J J Smith

Summary

Affiliation: University of Kentucky
Country: USA

Publications

  1. pmc Salamander Hox clusters contain repetitive DNA and expanded non-coding regions: a typical Hox structure for non-mammalian tetrapod vertebrates?
    STEPHEN RANDAL VOSS
    Department of Biology, University of Kentucky, Lexington, KY 40506, USA
    Hum Genomics 7:9. 2013
  2. pmc Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution
    Jeramiah J Smith
    Department of Biology, University of Kentucky, Lexington, Kentucky, USA
    Nat Genet 45:415-21, 421e1-2. 2013
  3. pmc Genetic consequences of programmed genome rearrangement
    Jeramiah J Smith
    Benaroya Research Institute at Virginia Mason, Seattle, WA 98101, USA
    Curr Biol 22:1524-9. 2012
  4. pmc A living fossil in the genome of a living fossil: Harbinger transposons in the coelacanth genome
    Jeramiah J Smith
    Benaroya Research Institute at Virginia Mason Medical Center, Seattle, WA, USA
    Mol Biol Evol 29:985-93. 2012
  5. pmc From biomedicine to natural history research: EST resources for ambystomatid salamanders
    Srikrishna Putta
    Department of Biology, University of Kentucky, Lexington, KY 40506, USA
    BMC Genomics 5:54. 2004
  6. pmc A comprehensive expressed sequence tag linkage map for tiger salamander and Mexican axolotl: enabling gene mapping and comparative genomics in Ambystoma
    J J Smith
    Department of Biology, University of Kentucky, Lexington, Kentucky 40506, USA
    Genetics 171:1161-71. 2005
  7. pmc Sal-Site: integrating new and existing ambystomatid salamander research and informational resources
    Jeramiah J Smith
    Department of Biology, Spinal Cord and Brain Injury Research Center, University of Kentucky, Lexington, KY 40506, USA
    BMC Genomics 6:181. 2005
  8. pmc Gene order data from a model amphibian (Ambystoma): new perspectives on vertebrate genome structure and evolution
    Jeramiah J Smith
    Department of Biology and Spinal Cord and Brain Injury Research Center, University of Kentucky, Lexington, KY 40506, USA
    BMC Genomics 7:219. 2006
  9. pmc Bird and mammal sex-chromosome orthologs map to the same autosomal region in a salamander (ambystoma)
    Jeramiah J Smith
    Department of Biology and Spinal Cord and Brian Injury Research Center, University of Kentucky, Lexington, Kentucky 40506, USA
    Genetics 177:607-13. 2007
  10. pmc Conserved vertebrate chromosome segments in the large salamander genome
    S R Voss
    Department of Biology, Colorado State University, Fort Collins, CO 80523, USA
    Genetics 158:735-46. 2001

