Joshua S Yuan

Summary

Affiliation: University of Tennessee
Country: USA

Publications

  1. pmc Statistical analysis of real-time PCR data
    Joshua S Yuan
    Department of Plant Sciences, University of Tennessee, Knoxville, TN 37996, USA
    BMC Bioinformatics 7:85. 2006
  2. pmc Statistical tools for transgene copy number estimation based on real-time PCR
    Joshua S Yuan
    Department of Plant Sciences, University of Tennessee, Knoxville, TN 37996, USA
    BMC Bioinformatics 8:S6. 2007
  3. doi request reprint Differential expression of genes in soybean in response to the causal agent of Asian soybean rust (Phakopsora pachyrhizi Sydow) is soybean growth stage-specific
    Dilip R Panthee
    Department of Plant Sciences, 252 Ellington Plant Sciences, The University of Tennessee, 2431 Joe Johnson Dr, Knoxville, TN, 37996, USA
    Theor Appl Genet 118:359-70. 2009
  4. doi request reprint Molecular and genomic basis of volatile-mediated indirect defense against insects in rice
    Joshua S Yuan
    Department of Plant Sciences, University of Tennessee, Knoxville, TN 37996, USA
    Plant J 55:491-503. 2008
  5. ncbi request reprint Statistical methods for efficiency adjusted real-time PCR quantification
    Joshua S Yuan
    UTIA Genomics Hub, The University of Tennessee, Knoxville, TN 37996, USA
    Biotechnol J 3:112-23. 2008
  6. doi request reprint Advanced genetic tools for plant biotechnology
    Wusheng Liu
    Department of Plant Sciences, University of Tennessee, Knoxville, Tennessee 37996, USA
    Nat Rev Genet 14:781-93. 2013
  7. pmc Transcriptional responses of Arabidopsis thaliana plants to As (V) stress
    Jason M Abercrombie
    Department of Plant Sciences, University of Tennessee, 2431 Joe Johnson Blvd, Knoxville, TN 37996 4561, USA
    BMC Plant Biol 8:87. 2008
  8. doi request reprint Characterization of the horseweed (Conyza canadensis) transcriptome using GS-FLX 454 pyrosequencing and its application for expression analysis of candidate non-target herbicide resistance genes
    Yanhui Peng
    Department of Plant Sciences, University of Tennessee, Knoxville, TN USA
    Pest Manag Sci 66:1053-62. 2010
  9. ncbi request reprint A type IV P-type ATPase affects insulin-mediated glucose uptake in adipose tissue and skeletal muscle in mice
    Madhu S Dhar
    Large Animal Clinical Sciences, College of Veterinary Medicine, University of Tennessee, Knoxville, TN 37996 4500, USA
    J Nutr Biochem 17:811-20. 2006
  10. pmc Sensitivity of a real-time PCR method for the detection of transgenes in a mixture of transgenic and non-transgenic seeds of papaya (Carica papaya L.)
    Madhugiri Nageswara-Rao
    Department of Plant Sciences, The University of Tennessee, 252 Ellington Plant Sciences, 2431 Joe Johnson Dr, Knoxville, TN 37996, USA
    BMC Biotechnol 13:69. 2013

