Baolin Wu

Summary

Affiliation: University of Minnesota
Country: USA

Publications

  1. ncbi request reprint Cancer outlier differential gene expression detection
    Baolin Wu
    Division of Biostatistics, School of Public Health, University of Minnesota, A460 Mayo Building, MMC 303, Minneapolis, MN 55455, USA
    Biostatistics 8:566-75. 2007
  2. ncbi request reprint Levitronix ventricular assist devices as a bridge to recovery after profound biventricular heart failure associated with pulmonary aspergillosis
    Bryan A Whitson
    Department of Surgery, Division of Cardiovascular and Thoracic Surgery, University of Minnesota, Minneapolis, Minnesota 55455, USA
    J Heart Lung Transplant 26:345-9. 2007
  3. doi request reprint Minimally invasive versus open Roux-en-Y gastric bypass: effect on immune effector cells
    Bryan A Whitson
    Department of Surgery, University of Minnesota Medical School, Minneapolis, Minnesota 55455, USA
    Surg Obes Relat Dis 5:181-93. 2009
  4. ncbi request reprint Evolution of clipping for thoracoscopic sympathectomy in symptomatic hyperhidrosis
    Bryan A Whitson
    Section of Thoracic and Foregut Surgery, University of Minnesota, Department of Surgery and Center for Minimally Invasive Surgery, Minneapolis, MN 55455, USA
    Surg Laparosc Endosc Percutan Tech 17:287-90. 2007
  5. ncbi request reprint Video-assisted thoracoscopic surgery is more favorable than thoracotomy for resection of clinical stage I non-small cell lung cancer
    Bryan A Whitson
    Department of Surgery, Section of Thoracic and Foregut Surgery, University of Minnesota Medical Center, Minneapolis, Minnesota 55455, USA
    Ann Thorac Surg 83:1965-70. 2007
  6. ncbi request reprint Minimally invasive cancer surgery improves patient survival rates through less perioperative immunosuppression
    B A Whitson
    Section of Thoracic and Foregut Surgery, University of Minnesota, Department of Surgery, MMC 207, 420 Delaware St SE, Minneapolis, MN 55455, USA
    Med Hypotheses 68:1328-32. 2007
  7. ncbi request reprint Spontaneous posterior rectus sheath hernia: a new clinical entity?
    B A Whitson
    Department of Surgery, University of Minnesota, MMC 195, 420 Delaware St SE, Minneapolis, MN 55455, USA
    Hernia 11:445-7. 2007
  8. doi request reprint Thoracoscopic versus thoracotomy approaches to lobectomy: differential impairment of cellular immunity
    Bryan A Whitson
    Department of Surgery, University of Minnesota, Minneapolis, Minnesota, USA
    Ann Thorac Surg 86:1735-44. 2008
  9. pmc A role for MEIS1 in MLL-fusion gene leukemia
    Ashish R Kumar
    Masonic Cancer Center, Minneapolis, MN 55455, USA
    Blood 113:1756-8. 2009
  10. ncbi request reprint Multi-group cancer outlier differential gene expression detection
    Fang Liu
    Division of Biostatistics, School of Public Health, University of Minnesota, Minneapolis, MN 55455, USA
    Comput Biol Chem 31:65-71. 2007

