Nevin D Young

Summary

Affiliation: University of Minnesota
Country: USA

Publications

  1. doi request reprint Detecting small plant peptides using SPADA (Small Peptide Alignment Discovery Application)
    Peng Zhou
    Department of Plant Pathology, University of Minnesota, St, Paul, Minnesota 55108, USA
    BMC Bioinformatics 14:335. 2013
  2. doi request reprint Genome-enabled insights into legume biology
    Nevin D Young
    Department of Plant Pathology and Department of Plant Biology, University of Minnesota, St Paul, MN 55108, USA
    Annu Rev Plant Biol 63:283-305. 2012
  3. pmc The Medicago genome provides insight into the evolution of rhizobial symbioses
    Nevin D Young
    Department of Plant Pathology, University of Minnesota, St Paul, Minnesota 55108, USA
    Nature 480:520-4. 2011
  4. pmc Sequencing the genespaces of Medicago truncatula and Lotus japonicus
    Nevin D Young
    Department of Plant Pathology, University of Minnesota, St Paul, Minnesota 55108, USA
    Plant Physiol 137:1174-81. 2005
  5. doi request reprint Translating Medicago truncatula genomics to crop legumes
    Nevin Dale Young
    Department of Plant Pathology, 495 Borlaug Hall, University of Minnesota, St Paul, MN 55108, USA
    Curr Opin Plant Biol 12:193-201. 2009
  6. ncbi request reprint Legume genomes: more than peas in a pod
    Nevin Dale Young
    Department of Plant Pathology, 495 Borlaug Hall, University of Minnesota, St Paul, Minnesota 55108, USA
    Curr Opin Plant Biol 6:199-204. 2003
  7. pmc Transcriptional analysis of highly syntenic regions between Medicago truncatula and Glycine max using tiling microarrays
    Lei Li
    Department of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, CT 06520, USA
    Genome Biol 9:R57. 2008
  8. pmc Highly syntenic regions in the genomes of soybean, Medicago truncatula, and Arabidopsis thaliana
    Joann Mudge
    Dept of Plant Pathology, University of Minnesota, St Paul, MN 55108, USA
    BMC Plant Biol 5:15. 2005
  9. pmc Legume genome evolution viewed through the Medicago truncatula and Lotus japonicus genomes
    Steven B Cannon
    Department of Plant Pathology, University of Minnesota, St Paul, MN 55108, USA
    Proc Natl Acad Sci U S A 103:14959-64. 2006
  10. pmc The roles of segmental and tandem gene duplication in the evolution of large gene families in Arabidopsis thaliana
    Steven B Cannon
    Plant Biology Department, University of Minnesota, St, Paul, MN 55108, USA
    BMC Plant Biol 4:10. 2004

