Lutgarde Raskin

Summary

Affiliation: University of Michigan
Country: USA

Publications

  1. pmc PCR biases distort bacterial and archaeal community structure in pyrosequencing datasets
    Ameet J Pinto
    Department of Civil and Environmental Engineering, University of Michigan, Ann Arbor, Michigan, United States of America
    PLoS ONE 7:e43093. 2012
  2. pmc Changes in the structure and function of microbial communities in drinking water treatment bioreactors upon addition of phosphorus
    Xu Li
    Department of Civil and Environmental Engineering, University of Michigan, Ann Arbor, MI 48109, USA
    Appl Environ Microbiol 76:7473-81. 2010
  3. doi request reprint A dynamic and complex monochloramine stress response in Escherichia coli revealed by transcriptome analysis
    Diane Holder
    Department of Environmental Health Sciences, University of Michigan, Ann Arbor, MI, USA
    Water Res 47:4978-85. 2013
  4. doi request reprint Optimization of arsenic removal water treatment system through characterization of terminal electron accepting processes
    Giridhar Upadhyaya
    Department of Civil and Environmental Engineering, University of Michigan, Ann Arbor, Michigan 48109, USA
    Environ Sci Technol 46:11702-9. 2012
  5. pmc Macrolide resistance in microorganisms at antimicrobial-free Swine farms
    Zhi Zhou
    Department of Civil and Environmental Engineering, University of Illinois at Urbana Champaign, Urbana, IL 61801, USA
    Appl Environ Microbiol 75:5814-20. 2009
  6. pmc Effects of Swine manure on macrolide, lincosamide, and streptogramin B antimicrobial resistance in soils
    Zhi Zhou
    Department of Civil and Environmental Engineering, University of Illinois at Urbana Champaign, 205 North Mathews Avenue, Urbana, Illinois 61801, USA
    Appl Environ Microbiol 76:2218-24. 2010
  7. doi request reprint Effects of the antimicrobial tylosin on the microbial community structure of an anaerobic sequencing batch reactor
    Toshio Shimada
    Department of Civil and Environmental Engineering, University of Illinois at Urbana Champaign, USA
    Biotechnol Bioeng 108:296-305. 2011
  8. doi request reprint Effect of air-assisted backwashing on the performance of an anaerobic fixed-bed bioreactor that simultaneously removes nitrate and arsenic from drinking water sources
    Giridhar Upadhyaya
    Department of Civil and Environmental Engineering, University of Michigan, Ann Arbor, MI 48109, USA
    Water Res 46:1309-17. 2012
  9. doi request reprint Psychrophilic anaerobic membrane bioreactor treatment of domestic wastewater
    Adam L Smith
    Department of Civil and Environmental Engineering, University of Michigan, 2350 Hayward Road, 107 EWRE Bldg, Ann Arbor, MI 48109, USA
    Water Res 47:1655-65. 2013
  10. doi request reprint Inhibitory effects of the macrolide antimicrobial tylosin on anaerobic treatment
    Toshio Shimada
    Department of Civil and Environmental Engineering, University of Illinois at Urbana Champaign, Urbana, Illinois, USA
    Biotechnol Bioeng 101:73-82. 2008

Collaborators

Detail Information

Publications42

  1. pmc PCR biases distort bacterial and archaeal community structure in pyrosequencing datasets
    Ameet J Pinto
    Department of Civil and Environmental Engineering, University of Michigan, Ann Arbor, Michigan, United States of America
    PLoS ONE 7:e43093. 2012
    ..However, the greatest obstacle towards accurately evaluating community structure are the errors in estimated mean relative abundance of each detected OTU due to biases associated with multi-template PCR reactions...
  2. pmc Changes in the structure and function of microbial communities in drinking water treatment bioreactors upon addition of phosphorus
    Xu Li
    Department of Civil and Environmental Engineering, University of Michigan, Ann Arbor, MI 48109, USA
    Appl Environ Microbiol 76:7473-81. 2010
    ..This information could be particularly relevant to drinking water safety, if pathogens or disinfectant-resistant bacteria are detected in the bioreactors...
  3. doi request reprint A dynamic and complex monochloramine stress response in Escherichia coli revealed by transcriptome analysis
    Diane Holder
    Department of Environmental Health Sciences, University of Michigan, Ann Arbor, MI, USA
    Water Res 47:4978-85. 2013
    ..The induction of multidrug efflux pumps and specific antibiotic resistance genes further suggests that exposure to monochloramine may contribute to reduced susceptibility to some antibiotics. ..
