Brandie D Wagner

Summary

Affiliation: University of Colorado Denver
Country: USA

Publications

  1. pmc Application of two-part statistics for comparison of sequence variant counts
    Brandie D Wagner
    Department of Biostatistics and Informatics, Colorado School of Public Health, University of Colorado Denver, Aurora, Colorado, United States of America
    PLoS ONE 6:e20296. 2011
  2. doi request reprint Induction of diabetes in the RIP-B7.1 mouse model is critically dependent on TLR3 and MyD88 pathways and is associated with alterations in the intestinal microbiome
    Aimon K Alkanani
    Barbara Davis Center for Childhood Diabetes, University of Colorado Denver, Aurora, CO
    Diabetes 63:619-31. 2014
  3. pmc Reliability of quantitative real-time PCR for bacterial detection in cystic fibrosis airway specimens
    Edith T Zemanick
    Department of Pediatrics, Colorado School of Public Health, University of Colorado Denver, Aurora, Colorado, United States of America
    PLoS ONE 5:e15101. 2010
  4. doi request reprint The role of the intestinal microbiota in type 1 diabetes
    Naoko Hara
    Barbara Davis Center for Childhood Diabetes, University of Colorado Denver, Aurora, CO 80045, USA
    Clin Immunol 146:112-9. 2013
  5. pmc Inflammation and airway microbiota during cystic fibrosis pulmonary exacerbations
    Edith T Zemanick
    Department of Pediatrics, University of Colorado School of Medicine, Aurora, Colorado, United States of America
    PLoS ONE 8:e62917. 2013
  6. pmc Inhibition of the P50 cerebral evoked response to repeated auditory stimuli: results from the Consortium on Genetics of Schizophrenia
    Ann Olincy
    Department of Psychiatry, Veterans Affairs Denver Medical Center VISN 19 MIRECC, CO 80045, USA
    Schizophr Res 119:175-82. 2010
  7. pmc The applicability of urinary creatinine as a method of specimen normalization in the cystic fibrosis population
    Brandie D Wagner
    Department of Biostatistics and Informatics, Colorado School of Public Health, University of Colorado Denver, 13001 E 17th Place, B119, Aurora, CO, 80045, USA
    J Cyst Fibros 9:212-6. 2010
  8. pmc Explicet: graphical user interface software for metadata-driven management, analysis and visualization of microbiome data
    Charles E Robertson
    Department of Molecular, Cellular and Developmental Biology, University of Colorado, Boulder, CO 80309, USA, University of Colorado Microbiome Research Consortium, Department of Pediatrics, University of Colorado Anschutz Medical Campus, Department of Biostatistics and Informatics, Colorado School of Public Health, Aurora, CO 80045, USA, Incubix Incorporated, Boulder, CO 80301, USA and Department of Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA
    Bioinformatics 29:3100-1. 2013
  9. doi request reprint Abnormal infant pulmonary function in young children with neuroendocrine cell hyperplasia of infancy
    Gwendolyn S Kerby
    Department of Pediatrics, Section of Pulmonary Medicine, University of Colorado School of Medicine and The Breathing Institute, Children s Hospital Colorado, Aurora, Colorado
    Pediatr Pulmonol 48:1008-15. 2013
  10. pmc Novel device to sample the esophageal microbiome--the esophageal string test
    Sophie A Fillon
    Department of Pediatrics, Section of Gastroenterology, Hepatology and Nutrition, Digestive Health Institute, Children s Hospital Colorado, University of Colorado Denver, School of Medicine, Aurora, Colorado, United States of America
    PLoS ONE 7:e42938. 2012