Collaborators

Detail Information

Publications24

  1. ncbi request reprint Cancer outlier differential gene expression detection
    Baolin Wu
    Division of Biostatistics, School of Public Health, University of Minnesota, A460 Mayo Building, MMC 303, Minneapolis, MN 55455, USA
    Biostatistics 8:566-75. 2007
    ..The proposed method often has more detection power and smaller false discovery rates. Supplementary information can be found at http://www.biostat.umn.edu/~baolin/research/ort.html...
  2. ncbi request reprint Levitronix ventricular assist devices as a bridge to recovery after profound biventricular heart failure associated with pulmonary aspergillosis
    Bryan A Whitson
    Department of Surgery, Division of Cardiovascular and Thoracic Surgery, University of Minnesota, Minneapolis, Minnesota 55455, USA
    J Heart Lung Transplant 26:345-9. 2007
    ..Ventricular assist devices should be strongly considered, as bridges to recovery, to support patients with acute myocardial dysfunction associated with sepsis while the underlying infection is treated...
  3. doi request reprint Minimally invasive versus open Roux-en-Y gastric bypass: effect on immune effector cells
    Bryan A Whitson
    Department of Surgery, University of Minnesota Medical School, Minneapolis, Minnesota 55455, USA
    Surg Obes Relat Dis 5:181-93. 2009
    ..We hypothesized that the open approach to Roux-en-Y gastric bypass (RYGB) has a more deleterious, negative, quantifiable effect on the peripheral blood mononuclear cells than does the MIS approach...
  4. ncbi request reprint Evolution of clipping for thoracoscopic sympathectomy in symptomatic hyperhidrosis
    Bryan A Whitson
    Section of Thoracic and Foregut Surgery, University of Minnesota, Department of Surgery and Center for Minimally Invasive Surgery, Minneapolis, MN 55455, USA
    Surg Laparosc Endosc Percutan Tech 17:287-90. 2007
    ..Severe hyperhidrosis is treated by thoracic sympathetic chain interrupting through chain transection or clipping. Our study compared the efficacy of these 2 methods...
  5. ncbi request reprint Video-assisted thoracoscopic surgery is more favorable than thoracotomy for resection of clinical stage I non-small cell lung cancer
    Bryan A Whitson
    Department of Surgery, Section of Thoracic and Foregut Surgery, University of Minnesota Medical Center, Minneapolis, Minnesota 55455, USA
    Ann Thorac Surg 83:1965-70. 2007
    ..We compared the operative characteristics and postoperative course for patients with clinical stage I NSCLC who underwent lobectomy by VATS or thoracotomy...
  6. ncbi request reprint Minimally invasive cancer surgery improves patient survival rates through less perioperative immunosuppression
    B A Whitson
    Section of Thoracic and Foregut Surgery, University of Minnesota, Department of Surgery, MMC 207, 420 Delaware St SE, Minneapolis, MN 55455, USA
    Med Hypotheses 68:1328-32. 2007
    ..A deeper understanding of the integral components of the immune response to surgery would open the door for immunomodulation strategies and be of great clinical utility in guiding neoadjuvant, surgical, or adjuvant therapeutic decisions...
  7. ncbi request reprint Spontaneous posterior rectus sheath hernia: a new clinical entity?
    B A Whitson
    Department of Surgery, University of Minnesota, MMC 195, 420 Delaware St SE, Minneapolis, MN 55455, USA
    Hernia 11:445-7. 2007
    ..This is accompanied with a review of the literature and the suggestion that spontaneous posterior rectus sheath herniation is possibly a separate clinical entity...
  8. doi request reprint Thoracoscopic versus thoracotomy approaches to lobectomy: differential impairment of cellular immunity
    Bryan A Whitson
    Department of Surgery, University of Minnesota, Minneapolis, Minnesota, USA
    Ann Thorac Surg 86:1735-44. 2008
    ..Specifically, we assessed the cytotoxic capacity of peripheral blood mononuclear cells (PBMCs) of patients undergoing lobectomy for non-small-cell lung cancer by either VATS or thoracotomy...
  9. pmc A role for MEIS1 in MLL-fusion gene leukemia
    Ashish R Kumar
    Masonic Cancer Center, Minneapolis, MN 55455, USA
    Blood 113:1756-8. 2009
    ..Targeting MEIS1 may have therapeutic potential for treating leukemias expressing this transcription factor...
  10. ncbi request reprint Multi-group cancer outlier differential gene expression detection
    Fang Liu
    Division of Biostatistics, School of Public Health, University of Minnesota, Minneapolis, MN 55455, USA
    Comput Biol Chem 31:65-71. 2007
    ..Supplementary information can be found at http://www.biostat.umn.edu/~baolin/research/orf.html...
  11. pmc On the geometric modeling approach to empirical null distribution estimation for empirical Bayes modeling of multiple hypothesis testing
    Baolin Wu
    Division of Biostatistics, School of Public Health, University of Minnesota, Minneapolis, MN 55455, USA
    Comput Biol Chem 43:17-22. 2013
    ..Through simulations and applications to two public microarray data, we will illustrate its competitive performance...
  12. ncbi request reprint Differential gene expression detection and sample classification using penalized linear regression models
    Baolin Wu
    Division of Biostatistics, School of Public Health, University of Minnesota, A460 Mayo Building, MMC 303, Minneapolis, MN 55455, USA