  4. doi request reprint Optimization of arsenic removal water treatment system through characterization of terminal electron accepting processes
    Giridhar Upadhyaya
    Department of Civil and Environmental Engineering, University of Michigan, Ann Arbor, Michigan 48109, USA
    Environ Sci Technol 46:11702-9. 2012
    ..e., dsrA) and arrA transcripts corresponded with system performance. The RT qPCR results indicated colocation of sulfate- and arsenate-reducing activities, in the presence of iron(II), suggesting their importance in arsenic removal...
  5. pmc Macrolide resistance in microorganisms at antimicrobial-free Swine farms
    Zhi Zhou
    Department of Civil and Environmental Engineering, University of Illinois at Urbana Champaign, Urbana, IL 61801, USA
    Appl Environ Microbiol 75:5814-20. 2009
    ..Taken together, these findings highlight the need for a more fundamental understanding of the relationship between antimicrobial use and the prevalence of antimicrobial resistance...
  6. pmc Effects of Swine manure on macrolide, lincosamide, and streptogramin B antimicrobial resistance in soils
    Zhi Zhou
    Department of Civil and Environmental Engineering, University of Illinois at Urbana Champaign, 205 North Mathews Avenue, Urbana, Illinois 61801, USA
    Appl Environ Microbiol 76:2218-24. 2010
    ..Overall, this study did not detect a persistent increase in the prevalence of MLS(B) resistance due to land application of treated swine manure...
  7. doi request reprint Effects of the antimicrobial tylosin on the microbial community structure of an anaerobic sequencing batch reactor
    Toshio Shimada
    Department of Civil and Environmental Engineering, University of Illinois at Urbana Champaign, USA
    Biotechnol Bioeng 108:296-305. 2011
    ....
  8. doi request reprint Effect of air-assisted backwashing on the performance of an anaerobic fixed-bed bioreactor that simultaneously removes nitrate and arsenic from drinking water sources
    Giridhar Upadhyaya
    Department of Civil and Environmental Engineering, University of Michigan, Ann Arbor, MI 48109, USA
    Water Res 46:1309-17. 2012
    ..05) and arsenic concentrations were reduced from approximately 200 μg/L to below 20 μg/L. These results indicate that AAB can be implemented in anaerobic nitrate and arsenic removal systems...
  9. doi request reprint Psychrophilic anaerobic membrane bioreactor treatment of domestic wastewater
    Adam L Smith
    Department of Civil and Environmental Engineering, University of Michigan, 2350 Hayward Road, 107 EWRE Bldg, Ann Arbor, MI 48109, USA
    Water Res 47:1655-65. 2013
    ....
  10. doi request reprint Inhibitory effects of the macrolide antimicrobial tylosin on anaerobic treatment
    Toshio Shimada
    Department of Civil and Environmental Engineering, University of Illinois at Urbana Champaign, Urbana, Illinois, USA
    Biotechnol Bioeng 101:73-82. 2008
    ..This study indicated that tylosin inhibited propionate- and butyrate-oxidizing syntrophic bacteria and fermenting bacteria resulting in unfavorable effects on methanogenesis...
  11. ncbi request reprint Evaluation of microfluidic biosensor development using microscopic analysis of molecular beacon hybridization kinetics
    Chuanwu Xi
    Department of Civil and Environmental Engineering, University of Illinois at Urbana Champaign, Beckman Institute for Advanced Science and Technology, Urbana, IL 61801, USA
    Biomed Microdevices 7:7-12. 2005
    ....
  12. ncbi request reprint Microbial diversity and dynamics in multi- and single-compartment anaerobic bioreactors processing sulfate-rich waste streams
    Aurelio M Briones
    Department of Civil and Environmental Engineering, University of Illinois at Urbana Champaign, Urbana, IL 61801, USA
    Environ Microbiol 9:93-106. 2007
    ....
  13. doi request reprint Bacterial community structure in the drinking water microbiome is governed by filtration processes
    Ameet J Pinto
    Department of Civil and Environmental Engineering, University of Michigan, USA
    Environ Sci Technol 46:8851-9. 2012
    ....
