Research Topics
| Nevin D YoungSummaryAffiliation: University of Minnesota Country: USA Publications
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Detail Information
Publications
Genome-enabled insights into legume biologyNevin D Young
Department of Plant Pathology and Department of Plant Biology, University of Minnesota, St Paul, MN 55108, USA
Annu Rev Plant Biol 63:283-305. 2012..Translating genomic resources from sequenced species to less studied but still important "orphan" legumes will enhance prospects for world food production...- Translating Medicago truncatula genomics to crop legumesNevin Dale Young
Department of Plant Pathology, 495 Borlaug Hall, University of Minnesota, St Paul, MN 55108, USA
Curr Opin Plant Biol 12:193-201. 2009..truncatula and related crop species, while tagged mutant populations simplify the process of determining gene function... 
Sequencing the genespaces of Medicago truncatula and Lotus japonicusNevin D Young
Department of Plant Pathology, University of Minnesota, St. Paul, Minnesota 55108, USA
Plant Physiol 137:1174-81. 2005- The Medicago genome provides insight into the evolution of rhizobial symbiosesNevin D Young
Department of Plant Pathology, University of Minnesota, St Paul, Minnesota 55108, USA
Nature 480:520-4. 2011..As such, the M. truncatula genome sequence provides significant opportunities to expand alfalfa's genomic toolbox... 
Legume genomes: more than peas in a podNevin Dale Young
Department of Plant Pathology, 495 Borlaug Hall, University of Minnesota, St Paul, Minnesota 55108, USA
Curr Opin Plant Biol 6:199-204. 2003..To understand legume genomes better, it will be necessary to develop tools for studying under-represented taxa beyond the relatively small group of economically important species that have been examined so far...- Transcriptional analysis of highly syntenic regions between Medicago truncatula and Glycine max using tiling microarraysLei Li
Department of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, CT 06520, USA
Genome Biol 9:R57. 2008..The unprecedented complexity and impending completeness of these data create opportunities for new approaches to discovery... 
Highly syntenic regions in the genomes of soybean, Medicago truncatula, and Arabidopsis thalianaJoann Mudge
Dept of Plant Pathology, University of Minnesota, St Paul, MN 55108, USA
BMC Plant Biol 5:15. 2005..Characterizing syntenic relationships in legumes is important in transferring knowledge from model legumes to crops that are important sources of protein, fixed nitrogen, and health-promoting compounds...- Legume genome evolution viewed through the Medicago truncatula and Lotus japonicus genomesSteven B Cannon
Department of Plant Pathology, University of Minnesota, St. Paul, MN 55108, USA
Proc Natl Acad Sci U S A 103:14959-64. 2006..Phylogenetic comparisons place this duplication within the Rosid I clade, clearly after the split between legumes and Salicaceae (poplar)... - The roles of segmental and tandem gene duplication in the evolution of large gene families in Arabidopsis thalianaSteven B Cannon
Plant Biology Department, University of Minnesota, St, Paul, MN 55108, USA
BMC Plant Biol 4:10. 2004.... - Phylogeny and genomic organization of the TIR and non-tIR NBS-LRR resistance gene family in Medicago truncatulaHongyan Zhu
Department of Plant Pathology, University of California, Davis 95616, USA
Mol Plant Microbe Interact 15:529-39. 2002..Comparative mapping reveals several blocks of resistance gene loci that are syntenic between M. truncatula and soybean and between M. truncatula and pea... - Databases and information integration for the Medicago truncatula genome and transcriptomeSteven B Cannon
Department of Plant Pathology, University of Minnesota, St. Paul, Minnesota 55108, USA
Plant Physiol 138:38-46. 2005..ucdavis.edu, and genome viewers at the University of Oklahoma (www.genome.ou.edu), the Institute for Genomic Research (www.tigr.org), and Munich Information for Protein Sequences Center (mips.gsf.de)... - Population genomics of the facultatively mutualistic bacteria Sinorhizobium meliloti and S. medicaeBrendan Epstein
Department of Plant Biology, University of Minnesota, St Paul, Minnesota, United States of America
PLoS Genet 8:e1002868. 2012..Based upon available functional information, several genes identified as targets of selection are likely to alter the symbiosis with the host plant, making them attractive targets for further functional characterization... - Distribution of microsatellites in the genome of Medicago truncatula: a resource of genetic markers that integrate genetic and physical mapsJeong-Hwan Mun
Department of Plant Pathology, University of California, Davis 95616, USA
Genetics 172:2541-55. 2006..A total of 378 genetic markers could be integrated with sequenced BAC clones, anchoring 274 physical contigs that represent 174 Mbp of the genome and composing an estimated 70% of the euchromatic gene space... - OrthoParaMap: distinguishing orthologs from paralogs by integrating comparative genome data and gene phylogeniesSteven B Cannon
Plant Biology Department, University of Minnesota, St, Paul, MN 55108, USA
BMC Bioinformatics 4:35. 2003.... - Comparative genomic analysis of sequences sampled from a small region on soybean (Glycine max) molecular linkage group GDawn Foster-Hartnett
Department of Plant Pathology, St. Paul, MN 55108, USA
Genome 45:634-45. 2002.... - Soybean bacterial artificial chromosome contigs anchored with RFLPs: insights into genome duplication and gene clusteringJoann Mudge
Department of Plant Pathology, University of Minnesota, St Paul 55108, USA
Genome 47:361-72. 2004..Homoeologous BAC contigs often exhibited extensive microsynteny. Furthermore, paralogs recovered from duplicate contigs shared 86%-100% sequence identity... - Cross-species EST alignments reveal novel and conserved alternative splicing events in legumesBing Bing Wang
Department of Plant Pathology, University of Minnesota, St, Paul, MN 55108, USA
BMC Plant Biol 8:17. 2008..Here we report the characteristics of AS in legumes, one of the largest and most important plant families, based on EST alignments to the genome sequences of Medicago truncatula (Mt) and Lotus japonicus (Lj)... - DiagHunter and GenoPix2D: programs for genomic comparisons, large-scale homology discovery and visualizationSteven B Cannon
Plant Biology Department, University of Minnesota, St Paul, MN 55108, USA
Genome Biol 4:R68. 2003..GenoPix2D allows interactive display of synteny blocks and other genomic features, as well as querying by annotation and by sequence similarity... - Whole-genome nucleotide diversity, recombination, and linkage disequilibrium in the model legume Medicago truncatulaAntoine Branca
Department of Plant Biology, University of Minnesota, Saint Paul, MN 55108, USA
Proc Natl Acad Sci U S A 108:E864-70. 2011.... - Diversity, distribution, and ancient taxonomic relationships within the TIR and non-TIR NBS-LRR resistance gene subfamiliesSteven B Cannon
Department of Plant Biology, University of Minnesota, St Paul, MN 55108, USA
J Mol Evol 54:548-62. 2002.... - MtDB: a database for personalized data mining of the model legume Medicago truncatula transcriptomeAnne Francoise J Lamblin
Center for Computational Genomics and Bioinformatics, University of Minnesota, MMC43, 420 Delaware Street S E, Minneapolis, MN 55455, USA
Nucleic Acids Res 31:196-201. 2003..The underlying database and query software have been designed for ease of updates and portability to other model organisms. Public access to the database is at http://www.medicago.org/MtDB... - Molecular and cytological responses of Medicago truncatula to Erysiphe pisiDawn Foster-Hartnett
Department of Plant Pathology, University of Minnesota, 495 Borlaug Hall, St Paul, MN 55108, USA
Mol Plant Pathol 8:307-19. 2007....