Detail Information

Publications18

  1. pmc Salamander Hox clusters contain repetitive DNA and expanded non-coding regions: a typical Hox structure for non-mammalian tetrapod vertebrates?
    STEPHEN RANDAL VOSS
    Department of Biology, University of Kentucky, Lexington, KY 40506, USA
    Hum Genomics 7:9. 2013
    ..Our results suggest that Hox cluster expansion and transposon accumulation are common features of non-mammalian tetrapod vertebrates...
  2. pmc Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution
    Jeramiah J Smith
    Department of Biology, University of Kentucky, Lexington, Kentucky, USA
    Nat Genet 45:415-21, 421e1-2. 2013
    ..The lamprey genome provides an important resource for reconstructing vertebrate origins and the evolutionary events that have shaped the genomes of extant organisms...
  3. pmc Genetic consequences of programmed genome rearrangement
    Jeramiah J Smith
    Benaroya Research Institute at Virginia Mason, Seattle, WA 98101, USA
    Curr Biol 22:1524-9. 2012
    ....
  4. pmc A living fossil in the genome of a living fossil: Harbinger transposons in the coelacanth genome
    Jeramiah J Smith
    Benaroya Research Institute at Virginia Mason Medical Center, Seattle, WA, USA
    Mol Biol Evol 29:985-93. 2012
    ..In addition, these analyses further reinforce the broad utility of the coelacanth genome and other "outgroup" genomes in understanding the ancestry and evolution of vertebrate genes and genomes...
  5. pmc From biomedicine to natural history research: EST resources for ambystomatid salamanders
    Srikrishna Putta
    Department of Biology, University of Kentucky, Lexington, KY 40506, USA
    BMC Genomics 5:54. 2004
    ..We developed ESTs for Mexican axolotl (Ambystoma mexicanum) and Eastern tiger salamander (A. tigrinum tigrinum), species with deep and diverse research histories...
  6. pmc A comprehensive expressed sequence tag linkage map for tiger salamander and Mexican axolotl: enabling gene mapping and comparative genomics in Ambystoma
    J J Smith
    Department of Biology, University of Kentucky, Lexington, Kentucky 40506, USA
    Genetics 171:1161-71. 2005
    ..This new collection of EST-based PCR markers will better enable the Ambystoma system by facilitating development of new molecular probes, and the linkage map will allow comparative studies of this important vertebrate group...
  7. pmc Sal-Site: integrating new and existing ambystomatid salamander research and informational resources
    Jeramiah J Smith
    Department of Biology, Spinal Cord and Brain Injury Research Center, University of Kentucky, Lexington, KY 40506, USA
    BMC Genomics 6:181. 2005
    ..Sal-Site is accessible at http://www.ambystoma.org...
  8. pmc Gene order data from a model amphibian (Ambystoma): new perspectives on vertebrate genome structure and evolution
    Jeramiah J Smith
    Department of Biology and Spinal Cord and Brain Injury Research Center, University of Kentucky, Lexington, KY 40506, USA
    BMC Genomics 7:219. 2006
    ....
  9. pmc Bird and mammal sex-chromosome orthologs map to the same autosomal region in a salamander (ambystoma)
    Jeramiah J Smith
    Department of Biology and Spinal Cord and Brian Injury Research Center, University of Kentucky, Lexington, Kentucky 40506, USA
    Genetics 177:607-13. 2007
    ..Our study illustrates the importance of an amphibian outgroup perspective in identifying ancestral amniote gene orders and in reconstructing patterns of vertebrate sex-chromosome evolution...
  10. pmc Conserved vertebrate chromosome segments in the large salamander genome
    S R Voss
    Department of Biology, Colorado State University, Fort Collins, CO 80523, USA
    Genetics 158:735-46. 2001
    ..Thus, comparative gene mapping appears to be an efficient strategy for identifying orthologous loci between ambystomatid salamanders and genomically well-characterized vertebrate model organisms...
  11. pmc Microarray analysis of a salamander hopeful monster reveals transcriptional signatures of paedomorphic brain development
    Robert B Page
    Department of Biology and Spinal Cord and Brain Injury Research Center, University of Kentucky, Lexington, KY 40506, USA
    BMC Evol Biol 10:199. 2010
    ..The basis of paedomorphic development was investigated by comparing temporal patterns of gene transcription between axolotl and tiger salamander larvae (Ambystoma tigrinum tigrinum) that typically undergo a metamorphosis...
  12. pmc Amphibian sex determination: segregation and linkage analysis using members of the tiger salamander species complex (Ambystoma mexicanum and A. t. tigrinum)
    J J Smith
    Department of Biology and Spinal Cord, Brian Injury Research Center, University of Kentucky, Lexington, KY, USA
    Heredity (Edinb) 102:542-8. 2009
    ..Localization of ambysex sets the stage for gene identification and provides important tools for studying the effect of sex in laboratory and natural populations of this model amphibian system...
  13. ncbi request reprint Transcriptional and phylogenetic analysis of five complete ambystomatid salamander mitochondrial genomes
    Amy K Samuels
    University of Kentucky, Department of Biology, Lexington, KY 40506, USA
    Gene 349:43-53. 2005
    ..Our results show the benefit of using complete genome mitochondrial information in studies of recently and rapidly diverged taxa...
  14. pmc Effect of thyroid hormone concentration on the transcriptional response underlying induced metamorphosis in the Mexican axolotl (Ambystoma)
    Robert B Page
    Department of Biology, University of Kentucky, Lexington, Kentucky 40506 USA
    BMC Genomics 9:78. 2008
    ..We induced metamorphosis in juvenile Mexican axolotls (Ambystoma mexicanum) using 5 and 50 nM T4, collected epidermal tissue from the head at four time points (Days 0, 2, 12, 28), and used microarray analysis to quantify mRNA abundances...
  15. pmc Genome biology of the cyclostomes and insights into the evolutionary biology of vertebrate genomes
    J J Smith
    Benaroya Research Institute at Virginia Mason, 1201 9th Avenue, Seattle, WA 98101, USA
    Integr Comp Biol 50:130-7. 2010
    ..Validating this premise will require better characterization of the genome sequence and mechanisms of rearrangement in lamprey and hagfish...
  16. pmc Evolution of salamander life cycles: a major-effect quantitative trait locus contributes to discrete and continuous variation for metamorphic timing
    S R Voss
    Department of Biology, University of Kentucky, Lexington, 40506, USA
    Genetics 170:275-81. 2005
    ..We suggest that the evolution of paedomorphosis is associated with genetic changes that delay metamorphic timing in biphasic life cycles...
  17. pmc Genic regions of a large salamander genome contain long introns and novel genes
    Jeramiah J Smith
    Department of Biology and Spinal Cord and Brain Injury Research Center, University of Kentucky, Lexington, KY 40506, USA
    BMC Genomics 10:19. 2009
    ..Sixteen BAC clones from the Mexican axolotl (Ambystoma mexicanum: c-value = 32 x 10(9) bp) were isolated and sequenced to characterize the structure of genic regions...
  18. ncbi request reprint Microarray analysis identifies keratin loci as sensitive biomarkers for thyroid hormone disruption in the salamander Ambystoma mexicanum
    Robert B Page
    Department of Biology and Spinal Cord and Brain Injury Research Center, University of Kentucky, Lexington, KY 40506, USA
    Comp Biochem Physiol C Toxicol Pharmacol 145:15-27. 2007
    ....