ..2 appear to be a result of a mis-assembly and therefore cannot be qualified as segmental duplications. UMD 3.1 has only 0.41 Mbp of sequence in HFDs that are due to a mis-assembly...
  3. pmc Improving Phrap-based assembly of the rat using "reliable" overlaps
    Michael Roberts
    Institute for Physical Science and Technology, University of Maryland, College Park, Maryland, United States of America
    PLoS ONE 3:e1836. 2008
    ..The UMD Overlapper with options for reliable overlaps is available from the authors at http://www.genome.umd.edu. We also provide the changes to the Phrap source code enabling it to use only the reliable overlaps...
  4. ncbi request reprint Assembly reconciliation
    Aleksey V Zimin
    IPST, University of Maryland, College Park, Agencourt Bioscience Inc, Beverly, MA
    Bioinformatics 24:42-5. 2008
    ..The collaborators then pick the draft assembly that they judge to be the best and the information contained in the other assemblies is usually not used...
  5. pmc The MaSuRCA genome assembler
    Aleksey V Zimin
    Institute for Physical Sciences and Technology, University of Maryland, College Park, MD 20742, USA, Center for Computational Biology, McKusick Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA, Department of Mathematics and Department of Physics, University of Maryland, College Park, MD 20742, USA
    Bioinformatics 29:2669-77. 2013
    ..We call our system the Maryland Super-Read Celera Assembler (abbreviated MaSuRCA and pronounced 'mazurka')...