Research Topics
| P Tarczy-HornochSummaryAffiliation: University of Washington Country: USA Publications
Research Grants
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Detail Information
Publications
Evaluating the accuracy of a functional SNP annotation systemTerry H Shen
Departments of Biomedical and Health Informatics, University of Washington, Seattle, WA, USA
BMC Bioinformatics 10:S11. 2009..To evaluate the SNPit system, we developed an alternative gold standard to measure accuracy using sensitivity and specificity. The results of our evaluation demonstrated that our alternative gold standard produced encouraging results...- On the persistence of supplementary resources in biomedical publicationsNicholas R Anderson
Division of Biomedical Health Informatics, University of Washington, USA
BMC Bioinformatics 7:260. 2006..One aspect of this problem can be demonstrated by evaluating the persistence of supplementary data associated with published biomedical papers... 
Surfactant replacement increases compliance in premature lamb lungs during partial liquid ventilation in situP Tarczy-Hornoch
Departments of Pediatrics, Medicine, and Physiology Biophysics, University of Washington, Seattle, Washington 98195, USA
J Appl Physiol 84:1316-22. 1998....- GeneClinics: a hybrid text/data electronic publishing model using XML applied to clinical genetic testingP Tarczy-Hornoch
Department of Pediatrics, University of Washington, Seattle 98195 6320, USA
J Am Med Inform Assoc 7:267-76. 2000..The ultimate goal is to have an entry in GeneClinics for each entry in the GeneTests directory of medical genetics laboratories-that is, for each disease for which clinical genetic testing is available... - A qualitative study of the implementation of a bioinformatics tool in a biological research laboratoryNicholas R Anderson
Department of Biomedical and Health Informatics, University of Washington, P O Box 357240, Seattle, WA 98195 7240, United States
Int J Med Inform 76:821-8. 2007..To explore how the implementation of a comprehensive new bioinformatics analysis system would affect workflow, collaboration and information management in a small genetic research lab... - The University of Washington Health Sciences Library BioCommons: an evolving Northwest biomedical research information support infrastructureMark Minie
Health Sciences Libraries and Information Center and Department of Biomedical and Health Informatics, University of Washington, Seattle, USA
J Med Libr Assoc 94:321-9. 2006..NEXT STEPS/FUTURE DIRECTIONS: BioCommons is developing novel collaborative Web resources to distribute bioinformatics tools and is experimenting with Web-based competency training in bioinformation resource use... - Data integration and genomic medicineBrenton Louie
Department of Medical Education and Biomedical Informatics, University of Washington, Seattle, USA
J Biomed Inform 40:5-16. 2007..We conclude this paper with challenges still not addressed in genomic medicine and gaps that remain in data integration research to facilitate genomic medicine... - Incorporating ideas from computer-supported cooperative workWanda Pratt
School of Management and Information Systems, University of Missouri, Rolla, MO, USA
J Biomed Inform 37:128-37. 2004.... - Resident documentation discrepancies in a neonatal intensive care unitAaron E Carroll
Robert Wood Johnson Clinical Scholars Program, University of Washington, Seattle, Washington 98195 7183, USA
Pediatrics 111:976-80. 2003..Medical errors are common and potentially dangerous. Little is known about the role of documentation errors... - Issues in biomedical research data management and analysis: needs and barriersNicholas R Anderson
University of Washington, Department of Medical Education and Biomedical Informatics, Box 357240, Seattle, WA 98195 7420, USA
J Am Med Inform Assoc 14:478-88. 2007..A. Identify the current state of data management needs of academic biomedical researchers. B. Explore their anticipated data management and analysis needs. C. Identify barriers to addressing those needs... - Evaluation of probabilistic and logical inference for a SNP annotation systemTerry H Shen
Department of Biomedical and Health Informatics, University of Washington, Seattle, WA 98195 7240, USA
J Biomed Inform 43:407-18. 2010..Evaluations of the methods demonstrate the overall strong predictive value of logical, and logical with probabilistic, inference applied to the domain of SNP annotation... - SNPit: a federated data integration system for the purpose of functional SNP annotationTerry H Shen
Department of Biomedical and Health Informatics, University of Washington, Seattle, WA 98195 7240, USA
Comput Methods Programs Biomed 95:181-9. 2009..A tool that can help to integrate and analyze the potential functional significance of SNPs is important for understanding the results from genome wide association studies... - Incorporating collaboratory concepts into informatics in support of translational interdisciplinary biomedical researchE Sally Lee
Division of Biomedical and Health Informatics, Department of Medical Education and Biomedical Informatics, University of Washington, Seattle, WA 98195 7420, USA
Int J Med Inform 78:10-21. 2009.... - The potential for automated question answering in the context of genomic medicine: an assessment of existing resources and properties of answersCasey Lynnette Overby
Department of Medical Education and Biomedical Informatics, University of Washington, Seattle, WA, USA
BMC Bioinformatics 10:S8. 2009.... - Participatory (re)design of a sociotechnical healthcare delivery system: the Group Health Patient-Centered Medical HomeJames T Tufano
University of Washington School of Medicine, Seattle, Washington, USA
Stud Health Technol Inform 157:59-65. 2010..The emergent PCMH healthcare delivery system comprises both opportunistic point-of-care and outreach components, many of which leverage and enhance the organization's health information and communication technologies... - People and organizational issues in research systems implementationJoan S Ash
Department of Medical Informatics and Clinical Epidemiology, School of Medicine, Oregon Health and Science University, 3181 SW Sam Jackson Park Road, Portland, OR 97239 3098, USA
J Am Med Inform Assoc 15:283-9. 2008..This article summarizes that discussion, which covered organizational issues, implications of how knowledge about clinical systems implementation can inform research systems implementation, and those issues unique to each kind of system... - The effect of point-of-care personal digital assistant use on resident documentation discrepanciesAaron E Carroll
Children s Health Services Research, Indiana University School of Medicine, Indianapolis, Indiana 46202, USA
Pediatrics 113:450-4. 2004..We recently found documentation discrepancies in 60% of resident daily-progress notes with respect to patient weight, medications, or vascular lines. To what extent information systems can decrease such discrepancies is unknown... - The BioMediator system as a data integration tool to answer diverse biologic queriesLoren Donelson
University of Washington, Seattle, WA 98195-7240, USA
Medinfo 11:768-72. 2004..Finally, we discuss the system's flexibility and generalized approach and give examples of how the system can be extended for a variety of objectives... - GeneTests-GeneClinics: genetic testing information for a growing audienceRoberta A Pagon
University of Washington, Seattle, Washington, USA
Hum Mutat 19:501-9. 2002..The use of these combined resources has grown to approximately 3,200 visits/day... - Consumer health information on the InternetAaron E Carroll
J Am Med Inform Assoc 9:402-3; author reply 403-5. 2002
Research Grants
- GENESEEK: DATA INTEGRATION SYSTEM FOR GENETIC DATABASESPeter Tarczy Hornoch; Fiscal Year: 2002..abstract_text> ..
- BioMediator: Biologic Data Integration& Analysis SystemPeter Tarczy Hornoch; Fiscal Year: 2005..abstract_text> ..