Collaborators

Detail Information

Publications25

  1. doi request reprint Detecting small plant peptides using SPADA (Small Peptide Alignment Discovery Application)
    Peng Zhou
    Department of Plant Pathology, University of Minnesota, St, Paul, Minnesota 55108, USA
    BMC Bioinformatics 14:335. 2013
    ..Consequently, there is an urgent need for both experimental and computational studies in order to further advance the accurate prediction of small peptides...
  2. doi request reprint Genome-enabled insights into legume biology
    Nevin D Young
    Department of Plant Pathology and Department of Plant Biology, University of Minnesota, St Paul, MN 55108, USA
    Annu Rev Plant Biol 63:283-305. 2012
    ..Translating genomic resources from sequenced species to less studied but still important "orphan" legumes will enhance prospects for world food production...
  3. pmc The Medicago genome provides insight into the evolution of rhizobial symbioses
    Nevin D Young
    Department of Plant Pathology, University of Minnesota, St Paul, Minnesota 55108, USA
    Nature 480:520-4. 2011
    ..As such, the M. truncatula genome sequence provides significant opportunities to expand alfalfa's genomic toolbox...
  4. pmc Sequencing the genespaces of Medicago truncatula and Lotus japonicus
    Nevin D Young
    Department of Plant Pathology, University of Minnesota, St Paul, Minnesota 55108, USA
    Plant Physiol 137:1174-81. 2005
  5. doi request reprint Translating Medicago truncatula genomics to crop legumes
    Nevin Dale Young
    Department of Plant Pathology, 495 Borlaug Hall, University of Minnesota, St Paul, MN 55108, USA
    Curr Opin Plant Biol 12:193-201. 2009
    ..truncatula and related crop species, while tagged mutant populations simplify the process of determining gene function...
  6. ncbi request reprint Legume genomes: more than peas in a pod
    Nevin Dale Young
    Department of Plant Pathology, 495 Borlaug Hall, University of Minnesota, St Paul, Minnesota 55108, USA
    Curr Opin Plant Biol 6:199-204. 2003
    ..To understand legume genomes better, it will be necessary to develop tools for studying under-represented taxa beyond the relatively small group of economically important species that have been examined so far...
  7. pmc Transcriptional analysis of highly syntenic regions between Medicago truncatula and Glycine max using tiling microarrays
    Lei Li
    Department of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, CT 06520, USA
    Genome Biol 9:R57. 2008
    ..The unprecedented complexity and impending completeness of these data create opportunities for new approaches to discovery...
  8. pmc Highly syntenic regions in the genomes of soybean, Medicago truncatula, and Arabidopsis thaliana
    Joann Mudge
    Dept of Plant Pathology, University of Minnesota, St Paul, MN 55108, USA
    BMC Plant Biol 5:15. 2005
    ..Characterizing syntenic relationships in legumes is important in transferring knowledge from model legumes to crops that are important sources of protein, fixed nitrogen, and health-promoting compounds...
  9. pmc Legume genome evolution viewed through the Medicago truncatula and Lotus japonicus genomes
    Steven B Cannon
    Department of Plant Pathology, University of Minnesota, St Paul, MN 55108, USA
    Proc Natl Acad Sci U S A 103:14959-64. 2006
    ..Phylogenetic comparisons place this duplication within the Rosid I clade, clearly after the split between legumes and Salicaceae (poplar)...
  10. pmc The roles of segmental and tandem gene duplication in the evolution of large gene families in Arabidopsis thaliana
    Steven B Cannon
    Plant Biology Department, University of Minnesota, St, Paul, MN 55108, USA
    BMC Plant Biol 4:10. 2004
    ....
  11. ncbi request reprint Phylogeny and genomic organization of the TIR and non-tIR NBS-LRR resistance gene family in Medicago truncatula
    Hongyan Zhu
    Department of Plant Pathology, University of California, Davis 95616, USA
    Mol Plant Microbe Interact 15:529-39. 2002
    ..Comparative mapping reveals several blocks of resistance gene loci that are syntenic between M. truncatula and soybean and between M. truncatula and pea...
  12. pmc Population genomics of the facultatively mutualistic bacteria Sinorhizobium meliloti and S. medicae
    Brendan Epstein
    Department of Plant Biology, University of Minnesota, St Paul, Minnesota, United States of America
    PLoS Genet 8:e1002868. 2012
    ..Based upon available functional information, several genes identified as targets of selection are likely to alter the symbiosis with the host plant, making them attractive targets for further functional characterization...
