Peter Schattner

Summary

Affiliation: University of California
Country: USA

Publications

  1. pmc Searching for RNA genes using base-composition statistics
    Peter Schattner
    Center for Biomolecular Science and Engineering, 227 Sinsheimer Laboratories, University of California, 1156 High Street, Santa Cruz, CA 95064, USA
    Nucleic Acids Res 30:2076-82. 2002
  2. ncbi request reprint Non-coding RNAs: hope or hype?
    Alexander Huttenhofer
    Division of Genomics and RNomics, Innsbruck Medical University Biocenter, Fritz Pregl Strasse 3, 6020 Innsbruck, Austria
    Trends Genet 21:289-97. 2005
  3. pmc Genome-wide searching for pseudouridylation guide snoRNAs: analysis of the Saccharomyces cerevisiae genome
    Peter Schattner
    Department of Biomolecular Engineering, University of California, Santa Cruz, 1156 High Street, Santa Cruz, CA 95064, USA
    Nucleic Acids Res 32:4281-96. 2004
  4. pmc Automated querying of genome databases
    Peter Schattner
    Department of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, California, United States of America
    PLoS Comput Biol 3:e1. 2007
  5. pmc The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs
    Peter Schattner
    Department of Biomolecular Engineering and the UCSC RNA Center, University of California Santa Cruz, 1156 High Street, Santa Cruz, CA 95064, USA
    Nucleic Acids Res 33:W686-9. 2005
  6. pmc A computational screen for mammalian pseudouridylation guide H/ACA RNAs
    Peter Schattner
    Department of Biomolecular Engineering, UCSC RNA Center, University of California Santa Cruz, 1156 High St, Santa Cruz, Santa Cruz, CA 95064, USA
    RNA 12:15-25. 2006
  7. ncbi request reprint The principles of guiding by RNA: chimeric RNA-protein enzymes
    Alexander Huttenhofer
    Innsbruck Biocenter, Medical University Innsbruck, Fritz Pregl Strasse 3, 6020 Innsbruck, Austria
    Nat Rev Genet 7:475-82. 2006
  8. doi request reprint Genomics made easier: an introductory tutorial to genome datamining
    Peter Schattner
    Center for Biomolecular Science and Engineering, University of California, Santa Cruz, CA 95065, USA
    Genomics 93:187-95. 2009
  9. pmc The Bioperl toolkit: Perl modules for the life sciences
    Jason E Stajich
    University Program in Genetics, Duke University, Durham, North Carolina 27710, USA
    Genome Res 12:1611-8. 2002
  10. ncbi request reprint eConsulting
    Siaw Teng Liaw
    School of Rural Health, University of Melbourne, Shepparton, Victoria, Australia
    Methods Mol Med 141:353-73. 2008

