Mark Stapleton

Summary

Affiliation: University of California
Country: USA

Publications

  1. pmc The Drosophila gene collection: identification of putative full-length cDNAs for 70% of D. melanogaster genes
    Mark Stapleton
    Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
    Genome Res 12:1294-300. 2002
  2. pmc RNA editing in Drosophila melanogaster: New targets and functional consequences
    Mark Stapleton
    Berkeley Drosophila Genome Project, Department of Genome Biology, Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
    RNA 12:1922-32. 2006
  3. pmc The lords of the genomes
    Mark Stapleton
    Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA 94720, USA
    Genome Biol 5:349. 2004
  4. pmc A Drosophila full-length cDNA resource
    Mark Stapleton
    Berkeley Drosophila Genome Project Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
    Genome Biol 3:RESEARCH0080. 2002
  5. pmc Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions
    Stewart MacArthur
    Genomics Division, Lawrence Berkeley National Laboratory, Cyclotron Road MS 84 181, Berkeley, CA 94720, USA
    Genome Biol 10:R80. 2009
  6. pmc Rapid and efficient cDNA library screening by self-ligation of inverse PCR products (SLIP)
    Roger A Hoskins
    Berkeley Drosophila Genome Project, Department of Genome Biology, Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
    Nucleic Acids Res 33:e185. 2005
  7. doi request reprint Development of expression-ready constructs for generation of proteomic libraries
    Charles Yu
    Department of Genome Dynamics, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
    Methods Mol Biol 723:257-72. 2011
  8. pmc Assessing the impact of comparative genomic sequence data on the functional annotation of the Drosophila genome
    Casey M Bergman
    Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, Berkeley, CA 94720, USA
    Genome Biol 3:RESEARCH0086. 2002
  9. ncbi request reprint High-throughput plasmid cDNA library screening
    Kenneth H Wan
    Department of Genome Sciences, Earnest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, California 94720, USA
    Nat Protoc 1:624-32. 2006
  10. pmc Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence
    Susan E Celniker
    Berkeley Drosophila Genome Project, Department of Genome Sciences, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
    Genome Biol 3:RESEARCH0079. 2002

Detail Information

Publications13

  1. pmc The Drosophila gene collection: identification of putative full-length cDNAs for 70% of D. melanogaster genes
    Mark Stapleton
    Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
    Genome Res 12:1294-300. 2002
    ..This second release of the DGC (DGCr2) contains 5061 additional clones, extending the collection to 10,910 cDNAs representing >70% of the predicted genes in Drosophila...
  2. pmc RNA editing in Drosophila melanogaster: New targets and functional consequences
    Mark Stapleton
    Berkeley Drosophila Genome Project, Department of Genome Biology, Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
    RNA 12:1922-32. 2006
    ..Our results indicate that editing in Drosophila increases the diversity of the proteome, and does so in a manner that has direct functional consequences on protein function...
  3. pmc The lords of the genomes
    Mark Stapleton
    Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA 94720, USA
    Genome Biol 5:349. 2004
  4. pmc A Drosophila full-length cDNA resource
    Mark Stapleton
    Berkeley Drosophila Genome Project Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
    Genome Biol 3:RESEARCH0080. 2002
    ....
  5. pmc Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions
    Stewart MacArthur
    Genomics Division, Lawrence Berkeley National Laboratory, Cyclotron Road MS 84 181, Berkeley, CA 94720, USA
    Genome Biol 10:R80. 2009
    ....
  6. pmc Rapid and efficient cDNA library screening by self-ligation of inverse PCR products (SLIP)
    Roger A Hoskins
    Berkeley Drosophila Genome Project, Department of Genome Biology, Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
    Nucleic Acids Res 33:e185. 2005
    ..Finally, we discuss the relative merits of directed cDNA library screening and RT-PCR approaches...
  7. doi request reprint Development of expression-ready constructs for generation of proteomic libraries
    Charles Yu
    Department of Genome Dynamics, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
    Methods Mol Biol 723:257-72. 2011
    ..These clones are being used to produce a protein complex map of Drosophila from Schneider cells...
  8. pmc Assessing the impact of comparative genomic sequence data on the functional annotation of the Drosophila genome
    Casey M Bergman
    Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, Berkeley, CA 94720, USA
    Genome Biol 3:RESEARCH0086. 2002
    ..It is widely accepted that comparative sequence data can aid the functional annotation of genome sequences; however, the most informative species and features of genome evolution for comparison remain to be determined...
  9. ncbi request reprint High-throughput plasmid cDNA library screening
    Kenneth H Wan
    Department of Genome Sciences, Earnest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, California 94720, USA
    Nat Protoc 1:624-32. 2006
    ..Here we describe an adapted, high-throughput protocol intended for the recovery of specific, full-length clones from plasmid cDNA libraries in 5 d...
  10. pmc Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence
    Susan E Celniker
    Berkeley Drosophila Genome Project, Department of Genome Sciences, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
    Genome Biol 3:RESEARCH0079. 2002
    ....
  11. pmc Annotation of the Drosophila melanogaster euchromatic genome: a systematic review
    Sima Misra
    Department of Molecular and Cell Biology, University of California, Life Sciences Addition, Berkeley, CA 94720 3200, USA
    Genome Biol 3:RESEARCH0083. 2002
    ....
  12. pmc Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm
    Xiao Yong Li
    Genomics Division, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America
    PLoS Biol 6:e27. 2008
    ....
  13. pmc Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences
    Robert L Strausberg
    National Cancer Institute, Bethessda, MD 20892 2580, USA
    Proc Natl Acad Sci U S A 99:16899-903. 2002
    ..All MGC sequences and clones are available without restriction through public databases and clone distribution networks (see http:mgc.nci.nih.gov)...