  14. ncbi request reprint Effect of backwashing on perchlorate removal in fixed bed biofilm reactors
    Young Chul Choi
    Department of Civil and Environmental Engineering, University of Illinois at Urbana Champaign, 205 N Mathews Ave, Urbana, IL 61801, USA
    Water Res 41:1949-59. 2007
    ....
  15. pmc Antimicrobial use and resistance in swine waste treatment systems
    Archana Jindal
    Department of Civil and Environmental Engineering, University of Illinois at Urbana Champaign, 3204 Newmark Civil Engineering Laboratory, MC250, 205 North Mathews Avenue, Urbana, IL 61801, USA
    Appl Environ Microbiol 72:7813-20. 2006
    ....
  16. doi request reprint Simultaneous removal of nitrate and arsenic from drinking water sources utilizing a fixed-bed bioreactor system
    Giridhar Upadhyaya
    Department of Civil and Environmental Engineering, University of Michigan, Ann Arbor, MI 48109, USA
    Water Res 44:4958-69. 2010
    ..This study showed for the first time that arsenic and nitrate can be simultaneously removed from drinking water sources utilizing a bioreactor system...
  17. ncbi request reprint Arsenic waste management: a critical review of testing and disposal of arsenic-bearing solid wastes generated during arsenic removal from drinking water
    Tara M Clancy
    Department of Civil and Environmental Engineering, University of Michigan, Ann Arbor, Michigan 48109, United States
    Environ Sci Technol 47:10799-812. 2013
    ..Future research directions are highlighted and include establishing regulatory test conditions that align with actual disposal conditions and evaluating nonlandfill disposal options for developing countries. ..
  18. pmc Quantitative rRNA-targeted solution-based hybridization assay using peptide nucleic acid molecular beacons
    Xu Li
    University of Michigan, Department of Civil and Environmental Engineering, Ann Arbor, MI 48109 2125, USA
    Appl Environ Microbiol 74:7297-305. 2008
    ..suillum RNA in this complex mixture. For another environmental sample, the quantitative results from the PNA MB hybridization assay were compared with those from clone libraries...
  19. ncbi request reprint Effect of growth conditions on inactivation of Escherichia coli with monochloramine
    David Berry
    Department of Civil and Environmental Engineering, University of Michigan, Ann Arbor, 1351 Beal Avenue, Ann Arbor, Michigan 48109 2125, USA
    Environ Sci Technol 43:884-9. 2009
    ..This work suggests that growth at suboptimal temperatures and growth in biofilms are important factors contributing to reduced susceptibility of bacteria to inactivation with monochloramine...
  20. doi request reprint Ammonia-oxidizing archaea and nitrite-oxidizing nitrospiras in the biofilter of a shrimp recirculating aquaculture system
    Monisha N Brown
    Department of Civil and Environmental Engineering, University of Michigan, Ann Arbor, MI 48109, USA
    FEMS Microbiol Ecol 83:17-25. 2013
    ..moscoviensis-type NOB. Water quality and biofilm attachment media played a role in the competitiveness of AOA over AOB and Nitrospira marina-over N. moscoviensis-type NOB...
  21. ncbi request reprint Methanogenic population dynamics and performance of an anaerobic membrane bioreactor (AnMBR) treating swine manure under high shear conditions
    Sudini I Padmasiri
    Department of Civil and Environmental Engineering, University of Illinois at Urbana Champaign, 205 N Mathews Ave, IL 61801, USA
    Water Res 41:134-44. 2007
    ....
  22. doi request reprint Chemisorption of oxygen onto activated carbon can enhance the stability of biological perchlorate reduction in fixed bed biofilm reactors
    Young Chul Choi
    Department of Civil and Environmental Engineering, University of Illinois at Urbana Champaign, 3219 Newmark Civil Engineering Laboratory, 205 North Mathews Avenue, Urbana, IL 61801, USA
    Water Res 42:3425-34. 2008
    ..Using a sorptive biofilm support medium can enhance biological perchlorate removal under dynamic loading conditions...
  23. ncbi request reprint Microbial ecology of drinking water distribution systems
    David Berry
    Department of Civil and Environmental Engineering, University of Michigan, Ann Arbor, 48109 2125, USA
    Curr Opin Biotechnol 17:297-302. 2006
    ..An understanding of the microbial ecology of distribution systems is necessary to design innovative and effective control strategies that will ensure safe and high-quality drinking water...
