Dongxiao Zhu

Summary

Affiliation: University of Michigan
Country: USA

Publications

  1. pmc Structural comparison of metabolic networks in selected single cell organisms
    Dongxiao Zhu
    Bioinformatics Program, University of Michigan, Ann Arbor, MI 48109, USA
    BMC Bioinformatics 6:8. 2005
  2. ncbi request reprint Network constrained clustering for gene microarray data
    Dongxiao Zhu
    Bioinformatics Program, University of Michigan, Ann Arbor, MI 48109, USA
    Bioinformatics 21:4014-20. 2005
  3. ncbi request reprint High throughput screening of co-expressed gene pairs with controlled false discovery rate (FDR) and minimum acceptable strength (MAS)
    Dongxiao Zhu
    Bioinformatics Program, University of Michigan, Ann Arbor, MI 48109, USA
    J Comput Biol 12:1029-45. 2005
  4. pmc Targeting of GFP to newborn rods by Nrl promoter and temporal expression profiling of flow-sorted photoreceptors
    Masayuki Akimoto
    Department of Ophthalmology and Visual Sciences, University of Michigan, Ann Arbor, MI 48105, USA
    Proc Natl Acad Sci U S A 103:3890-5. 2006
  5. ncbi request reprint Multivariate correlation estimator for inferring functional relationships from replicated genome-wide data
    Dongxiao Zhu
    Stowers Institute for Medical Research, 1000 E 50th Street, Kansas City, MO 64110, USA
    Bioinformatics 23:2298-305. 2007
  6. ncbi request reprint Bayesian hierarchical model for large-scale covariance matrix estimation
    Dongxiao Zhu
    Stowers Institute for Medical Research, 1000 E 50th Street, Kansas City, MO 64112, USA
    J Comput Biol 14:1311-26. 2007
  7. pmc A statistical framework for consolidating "sibling" probe sets for Affymetrix GeneChip data
    Hua Li
    Bioinformatics Center, Stowers Institute for Medical Research, 1000 E 50th St, Kansas City, MO 64110, USA
    BMC Genomics 9:188. 2008

Detail Information

Publications7

  1. pmc Structural comparison of metabolic networks in selected single cell organisms
    Dongxiao Zhu
    Bioinformatics Program, University of Michigan, Ann Arbor, MI 48109, USA
    BMC Bioinformatics 6:8. 2005
    ....
  2. ncbi request reprint Network constrained clustering for gene microarray data
    Dongxiao Zhu
    Bioinformatics Program, University of Michigan, Ann Arbor, MI 48109, USA
    Bioinformatics 21:4014-20. 2005
    ..Our approach greatly outperforms the traditional approach in rediscovering the relatively well known galactose metabolism pathway in yeast and in clustering genes of the photoreceptor differentiation pathway...
  3. ncbi request reprint High throughput screening of co-expressed gene pairs with controlled false discovery rate (FDR) and minimum acceptable strength (MAS)
    Dongxiao Zhu
    Bioinformatics Program, University of Michigan, Ann Arbor, MI 48109, USA
    J Comput Biol 12:1029-45. 2005
    ..The method has been implemented in an R package "GeneNT" that is freely available from the Comprehensive R Archive Network (CRAN): www.cran.r-project.org/...
  4. pmc Targeting of GFP to newborn rods by Nrl promoter and temporal expression profiling of flow-sorted photoreceptors
    Masayuki Akimoto
    Department of Ophthalmology and Visual Sciences, University of Michigan, Ann Arbor, MI 48105, USA
    Proc Natl Acad Sci U S A 103:3890-5. 2006
    ..Our results provide a framework for establishing gene regulatory networks that lead to mature functional photoreceptors from postmitotic precursors. Differentially expressed rod and cone genes are excellent candidates for retinopathies...
  5. ncbi request reprint Multivariate correlation estimator for inferring functional relationships from replicated genome-wide data
    Dongxiao Zhu
    Stowers Institute for Medical Research, 1000 E 50th Street, Kansas City, MO 64110, USA
    Bioinformatics 23:2298-305. 2007
    ..We demonstrate advantages of the new multivariate correlation estimator over Pearson bivariate correlation estimator using simulations and real-world data analysis examples...
  6. ncbi request reprint Bayesian hierarchical model for large-scale covariance matrix estimation
    Dongxiao Zhu
    Stowers Institute for Medical Research, 1000 E 50th Street, Kansas City, MO 64112, USA
    J Comput Biol 14:1311-26. 2007
    ..We demonstrate the advantages of our approaches over the traditional approaches using simulations and OMICS data analysis...
  7. pmc A statistical framework for consolidating "sibling" probe sets for Affymetrix GeneChip data
    Hua Li
    Bioinformatics Center, Stowers Institute for Medical Research, 1000 E 50th St, Kansas City, MO 64110, USA
    BMC Genomics 9:188. 2008
    ..The most appropriate way of consolidating sibling probe sets suitable for analysis is an open problem. We propose the Analysis of Variance (ANOVA) framework to decide which sibling probe sets can be consolidated...