Michael E Smoot

Summary

Affiliation: University of California
Country: USA

Publications

  1. pmc Improving pairwise sequence alignment accuracy using near-optimal protein sequence alignments
    Michael L Sierk
    Department of Biochemistry and Molecular Genetics, University of Virginia, Charlottesville, VA 22908, USA
    BMC Bioinformatics 11:146. 2010
  2. pmc Cytoscape 2.8: new features for data integration and network visualization
    Michael E Smoot
    Department of Medicine, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA
    Bioinformatics 27:431-2. 2011
  3. pmc A travel guide to Cytoscape plugins
    Rintaro Saito
    Department of Medicine, University of California, San Diego, La Jolla, California, USA
    Nat Methods 9:1069-76. 2012

Collaborators

Detail Information

Publications3

  1. pmc Improving pairwise sequence alignment accuracy using near-optimal protein sequence alignments
    Michael L Sierk
    Department of Biochemistry and Molecular Genetics, University of Virginia, Charlottesville, VA 22908, USA
    BMC Bioinformatics 11:146. 2010
    ..Thus, we have examined a range of suboptimal sequence alignments and a range of scoring parameters to understand better which sequence alignments are likely to be more structurally accurate...
  2. pmc Cytoscape 2.8: new features for data integration and network visualization
    Michael E Smoot
    Department of Medicine, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA
    Bioinformatics 27:431-2. 2011
    ..Availability and implementation: Cytoscape is a desktop Java application released under the Library Gnu Public License (LGPL). Binary install bundles and source code for Cytoscape 2.8 are available for download from http://cytoscape.org...
  3. pmc A travel guide to Cytoscape plugins
    Rintaro Saito
    Department of Medicine, University of California, San Diego, La Jolla, California, USA
    Nat Methods 9:1069-76. 2012
    ..We present a travel guide to the world of plugins, covering the 152 publicly available plugins for Cytoscape 2.5-2.8. We also describe ongoing efforts to distribute, organize and maintain the quality of the collection...