Daniel B Sloan

Summary

Affiliation: University of Virginia
Country: USA

Publications

  1. pmc Extensive loss of translational genes in the structurally dynamic mitochondrial genome of the angiosperm Silene latifolia
    Daniel B Sloan
    Department of Biology, University of Virginia, Charlottesville, VA, USA
    BMC Evol Biol 10:274. 2010
  2. doi request reprint Evolutionary feedbacks between reproductive mode and mutation rate exacerbate the paradox of sex
    Daniel B Sloan
    Department of Biology, University of Virginia, Charlottesville, Virginia 22904, USA
    Evolution 64:1129-35. 2010
  3. pmc Phylogenetic analysis of mitochondrial substitution rate variation in the angiosperm tribe Sileneae
    Daniel B Sloan
    Department of Plant and Environmental Sciences, University of Gothenburg, Gothenburg, Sweden
    BMC Evol Biol 9:260. 2009
  4. ncbi request reprint Testing for selection on synonymous sites in plant mitochondrial DNA: the role of codon bias and RNA editing
    Daniel B Sloan
    Department of Biology, University of Virginia, Charlottesville, VA 22904, USA
    J Mol Evol 70:479-91. 2010
  5. pmc Extensive loss of RNA editing sites in rapidly evolving Silene mitochondrial genomes: selection vs. retroprocessing as the driving force
    Daniel B Sloan
    Department of Biology, University of Virginia, Charlottesville, Virginia 22904, USA
    Genetics 185:1369-80. 2010
  6. pmc Rapid evolution of enormous, multichromosomal genomes in flowering plant mitochondria with exceptionally high mutation rates
    Daniel B Sloan
    Department of Biology, University of Virginia, Charlottesville, Virginia, United States of America
    PLoS Biol 10:e1001241. 2012
  7. pmc Recent acceleration of plastid sequence and structural evolution coincides with extreme mitochondrial divergence in the angiosperm genus Silene
    Daniel B Sloan
    Department of Biology, University of Virginia, VA, USA
    Genome Biol Evol 4:294-306. 2012
  8. doi request reprint Intraspecific variation in mitochondrial genome sequence, structure, and gene content in Silene vulgaris, an angiosperm with pervasive cytoplasmic male sterility
    Daniel B Sloan
    Department of Biology, University of Virginia, Charlottesville, VA 22904, USA
    New Phytol 196:1228-39. 2012
  9. doi request reprint De novo transcriptome assembly and polymorphism detection in the flowering plant Silene vulgaris (Caryophyllaceae)
    Daniel B Sloan
    Department of Biology, University of Virginia, Charlottesville, VA 22903, USA
    Mol Ecol Resour 12:333-43. 2012
  10. ncbi request reprint Variation in mutation rate and polymorphism among mitochondrial genes of Silene vulgaris
    Camille M Barr
    Department of Biology, University of Virginia, VA, USA
    Mol Biol Evol 24:1783-91. 2007

Detail Information

Publications11

  1. pmc Extensive loss of translational genes in the structurally dynamic mitochondrial genome of the angiosperm Silene latifolia
    Daniel B Sloan
    Department of Biology, University of Virginia, Charlottesville, VA, USA
    BMC Evol Biol 10:274. 2010
    ..The Caryophyllaceae represents one lineage that has experienced a particularly high rate of mitochondrial gene loss relative to other angiosperms...
  2. doi request reprint Evolutionary feedbacks between reproductive mode and mutation rate exacerbate the paradox of sex
    Daniel B Sloan
    Department of Biology, University of Virginia, Charlottesville, Virginia 22904, USA
    Evolution 64:1129-35. 2010
    ....
  3. pmc Phylogenetic analysis of mitochondrial substitution rate variation in the angiosperm tribe Sileneae
    Daniel B Sloan
    Department of Plant and Environmental Sciences, University of Gothenburg, Gothenburg, Sweden
    BMC Evol Biol 9:260. 2009
    ..noctiflora is a recent and isolated evolutionary event. This assessment, however, is based on a very limited sampling of taxa within this diverse genus...
  4. ncbi request reprint Testing for selection on synonymous sites in plant mitochondrial DNA: the role of codon bias and RNA editing
    Daniel B Sloan
    Department of Biology, University of Virginia, Charlottesville, VA 22904, USA
    J Mol Evol 70:479-91. 2010
    ..Nevertheless, there are important nucleotide composition patterns (particularly the differences between synonymous sites and non-coding DNA) that remain largely unexplained...
  5. pmc Extensive loss of RNA editing sites in rapidly evolving Silene mitochondrial genomes: selection vs. retroprocessing as the driving force
    Daniel B Sloan
    Department of Biology, University of Virginia, Charlottesville, Virginia 22904, USA
    Genetics 185:1369-80. 2010
    ....
  6. pmc Rapid evolution of enormous, multichromosomal genomes in flowering plant mitochondria with exceptionally high mutation rates
    Daniel B Sloan
    Department of Biology, University of Virginia, Charlottesville, Virginia, United States of America
    PLoS Biol 10:e1001241. 2012
    ..Our results raise the hypothesis that changes in recombinational processes, including gene conversion, may be a central force driving the evolution of both mutation rate and genome structure...
  7. pmc Recent acceleration of plastid sequence and structural evolution coincides with extreme mitochondrial divergence in the angiosperm genus Silene
    Daniel B Sloan
    Department of Biology, University of Virginia, VA, USA
    Genome Biol Evol 4:294-306. 2012
    ..These results raise the possibility that common evolutionary forces could be shaping the extreme but distinct patterns of divergence in both organelle genomes within this genus...
  8. doi request reprint Intraspecific variation in mitochondrial genome sequence, structure, and gene content in Silene vulgaris, an angiosperm with pervasive cytoplasmic male sterility
    Daniel B Sloan
    Department of Biology, University of Virginia, Charlottesville, VA 22904, USA
    New Phytol 196:1228-39. 2012
    ..We conclude that S. vulgaris harbors an unusually large degree of variation in mtDNA sequence and structure and discuss the extent to which this variation might be related to CMS...
  9. doi request reprint De novo transcriptome assembly and polymorphism detection in the flowering plant Silene vulgaris (Caryophyllaceae)
    Daniel B Sloan
    Department of Biology, University of Virginia, Charlottesville, VA 22903, USA
    Mol Ecol Resour 12:333-43. 2012
    ..All of these resources are publicly available through NCBI and/or our website (http://silenegenomics.biology.virginia.edu) and should provide valuable genomic and population genetic tools for the Silene research community...
  10. ncbi request reprint Variation in mutation rate and polymorphism among mitochondrial genes of Silene vulgaris
    Camille M Barr
    Department of Biology, University of Virginia, VA, USA
    Mol Biol Evol 24:1783-91. 2007
    ....
  11. ncbi request reprint Characterization of transcriptomes from sexual and asexual lineages of a New Zealand snail (Potamopyrgus antipodarum)
    Peter R Wilton
    Department of Biology, University of Iowa, Iowa City, IA 52242, USA
    Mol Ecol Resour 13:289-94. 2013
    ..antipodarum. Raw 454 read sequences, contig sequences, annotation data and polymorphism data are publicly available in a searchable online database and for download at http://www.biology.uiowa.edu/neiman/transcriptome.php...