    Bioinformatics 22:472-6. 2006
    ..using the (1) penalized regression models. And we show that the penalized linear regression models provide a rigorous and unified statistical framework for sample classification and differential gene expression detection...
  13. pmc Quantitative proteomics reveals myosin and actin as promising saliva biomarkers for distinguishing pre-malignant and malignant oral lesions
    Ebbing P de Jong
    Department of Biochemistry, Molecular Biology and Biophysics, University of Minnesota, Minneapolis, Minnesota, USA
    PLoS ONE 5:e11148. 2010
    ..A test for proteins, ones found in non-invasively-collected whole saliva and whose abundances distinguish these lesion types, would meet this critical need...
  14. ncbi request reprint Parametric and nonparametric FDR estimation revisited
    Baolin Wu
    Division of Biostatistics, School of Public Health, University of Minnesota, Minneapolis, Minnesota 55455, USA
    Biometrics 62:735-44. 2006
    ..Based on our results, we advocate using the parametric approach, or directly modeling the test statistics using the empirical Bayes method...
  15. pmc Protein expression profile of rat type two alveolar epithelial cells during hyperoxic stress and recovery
    Maneesh Bhargava
    MMC 276, 420 Delaware St SE, Minneapolis, MN 55455
    Am J Physiol Lung Cell Mol Physiol 305:L604-14. 2013
    ..We concluded that coherent changes occur in the AT2 cell proteome in response to hyperoxic stress. These findings offer guidance regarding the specific molecular mechanisms governing repair of the injured lung. ..
  16. pmc Sparse regularized discriminant analysis with application to microarrays
    Ran Li
    Division of Biostatistics, School of Public Health University of Minnesota, Minneapolis, MN 55455, USA
    Comput Biol Chem 39:14-9. 2012
    ..We will illustrate its competitive performance through simulation studies and applications to public microarray data...
  17. doi request reprint Robust and efficient identification of biomarkers by classifying features on graphs
    TaeHyun Hwang
    Department of Computer Science and Engineering, University of Minnesota, Twin Cities, Bioinformatics Core, Mayo Clinic College of Medicine, Rochester, MN, USA
    Bioinformatics 24:2023-9. 2008
    ..In addition, although designed for classifying features, our algorithm can also simultaneously classify test samples for disease prognosis/diagnosis...
  18. pmc Cerebral malaria in children is associated with long-term cognitive impairment
    Chandy C John
    Department of Pediatrics, University of Minnesota Medical School, Minneapolis, Minnesota, USA
    Pediatrics 122:e92-9. 2008
    ..This study was conducted to determine the long-term effects of cerebral malaria on the cognitive function of these children...
  19. pmc Functional group-based linkage analysis of gene expression trait loci
    Na Li
    Division of Biostatistics, University of Minnesota, A460 Mayo Building MMC 303, 420 Delaware Street Southeast, Minneapolis, Minnesota 55126, USA
    BMC Proc 1:S117. 2007
    ..Future research is needed to develop rigorous methods in mapping of genes affecting the expression of a group of transcripts...
  20. doi request reprint Proteome of human calcium kidney stones
    Benjamin K Canales
    Department of Urology, University of Minnesota, Minneapolis, Minnesota, USA
    Urology 76:1017.e13-20. 2010
    ..If this is true, we theorize that differences will be seen within the organic portion (matrix) of CaOx stones compared with CaP stones using a mass spectroscopy (MS) approach...
  21. pmc PSMIX: an R package for population structure inference via maximum likelihood method
    Baolin Wu
    Division of Biostatistics, School of Public Health, University of Minnesota, Minneapolis, MN, USA
    BMC Bioinformatics 7:317. 2006
    ..However, these Bayesian methods demand intensive computation resources and may run into convergence problem in Markov Chain Monte Carlo based posterior samplings...
  22. pmc LTQ-iQuant: A freely available software pipeline for automated and accurate protein quantification of isobaric tagged peptide data from LTQ instruments
    Getiria Onsongo
    Department of Computer Science and Engineering, University of Minnesota, Minneapolis, MN, USA
    Proteomics 10:3533-8. 2010
    ..LTQ-iQuant should make LTQ instruments and isobaric peptide tagging accessible to more proteomic researchers...
  23. pmc Malignant transformation initiated by Mll-AF9: gene dosage and critical target cells
    Weili Chen
    University of Minnesota Cancer Center, University of Minnesota, 420 Delaware Street S E, Minneapolis, MN 55455, USA
    Cancer Cell 13:432-40. 2008
    ..Mll-AF9 upregulated expression of 192 genes in both LSK and progenitor cells, but to higher levels in LSKs than in committed myeloid progenitors...
  24. ncbi request reprint Differential gene expression detection using penalized linear regression models: the improved SAM statistics
    Baolin Wu
    Division of Biostatistics, School of Public Health, University of Minnesota, A460 Mayo Building, MMC 303, Minneapolis, MN 55455, USA
    Bioinformatics 21:1565-71. 2005
    ..We will show that the penalized test statistics intuitively makes sense and through applications we illustrate its good performance...