Stanislav O Zakharkin

Summary

Affiliation: University of Alabama at Birmingham
Country: USA

Publications

  1. pmc Sources of variation in Affymetrix microarray experiments
    Stanislav O Zakharkin
    University of Alabama, Birmingham, Alabama, USA
    BMC Bioinformatics 6:214. 2005
  2. ncbi request reprint Optimal allocation of replicates for measurement evaluation studies
    Stanislav O Zakharkin
    Department of Biostatistics, University of Alabama at Birmingham, Birmingham, AL 35294 0022, USA
    Genomics Proteomics Bioinformatics 4:196-202. 2006
  3. pmc HDBStat!: a platform-independent software suite for statistical analysis of high dimensional biology data
    Prinal Trivedi
    Department of Biostatistics, University of Alabama at Birmingham, Birmingham, AL 35294, USA
    BMC Bioinformatics 6:86. 2005
  4. ncbi request reprint Epistemological issues in omics and high-dimensional biology: give the people what they want
    Tapan S Mehta
    Department of Biostatistics, Section on Statistical Genetics, University of Alabama at Birmingham, Birmingham, Alabama 35294, USA
    Physiol Genomics 28:24-32. 2006
  5. ncbi request reprint Catechol-O-methyl-transferase functional polymorphism and nicotine dependence: an evaluation of nonreplicated results
    David T Redden
    Department of Biostatistics, Section on Statistical Genetics, University of Alabama at Birmingham, Alabama 35294 0022, USA
    Cancer Epidemiol Biomarkers Prev 14:1384-9. 2005
  6. ncbi request reprint Applications of Bayesian statistical methods in microarray data analysis
    Dongyan Yang
    Section on Statistical Genetics, University of Alabama at Birmingham, Birmingham, AL 35294, USA
    Am J Pharmacogenomics 4:53-62. 2004
  7. ncbi request reprint Identification of two mariner-like elements in the genome of the mosquito Ochlerotatus atropalpus
    Stanislav O Zakharkin
    Section on Statistical Genetics, Department of Biostatistics, University of Alabama at Birmingham, Birmingham, AL 35294, USA
    Insect Biochem Mol Biol 34:377-86. 2004
  8. ncbi request reprint Microarray analysis
    Grier P Page
    Department of Biostatistics, University of Alabama at Birmingham, Hoover, AL, USA
    Methods Mol Biol 404:409-30. 2007

Detail Information

Publications8

  1. pmc Sources of variation in Affymetrix microarray experiments
    Stanislav O Zakharkin
    University of Alabama, Birmingham, Alabama, USA
    BMC Bioinformatics 6:214. 2005
    ..The objectives of this study were: (1) to estimate relative magnitudes of different sources of variation and (2) to evaluate agreement between biological and technical replicates...
  2. ncbi request reprint Optimal allocation of replicates for measurement evaluation studies
    Stanislav O Zakharkin
    Department of Biostatistics, University of Alabama at Birmingham, Birmingham, AL 35294 0022, USA
    Genomics Proteomics Bioinformatics 4:196-202. 2006
    ..Therefore, it is recommended to use two technical replicates for each biological replicate if the goal is to evaluate the reproducibility of measurements...
  3. pmc HDBStat!: a platform-independent software suite for statistical analysis of high dimensional biology data
    Prinal Trivedi
    Department of Biostatistics, University of Alabama at Birmingham, Birmingham, AL 35294, USA
    BMC Bioinformatics 6:86. 2005
    ..HDBStat! provides statisticians and biologists a flexible and easy-to-use interface to analyze complex microarray data using a variety of methods for data preprocessing, quality control analysis and hypothesis testing...
  4. ncbi request reprint Epistemological issues in omics and high-dimensional biology: give the people what they want
    Tapan S Mehta
    Department of Biostatistics, Section on Statistical Genetics, University of Alabama at Birmingham, Birmingham, Alabama 35294, USA
    Physiol Genomics 28:24-32. 2006
    ..The shift from family-wise error rate control to false discovery rate estimation and to assessment of ranking and other forms of stability will be portrayed as illustrative of approaches to this challenge...
  5. ncbi request reprint Catechol-O-methyl-transferase functional polymorphism and nicotine dependence: an evaluation of nonreplicated results
    David T Redden
    Department of Biostatistics, Section on Statistical Genetics, University of Alabama at Birmingham, Alabama 35294 0022, USA
    Cancer Epidemiol Biomarkers Prev 14:1384-9. 2005
    ....
  6. ncbi request reprint Applications of Bayesian statistical methods in microarray data analysis
    Dongyan Yang
    Section on Statistical Genetics, University of Alabama at Birmingham, Birmingham, AL 35294, USA
    Am J Pharmacogenomics 4:53-62. 2004
    ..Bayesian methods will undoubtedly become more common in the future because of their great utility in microarray analysis...
  7. ncbi request reprint Identification of two mariner-like elements in the genome of the mosquito Ochlerotatus atropalpus
    Stanislav O Zakharkin
    Section on Statistical Genetics, Department of Biostatistics, University of Alabama at Birmingham, Birmingham, AL 35294, USA
    Insect Biochem Mol Biol 34:377-86. 2004
    ..Phylogenetic analysis demonstrated that Atmar-1 elements belong to the irritans subfamily and Atmar-2 elements to the cecropia subfamily of mariner elements...
  8. ncbi request reprint Microarray analysis
    Grier P Page
    Department of Biostatistics, University of Alabama at Birmingham, Hoover, AL, USA
    Methods Mol Biol 404:409-30. 2007
    ..These steps include a clearly stated biological question, experimental design, careful experimental conduct, complete statistical analysis, validation/verification of results, and dissemination of the data...