  13. pmc Distribution of microsatellites in the genome of Medicago truncatula: a resource of genetic markers that integrate genetic and physical maps
    Jeong Hwan Mun
    Department of Plant Pathology, University of California, Davis 95616, USA
    Genetics 172:2541-55. 2006
    ..A total of 378 genetic markers could be integrated with sequenced BAC clones, anchoring 274 physical contigs that represent 174 Mbp of the genome and composing an estimated 70% of the euchromatic gene space...
  14. ncbi request reprint Comparative genomic analysis of sequences sampled from a small region on soybean (Glycine max) molecular linkage group G
    Dawn Foster-Hartnett
    Department of Plant Pathology, St Paul, MN 55108, USA
    Genome 45:634-45. 2002
    ....
  15. doi request reprint Phylogenetic signal variation in the genomes of Medicago (Fabaceae)
    Jeremy B Yoder
    Department of Plant Biology, University of Minnesota, Saint Paul MN 55108, USA
    Syst Biol 62:424-38. 2013
    ....
  16. pmc Cross-species EST alignments reveal novel and conserved alternative splicing events in legumes
    Bing Bing Wang
    Department of Plant Pathology, University of Minnesota, St, Paul, MN 55108, USA
    BMC Plant Biol 8:17. 2008
    ..Here we report the characteristics of AS in legumes, one of the largest and most important plant families, based on EST alignments to the genome sequences of Medicago truncatula (Mt) and Lotus japonicus (Lj)...
  17. pmc OrthoParaMap: distinguishing orthologs from paralogs by integrating comparative genome data and gene phylogenies
    Steven B Cannon
    Plant Biology Department, University of Minnesota, St, Paul, MN 55108, USA
    BMC Bioinformatics 4:35. 2003
    ....
  18. pmc DiagHunter and GenoPix2D: programs for genomic comparisons, large-scale homology discovery and visualization
    Steven B Cannon
    Plant Biology Department, University of Minnesota, St Paul, MN 55108, USA
    Genome Biol 4:R68. 2003
    ..GenoPix2D allows interactive display of synteny blocks and other genomic features, as well as querying by annotation and by sequence similarity...
  19. pmc Databases and information integration for the Medicago truncatula genome and transcriptome
    Steven B Cannon
    Department of Plant Pathology, University of Minnesota, St Paul, Minnesota 55108, USA
    Plant Physiol 138:38-46. 2005
    ..ucdavis.edu, and genome viewers at the University of Oklahoma (www.genome.ou.edu), the Institute for Genomic Research (www.tigr.org), and Munich Information for Protein Sequences Center (mips.gsf.de)...
  20. ncbi request reprint Soybean bacterial artificial chromosome contigs anchored with RFLPs: insights into genome duplication and gene clustering
    Joann Mudge
    Department of Plant Pathology, University of Minnesota, St Paul 55108, USA
    Genome 47:361-72. 2004
    ..Homoeologous BAC contigs often exhibited extensive microsynteny. Furthermore, paralogs recovered from duplicate contigs shared 86%-100% sequence identity...
  21. ncbi request reprint Diversity, distribution, and ancient taxonomic relationships within the TIR and non-TIR NBS-LRR resistance gene subfamilies
    Steven B Cannon
    Department of Plant Biology, University of Minnesota, St Paul, MN 55108, USA
    J Mol Evol 54:548-62. 2002
    ....
  22. ncbi request reprint Molecular and cytological responses of Medicago truncatula to Erysiphe pisi
    Dawn Foster-Hartnett
    Department of Plant Pathology, University of Minnesota, 495 Borlaug Hall, St Paul, MN 55108, USA
    Mol Plant Pathol 8:307-19. 2007
    ....
  23. doi request reprint Genomic Signature of Adaptation to Climate in Medicago truncatula
    Jeremy B Yoder
    Department of Plant Biology, University of Minnesota, Saint Paul, Minnesota 55108
    Genetics 196:1263-75. 2014
    ..These patterns of diversity are consistent with a history of soft selective sweeps acting on loci underlying adaptation to climate, but not with a history of long-term balancing selection. ..
  24. pmc MtDB: a database for personalized data mining of the model legume Medicago truncatula transcriptome
    Anne Francoise J Lamblin
    Center for Computational Genomics and Bioinformatics, University of Minnesota, MMC43, 420 Delaware Street S E, Minneapolis, MN 55455, USA
    Nucleic Acids Res 31:196-201. 2003
    ..The underlying database and query software have been designed for ease of updates and portability to other model organisms. Public access to the database is at http://www.medicago.org/MtDB...
  25. pmc Whole-genome nucleotide diversity, recombination, and linkage disequilibrium in the model legume Medicago truncatula
    Antoine Branca
    Department of Plant Biology, University of Minnesota, Saint Paul, MN 55108, USA
    Proc Natl Acad Sci U S A 108:E864-70. 2011
    ....