Detail Information

Publications15

  1. pmc Statistical analysis of real-time PCR data
    Joshua S Yuan
    Department of Plant Sciences, University of Tennessee, Knoxville, TN 37996, USA
    BMC Bioinformatics 7:85. 2006
    ..Based on the standard curve method and other useful data analysis methods, we present and compare four statistical approaches and models for the analysis of real-time PCR data...
  2. pmc Statistical tools for transgene copy number estimation based on real-time PCR
    Joshua S Yuan
    Department of Plant Sciences, University of Tennessee, Knoxville, TN 37996, USA
    BMC Bioinformatics 8:S6. 2007
    ..Despite the recent progresses in statistical analysis of real-time PCR, few publications have integrated these advancements in real-time PCR based transgene copy number determination...
  3. doi request reprint Differential expression of genes in soybean in response to the causal agent of Asian soybean rust (Phakopsora pachyrhizi Sydow) is soybean growth stage-specific
    Dilip R Panthee
    Department of Plant Sciences, 252 Ellington Plant Sciences, The University of Tennessee, 2431 Joe Johnson Dr, Knoxville, TN, 37996, USA
    Theor Appl Genet 118:359-70. 2009
    ..We performed real-time RT-PCR analysis on nine of these genes from both growth stages and both plant species and found results to be congruent with those from the microarray analysis...
  4. doi request reprint Molecular and genomic basis of volatile-mediated indirect defense against insects in rice
    Joshua S Yuan
    Department of Plant Sciences, University of Tennessee, Knoxville, TN 37996, USA
    Plant J 55:491-503. 2008
    ..Evolution of the genetic basis governing volatile terpenoid biosynthesis for indirect defense is discussed...
  5. ncbi request reprint Statistical methods for efficiency adjusted real-time PCR quantification
    Joshua S Yuan
    UTIA Genomics Hub, The University of Tennessee, Knoxville, TN 37996, USA
    Biotechnol J 3:112-23. 2008
    ..Our results underline the differences between the efficiency adjusted Delta Delta Ct methods and previously published methods, thereby better identifying and controlling the source of errors introduced by real-time PCR data analysis...
  6. doi request reprint Advanced genetic tools for plant biotechnology
    Wusheng Liu
    Department of Plant Sciences, University of Tennessee, Knoxville, Tennessee 37996, USA
    Nat Rev Genet 14:781-93. 2013
    ..These genetic technologies should be integrated to realize their potential for applications to pressing agricultural and environmental problems. ..
  7. pmc Transcriptional responses of Arabidopsis thaliana plants to As (V) stress
    Jason M Abercrombie
    Department of Plant Sciences, University of Tennessee, 2431 Joe Johnson Blvd, Knoxville, TN 37996 4561, USA
    BMC Plant Biol 8:87. 2008
    ..There is a strong chemical similarity between arsenate [As (V)] and phosphate (Pi). Whole genome oligonucleotide microarrays were employed to investigate the transcriptional responses of Arabidopsis thaliana plants to As (V) stress...
  8. doi request reprint Characterization of the horseweed (Conyza canadensis) transcriptome using GS-FLX 454 pyrosequencing and its application for expression analysis of candidate non-target herbicide resistance genes
    Yanhui Peng
    Department of Plant Sciences, University of Tennessee, Knoxville, TN USA
    Pest Manag Sci 66:1053-62. 2010
    ..However, available sequence data for this species are scant. The transcriptomic sequence should be useful for gene discovery, and to help elucidate the non-target-based glyphosate resistance mechanism and the genomic basis of weediness...
  9. ncbi request reprint A type IV P-type ATPase affects insulin-mediated glucose uptake in adipose tissue and skeletal muscle in mice
    Madhu S Dhar
    Large Animal Clinical Sciences, College of Veterinary Medicine, University of Tennessee, Knoxville, TN 37996 4500, USA
    J Nutr Biochem 17:811-20. 2006
    ..In conclusion, experiments suggest that the target genes and/or their cognate factors in conjunction with Atp10c presumably affect the normal translocation and sequestration of GLUT4 in both the target tissues...
  10. pmc Sensitivity of a real-time PCR method for the detection of transgenes in a mixture of transgenic and non-transgenic seeds of papaya (Carica papaya L.)
    Madhugiri Nageswara-Rao
    Department of Plant Sciences, The University of Tennessee, 252 Ellington Plant Sciences, 2431 Joe Johnson Dr, Knoxville, TN 37996, USA
    BMC Biotechnol 13:69. 2013
    ..Development of high-throughput methods to reliably detect the adventitious presence of such transgenic material would benefit both the scientific and regulatory communities...
  11. doi request reprint Plants to power: bioenergy to fuel the future
    Joshua S Yuan
    Department of Plant Sciences, University of Tennessee, Knoxville, TN 37996, USA
    Trends Plant Sci 13:421-9. 2008
    ....
  12. pmc Gene alterations by peroxisome proliferator-activated receptor gamma agonists in human colorectal cancer cells
    Maria Cekanova
    Laboratory of Environmental Carcinogenesis, Department of Pathobiology, College of Veterinary Medicine, The University of Tennessee, Knoxville, TN 37996, USA
    Int J Oncol 32:809-19. 2008
    ....
  13. doi request reprint Plant systems biology comes of age
    Joshua S Yuan
    UTIA Genomics Hub, University of Tennessee, Knoxville, TN 37996, USA
    Trends Plant Sci 13:165-71. 2008
    ..Applications of systems biology to plant science have been rapid, and have increased our knowledge about circadian rhythms, multigenic traits, stress responses and plant defenses, and have advanced the virtual plant project...
  14. ncbi request reprint The endo-beta-mannanase gene families in Arabidopsis, rice, and poplar
    Joshua S Yuan
    Department of Plant Sciences, University of Tennessee, 2431 Joe Johnson Drive, Knoxville, TN 37996, USA
    Funct Integr Genomics 7:1-16. 2007
    ....
  15. pmc An Arabidopsis thaliana methyltransferase capable of methylating farnesoic acid
    Yue Yang
    Department of Molecular, Cellular and Developmental Biology, University of Michigan, 830 North University Street, Ann Arbor, MI 48109 1048, USA
    Arch Biochem Biophys 448:123-32. 2006
    ....