  24. pmc Mycobacterium avium infections of Acanthamoeba strains: host strain variability, grazing-acquired infections, and altered dynamics of inactivation with monochloramine
    David Berry
    Department of Civil and Environmental Engineering, University of Michigan, Ann Arbor, MI 48109 2125, USA
    Appl Environ Microbiol 76:6685-8. 2010
    ..Exposure of M. avium in coculture with Acanthamoeba castellanii to monochloramine yielded inactivation kinetics markedly similar to those observed for A. castellanii alone...
  25. doi request reprint Comparative transcriptomics of the response of Escherichia coli to the disinfectant monochloramine and to growth conditions inducing monochloramine resistance
    David Berry
    Department of Civil and Environmental Engineering, University of Michigan, 1351 Beal Ave, 107 EWRE Bldg, Ann Arbor, MI 48109 2125, USA
    Water Res 44:4924-31. 2010
    ..This characterization highlights the bacterial responses responsible for decreased sensitivity to monochloramine under different growth conditions...
  26. ncbi request reprint Navigating wastewater energy recovery strategies: a life cycle comparison of anaerobic membrane bioreactor and conventional treatment systems with anaerobic digestion
    Adam L Smith
    Department of Civil and Environmental Engineering, University of Michigan, 2350 Hayward Street, Ann Arbor, Michigan 48109, United States
    Environ Sci Technol 48:5972-81. 2014
    ..Rapid advancements in AnMBR technology must continue to achieve its full economic and environmental potential as an energy recovery strategy for domestic wastewater. ..
  27. pmc rRNA and poly-beta-hydroxybutyrate dynamics in bioreactors subjected to feast and famine cycles
    Dominic Frigon
    Department of Civil and Environmental Engineering, University of Michigan, 107 EWRE Bldg, 1351 Beal Ave, Ann Arbor, MI 48109 2125, USA
    Appl Environ Microbiol 72:2322-30. 2006
    ..Our results also demonstrate that the ability to accumulate PHB makes the bacteria more responsive to sudden increases in substrate concentrations, which explains their ecological advantage...
  28. pmc Automated image analysis for quantitative fluorescence in situ hybridization with environmental samples
    Zhi Zhou
    Department of Civil and Environmental Engineering, University of Illinois at Urbana Champaign, Urbana, IL 61801, USA
    Appl Environ Microbiol 73:2956-62. 2007
    ..Manual counting resulted in corresponding values of 22.4, 14.0, and 2.9%, respectively. This automated method should facilitate quantitative analysis of FISH images for a variety of complex environmental samples...
  29. pmc Separation of the bacterial species, Escherichia coli, from mixed-species microbial communities for transcriptome analysis
    Dongjuan Dai
    Department of Environmental Health Sciences, University of Michigan, Ann Arbor, MI 48109, USA
    BMC Microbiol 11:59. 2011
    ..The purpose of this study is to develop a method to separate one species, Escherichia coli as an example, from mixed-species communities for transcriptome analysis...
  30. ncbi request reprint Populations related to Alkanindiges, a novel genus containing obligate alkane degraders, are implicated in biological foaming in activated sludge systems
    Adam N Klein
    Department of Civil and Environmental Engineering, University of Illinois at Urbana Champaign, Urbana, IL 61801, USA
    Environ Microbiol 9:1898-912. 2007
    ....
  31. ncbi request reprint Perspectives on anaerobic membrane bioreactor treatment of domestic wastewater: a critical review
    Adam L Smith
    Department of Civil and Environmental Engineering, University of Michigan, 2350 Hayward Road, Ann Arbor, MI 48109, USA
    Bioresour Technol 122:149-59. 2012
    ..Furthermore, assessing the sustainability of AnMBR treatment requires establishment of a quantitative environmental and economic evaluation framework...
  32. ncbi request reprint Inactivation of Mycobacterium avium with monochloramine
    Jeanne Luh
    Department of Civil and Environmental Engineering, University of Illinois at Urbana Champaign, Urbana, Illinois 61801, USA
    Environ Sci Technol 42:8051-6. 2008
    ..avium in water could vary broadly from adequate (e.g., 99.9% inactivation efficiency in 32 min at 5 mg Cl2/L, pH 6, 30 degrees C) to impractical (e.g., 99.9% inactivation efficiency in 9 d at 1 mg Cl2/L, pH 9, 5 degrees C)...
