M W J van Passel

Summary

Affiliation: University of Arizona
Country: USA

Publications

  1. ncbi request reprint A biased detection of the flexible genome content: missing large restriction fragments in comparative genomics
    M W J van Passel
    Department of Biochemistry and Biophysics, University of Arizona, Tucson, AZ 85721, USA
    J Microbiol Methods 67:616-8. 2006
  2. pmc The reach of the genome signature in prokaryotes
    Mark W J van Passel
    Centraalbureau voor Schimmelcultures CBS, Uppsalalaan 8, Utrecht, The Netherlands
    BMC Evol Biol 6:84. 2006
  3. pmc Gene decay in archaea
    M W J van Passel
    Department of Biochemistry and Molecular Biophysics, University of Arizona, 1007 East Lowell Street, Tucson, AZ 85721, USA
    Archaea 2:137-43. 2007
  4. ncbi request reprint Selection on the genic location of disruptive elements
    M W J van Passel
    Department of Biochemistry and Molecular Biophysics, University of Arizona, 1007 East Lowell Street, Tucson, AZ 85721, USA
    Trends Genet 23:601-4. 2007
  5. pmc An in vitro strategy for the selective isolation of anomalous DNA from prokaryotic genomes
    M W J van Passel
    Department of Medical Microbiology, Academic Medical Center, Amsterdam, The Netherlands
    Nucleic Acids Res 32:e114. 2004
  6. pmc An acquisition account of genomic islands based on genome signature comparisons
    M W J van Passel
    Department of Medical Microbiology, Academic Medical Center, Amsterdam, The Netherlands
    BMC Genomics 6:163. 2005
  7. pmc Direct detection of methylation in genomic DNA
    A Bart
    Department of Medical Microbiology, Academic Medical Center Amsterdam, The Netherlands
    Nucleic Acids Res 33:e124. 2005

Detail Information

Publications7

  1. ncbi request reprint A biased detection of the flexible genome content: missing large restriction fragments in comparative genomics
    M W J van Passel
    Department of Biochemistry and Biophysics, University of Arizona, Tucson, AZ 85721, USA
    J Microbiol Methods 67:616-8. 2006
    ..Excluding important large restriction fragments from the actual hybridisation or from post-hybridisation amplification reactions compromise the comprehensiveness of these studies...
  2. pmc The reach of the genome signature in prokaryotes
    Mark W J van Passel
    Centraalbureau voor Schimmelcultures CBS, Uppsalalaan 8, Utrecht, The Netherlands
    BMC Evol Biol 6:84. 2006
    ..Here we rigorously test the phylogenetic signal of the genome signature, which consists of the genome-specific relative frequencies of dinucleotides, on 334 sequenced prokaryotic genome sequences...
  3. pmc Gene decay in archaea
    M W J van Passel
    Department of Biochemistry and Molecular Biophysics, University of Arizona, 1007 East Lowell Street, Tucson, AZ 85721, USA
    Archaea 2:137-43. 2007
    ..Although archaea seem to retain pseudogenes longer than do bacteria, most archaeal genomes have unique repertoires of pseudogenes...
  4. ncbi request reprint Selection on the genic location of disruptive elements
    M W J van Passel
    Department of Biochemistry and Molecular Biophysics, University of Arizona, 1007 East Lowell Street, Tucson, AZ 85721, USA
    Trends Genet 23:601-4. 2007
    ....
  5. pmc An in vitro strategy for the selective isolation of anomalous DNA from prokaryotic genomes
    M W J van Passel
    Department of Medical Microbiology, Academic Medical Center, Amsterdam, The Netherlands
    Nucleic Acids Res 32:e114. 2004
    ..meningitidis MC58 genome. In conclusion, this strategy allows the selective isolation of aDNA from prokaryotic genomes by a simple restriction digest-amplification-cloning-sequencing scheme...
  6. pmc An acquisition account of genomic islands based on genome signature comparisons
    M W J van Passel
    Department of Medical Microbiology, Academic Medical Center, Amsterdam, The Netherlands
    BMC Genomics 6:163. 2005
    ..We assessed the compositional similarity and putative acquisition account of these GIs using the genome signature. For this analysis we developed a new algorithm, available as a web application...
  7. pmc Direct detection of methylation in genomic DNA
    A Bart
    Department of Medical Microbiology, Academic Medical Center Amsterdam, The Netherlands
    Nucleic Acids Res 33:e124. 2005
    ..In conclusion, we present a method to detect all three natural types of DNA methylation in bacterial genomic DNA. This provides the possibility to define the complete methylome of any prokaryote...