Collaborators

Detail Information

Publications13

  1. pmc Searching for RNA genes using base-composition statistics
    Peter Schattner
    Center for Biomolecular Science and Engineering, 227 Sinsheimer Laboratories, University of California, 1156 High Street, Santa Cruz, CA 95064, USA
    Nucleic Acids Res 30:2076-82. 2002
    ..In addition, 19 candidate ncRNAs were identified including one with significant homology to several known archaeal RNaseP RNAs...
  2. ncbi request reprint Non-coding RNAs: hope or hype?
    Alexander Huttenhofer
    Division of Genomics and RNomics, Innsbruck Medical University Biocenter, Fritz Pregl Strasse 3, 6020 Innsbruck, Austria
    Trends Genet 21:289-97. 2005
    ....
  3. pmc Genome-wide searching for pseudouridylation guide snoRNAs: analysis of the Saccharomyces cerevisiae genome
    Peter Schattner
    Department of Biomolecular Engineering, University of California, Santa Cruz, 1156 High Street, Santa Cruz, CA 95064, USA
    Nucleic Acids Res 32:4281-96. 2004
    ..With this work, 41 of the 44 known pseudouridine modifications in S.cerevisiae rRNA have been linked with a verified snoRNA, providing the most complete accounting of the H/ACA snoRNAs that guide pseudouridylation in any species...
  4. pmc Automated querying of genome databases
    Peter Schattner
    Department of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, California, United States of America
    PLoS Comput Biol 3:e1. 2007
  5. pmc The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs
    Peter Schattner
    Department of Biomolecular Engineering and the UCSC RNA Center, University of California Santa Cruz, 1156 High Street, Santa Cruz, CA 95064, USA
    Nucleic Acids Res 33:W686-9. 2005
    ..The tRNAscan-SE, snoscan and snoGPS servers are available at http://lowelab.ucsc.edu/tRNAscan-SE/, http://lowelab.ucsc.edu/snoscan/ and http://lowelab.ucsc.edu/snoGPS/, respectively...
  6. pmc A computational screen for mammalian pseudouridylation guide H/ACA RNAs
    Peter Schattner
    Department of Biomolecular Engineering, UCSC RNA Center, University of California Santa Cruz, 1156 High St, Santa Cruz, Santa Cruz, CA 95064, USA
    RNA 12:15-25. 2006
    ..We also determined systematic syntenic conservation among human and mouse H/ACA RNAs. With this work, 82 of 97 ribosomal RNA pseudouridines and 18 of 32 spliceosomal RNA pseudouridines in mammals have been linked to H/ACA guide RNAs...
  7. ncbi request reprint The principles of guiding by RNA: chimeric RNA-protein enzymes
    Alexander Huttenhofer
    Innsbruck Biocenter, Medical University Innsbruck, Fritz Pregl Strasse 3, 6020 Innsbruck, Austria
    Nat Rev Genet 7:475-82. 2006
    ....
  8. doi request reprint Genomics made easier: an introductory tutorial to genome datamining
    Peter Schattner
    Center for Biomolecular Science and Engineering, University of California, Santa Cruz, CA 95065, USA
    Genomics 93:187-95. 2009
    ..I also show why doing so typically is more effective than using alternative methods and indicate some of the resources available for learning more about the advanced capabilities of these powerful tools...
  9. pmc The Bioperl toolkit: Perl modules for the life sciences
    Jason E Stajich
    University Program in Genetics, Duke University, Durham, North Carolina 27710, USA
    Genome Res 12:1611-8. 2002
    ..We conclude with a discussion of how the open-source nature of the project has contributed to the development effort...
  10. ncbi request reprint eConsulting
    Siaw Teng Liaw
    School of Rural Health, University of Melbourne, Shepparton, Victoria, Australia
    Methods Mol Med 141:353-73. 2008
    ....
  11. ncbi request reprint Using computer based templates for chronic disease management
    Helen Bolger-Harris
    School of Psychology, Deakin University, and Health Promotion Coordinator, Kingston Bayside Primary Care Partnership, Victoria
    Aust Fam Physician 37:285-8. 2008
    ..To develop these plans, GPs complete forms documenting goals and strategies using computer based templates...
  12. pmc Therapist-assisted, Internet-based treatment for panic disorder: can general practitioners achieve comparable patient outcomes to psychologists?
    Kerrie Shandley
    Swinburne University of Technology, Faculty of Life and Social Sciences, Mail H31, PO Box 218, Hawthorn, Victoria 3122, Australia
    J Med Internet Res 10:e14. 2008
    ..Evidence-based Internet interventions represent a potentially valuable resource to reduce the burden of care and the cost of managing mental health disorders within primary care settings and, at the same time, improve patient outcomes...
  13. ncbi request reprint Using computers to work smarter--a guide for GPs
    Peter Schattner
    Department of General Practice, School of Primary Care, Monash University, Victoria
    Aust Fam Physician 35:28-31. 2006
    ..Computers have many uses in general practice, but to get the most out of them requires commitment of time and money...