  33. ncbi request reprint Long-term analysis of a full-scale activated sludge wastewater treatment system exhibiting seasonal biological foaming
    Dominic Frigon
    Department of Civil and Environmental Engineering, University of Illinois at Urbana Champaign, USA
    Water Res 40:990-1008. 2006
    ..When the temperature increases, the rate of lipid hydrolysis becomes sufficiently high for this population to become abundant, accumulate on the surfaces of the aeration basins, and cause biological foaming...
  34. ncbi request reprint Differential resistance of drinking water bacterial populations to monochloramine disinfection
    Tzu Hsin Chiao
    Department of Civil and Environmental Engineering, University of Michigan, Ann Arbor, Michigan 48109, United States
    Environ Sci Technol 48:4038-47. 2014
    ..These results demonstrate that bacterial populations in drinking water exhibit differential resistance to monochloramine, and that the disinfection process selects for resistant bacterial populations. ..
  35. pmc Structural and functional imaging of 3D microfluidic mixers using optical coherence tomography
    Chuanwu Xi
    Department of Civil and Environmental Engineering, Beckman Institute for Advanced Science and Technology, College of Medicine, University of Illinois at Urbana Champaign, Urbana, IL 61801, USA
    Proc Natl Acad Sci U S A 101:7516-21. 2004
    ..Mixing patterns in the vortex mixer were compared with light-microscopy and OCT image analysis. These results demonstrate that OCT can significantly improve the characterization of 3D microfluidic device structure and function...
  36. ncbi request reprint The sensitivity of fixed-bed biological perchlorate removal to changes in operating conditions and water quality characteristics
    Jess C Brown
    Department of Civil and Environmental Engineering, University of Illinois at Urbana Champaign, Urbana, IL 61801, USA
    Water Res 37:206-14. 2003
    ..5-9.0, and operating temperatures of 5-22 degrees C...
  37. doi request reprint Thorsellia anophelis is the dominant bacterium in a Kenyan population of adult Anopheles gambiae mosquitoes
    Aurelio M Briones
    Department of Civil and Environmental Engineering, University of Michigan, Ann Arbor, MI 48109 2125, USA
    ISME J 2:74-82. 2008
    ..The results suggest that aquatically derived bacteria such as T. anophelis can persist through mosquito metamorphosis and become well-established in the adult mosquito midgut...
  38. pmc Use of DNA and peptide nucleic acid molecular beacons for detection and quantification of rRNA in solution and in whole cells
    Chuanwu Xi
    Department of Civil and Environmental Engineering, University of Illinois at Urbana Champaign, Urbana, Illinois 61801, USA
    Appl Environ Microbiol 69:5673-8. 2003
    ....
  39. ncbi request reprint Microbial population dynamics during start-up and overload conditions of anaerobic digesters treating municipal solid waste and sewage sludge
    Katherine D McMahon
    Department of Civil and Environmental Engineering, University of Illinois at Urbana Champaign, 3221 Newmark Civil Engineering Laboratory, 205 North Mathews Avenue, 61801, USA
    Biotechnol Bioeng 87:823-34. 2004
    ..It is hypothesized that higher levels of SPOB and SFAS and their methanogenic partners in previously unstable digesters are responsible for this behavior...
  40. ncbi request reprint Diversity and dynamics of microbial communities in engineered environments and their implications for process stability
    Aurelio Briones
    Department of Civil and Environmental Engineering, University of Illinois at Urbana Champaign, 205 North Mathews Avenue, Urbana, IL 61801, USA
    Curr Opin Biotechnol 14:270-6. 2003
    ....
  41. ncbi request reprint Presence of macrolide-lincosamide-streptogramin B and tetracycline antimicrobials in swine waste treatment processes and amended soil
    Julie Zilles
    Department of Civil and Environmental Engineering, University of Illinois, Urbana Champaign, USA
    Water Environ Res 77:57-62. 2005
    ..Oxytetracycline and lincomycin were also detected in soil from a field amended with waste treatment byproducts...
  42. ncbi request reprint Methanogenic population dynamics during startup of a full-scale anaerobic sequencing batch reactor treating swine waste
    Largus T Angenent
    Department of Civil and Environmental Engineering, University of Illinois at Urbana Champaign, Urbana 61801, USA
    Water Res 36:4648-54. 2002
    ..Anaerobic digestion at total ammonia-N levels exceeding 3500mg l(-1) was sustainable apparently due to the acclimation of hydrogen-utilizing methanogens to high ammonia levels...