Collaborators

Detail Information

Publications13

  1. pmc Application of two-part statistics for comparison of sequence variant counts
    Brandie D Wagner
    Department of Biostatistics and Informatics, Colorado School of Public Health, University of Colorado Denver, Aurora, Colorado, United States of America
    PLoS ONE 6:e20296. 2011
    ..We show superior performance of the two-part statistic for analysis of sequence data. The improved performance in microbial ecology studies was independent of study type and sequence technology used...
  2. doi request reprint Induction of diabetes in the RIP-B7.1 mouse model is critically dependent on TLR3 and MyD88 pathways and is associated with alterations in the intestinal microbiome
    Aimon K Alkanani
    Barbara Davis Center for Childhood Diabetes, University of Colorado Denver, Aurora, CO
    Diabetes 63:619-31. 2014
    ..These data imply that the induction of diabetes in the RIP-B7.1 model is critically dependent on TLR3 and MyD88 pathways, and involves modulation of the intestinal microbiota. ..
  3. pmc Reliability of quantitative real-time PCR for bacterial detection in cystic fibrosis airway specimens
    Edith T Zemanick
    Department of Pediatrics, Colorado School of Public Health, University of Colorado Denver, Aurora, Colorado, United States of America
    PLoS ONE 5:e15101. 2010
    ..influenzae from CF airway samples. By reliably quantifying fastidious airway bacteria, qPCR may improve our understanding of polymicrobial CF lung infections, progression of lung disease and ultimately improve antimicrobial treatments...
  4. doi request reprint The role of the intestinal microbiota in type 1 diabetes
    Naoko Hara
    Barbara Davis Center for Childhood Diabetes, University of Colorado Denver, Aurora, CO 80045, USA
    Clin Immunol 146:112-9. 2013
    ..A better understanding of the interplay between microbes and innate immune pathways in early disease stages holds promise for the design of immune interventions and disease prevention in genetically susceptible individuals...
  5. pmc Inflammation and airway microbiota during cystic fibrosis pulmonary exacerbations
    Edith T Zemanick
    Department of Pediatrics, University of Colorado School of Medicine, Aurora, Colorado, United States of America
    PLoS ONE 8:e62917. 2013
    ..Molecular microbiologic approaches detect complex microbiota from CF airway samples taken during PEx. The relationship between airway microbiota, inflammation, and lung function during CF PEx is not well understood...
  6. pmc Inhibition of the P50 cerebral evoked response to repeated auditory stimuli: results from the Consortium on Genetics of Schizophrenia
    Ann Olincy
    Department of Psychiatry, Veterans Affairs Denver Medical Center VISN 19 MIRECC, CO 80045, USA
    Schizophr Res 119:175-82. 2010
    ....
  7. pmc The applicability of urinary creatinine as a method of specimen normalization in the cystic fibrosis population
    Brandie D Wagner
    Department of Biostatistics and Informatics, Colorado School of Public Health, University of Colorado Denver, 13001 E 17th Place, B119, Aurora, CO, 80045, USA
    J Cyst Fibros 9:212-6. 2010
    ..Urinary creatinine (UCr) is often used to adjust for urine analyte concentration. We aim to explore the applicability of UCr as a normalization method in a cystic fibrosis (CF) population during hospitalization...
  8. pmc Explicet: graphical user interface software for metadata-driven management, analysis and visualization of microbiome data
    Charles E Robertson
    Department of Molecular, Cellular and Developmental Biology, University of Colorado, Boulder, CO 80309, USA, University of Colorado Microbiome Research Consortium, Department of Pediatrics, University of Colorado Anschutz Medical Campus, Department of Biostatistics and Informatics, Colorado School of Public Health, Aurora, CO 80045, USA, Incubix Incorporated, Boulder, CO 80301, USA and Department of Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA
    Bioinformatics 29:3100-1. 2013
    ....
  9. doi request reprint Abnormal infant pulmonary function in young children with neuroendocrine cell hyperplasia of infancy
    Gwendolyn S Kerby
    Department of Pediatrics, Section of Pulmonary Medicine, University of Colorado School of Medicine and The Breathing Institute, Children s Hospital Colorado, Aurora, Colorado
    Pediatr Pulmonol 48:1008-15. 2013
    ..Lung function in children with neuroendocrine cell hyperplasia of infancy (NEHI) and correlations with future clinical outcomes are needed to guide clinical management...
  10. pmc Novel device to sample the esophageal microbiome--the esophageal string test
    Sophie A Fillon
    Department of Pediatrics, Section of Gastroenterology, Hepatology and Nutrition, Digestive Health Institute, Children s Hospital Colorado, University of Colorado Denver, School of Medicine, Aurora, Colorado, United States of America
    PLoS ONE 7:e42938. 2012
    ..We conclude that the minimally invasive EST can serve as a useful device for study of the esophageal microbiome...
  11. pmc Evaluation of circulating proteins and hemodynamics towards predicting mortality in children with pulmonary arterial hypertension
    Brandie D Wagner
    Department of Biostatistics and Informatics, Colorado School of Public Health, University of Colorado Denver, Aurora, Colorado, United States of America
    PLoS ONE 8:e80235. 2013
    ..The aim of this study was to identify a combination of clinical and molecular predictors of survival in PAH...
  12. pmc Pulmonary exacerbations in cystic fibrosis with negative bacterial cultures
    Edith T Zemanick
    Department of Pediatrics, University of Colorado Denver, Aurora, Colorado 80045, USA
    Pediatr Pulmonol 45:569-77. 2010
    ..Exacerbations are often associated with characteristic airway bacteria [CF related bacteria (CFRB)]. However, some patients do not have CFRB detected by culture during exacerbations...
  13. doi request reprint Prevention of virus-induced type 1 diabetes with antibiotic therapy
    Naoko Hara
    Barbara Davis Center for Childhood Diabetes, University of Colorado Denver, Aurora, CO 80045, USA
    J Immunol 189:3805-14. 2012
    ..The data suggest that gut microbiota may be involved in promoting virus-induced T1D in the LEW1.WR1 rat model...