Srikrishna Putta

Summary

Affiliation: University of Kentucky
Country: USA

Publications

  1. ncbi From biomedicine to natural history research: EST resources for ambystomatid salamanders
    Srikrishna Putta
    Department of Biology, University of Kentucky, Lexington, KY 40506, USA
    BMC Genomics 5:54. 2004
  2. ncbi Microarray and cDNA sequence analysis of transcription during nerve-dependent limb regeneration
    James R Monaghan
    Department of Biology and Spinal Cord and Brain Injury Research Center, University of Kentucky, Lexington, KY 40506, USA
    BMC Biol 7:1. 2009
  3. ncbi Sal-Site: integrating new and existing ambystomatid salamander research and informational resources
    Jeramiah J Smith
    Department of Biology, Spinal Cord and Brain Injury Research Center, University of Kentucky, Lexington, KY 40506, USA
    BMC Genomics 6:181. 2005
  4. ncbi Effect of thyroid hormone concentration on the transcriptional response underlying induced metamorphosis in the Mexican axolotl (Ambystoma)
    Robert B Page
    Department of Biology, University of Kentucky, Lexington, Kentucky 40506 USA
    BMC Genomics 9:78. 2008
  5. ncbi Genic regions of a large salamander genome contain long introns and novel genes
    Jeramiah J Smith
    Department of Biology and Spinal Cord and Brain Injury Research Center, University of Kentucky, Lexington, KY 40506, USA
    BMC Genomics 10:19. 2009
  6. ncbi Microarray analysis of a salamander hopeful monster reveals transcriptional signatures of paedomorphic brain development
    Robert B Page
    Department of Biology and Spinal Cord and Brain Injury Research Center, University of Kentucky, Lexington, KY 40506, USA
    BMC Evol Biol 10:199. 2010
  7. ncbi Origin of amphibian and avian chromosomes by fission, fusion, and retention of ancestral chromosomes
    Stephen R Voss
    Department of Biology and Spinal Cord and Brain Injury Research Center, University of Kentucky, Lexington, Kentucky 40506, USA
    Genome Res 21:1306-12. 2011
  8. ncbi Transcriptional and phylogenetic analysis of five complete ambystomatid salamander mitochondrial genomes
    Amy K Samuels
    University of Kentucky, Department of Biology, Lexington, KY 40506, USA
    Gene 349:43-53. 2005
  9. ncbi Early gene expression during natural spinal cord regeneration in the salamander Ambystoma mexicanum
    James R Monaghan
    Department of Biology and Spinal Cord and Brain Injury Research Center, University of Kentucky, Lexington, Kentucky, USA
    J Neurochem 101:27-40. 2007
  10. ncbi MapToGenome: A Comparative Genomic Tool that Aligns Transcript Maps to Sequenced Genomes
    Srikrishna Putta
    Department of Biology, University of Kentucky, Lexington, KY
    Evol Bioinform Online 3:15-25. 2007

Collaborators

Detail Information

Publications10

  1. ncbi From biomedicine to natural history research: EST resources for ambystomatid salamanders
    Srikrishna Putta
    Department of Biology, University of Kentucky, Lexington, KY 40506, USA
    BMC Genomics 5:54. 2004
    ..We developed ESTs for Mexican axolotl (Ambystoma mexicanum) and Eastern tiger salamander (A. tigrinum tigrinum), species with deep and diverse research histories...
  2. ncbi Microarray and cDNA sequence analysis of transcription during nerve-dependent limb regeneration
    James R Monaghan
    Department of Biology and Spinal Cord and Brain Injury Research Center, University of Kentucky, Lexington, KY 40506, USA
    BMC Biol 7:1. 2009
    ..Innervated (NR) and denervated (DL) forelimbs of Mexican axolotls were amputated and transcripts were sampled after 0, 5, and 14 days of regeneration...
  3. ncbi Sal-Site: integrating new and existing ambystomatid salamander research and informational resources
    Jeramiah J Smith
    Department of Biology, Spinal Cord and Brain Injury Research Center, University of Kentucky, Lexington, KY 40506, USA
    BMC Genomics 6:181. 2005
    ..Sal-Site is accessible at http://www.ambystoma.org...
  4. ncbi Effect of thyroid hormone concentration on the transcriptional response underlying induced metamorphosis in the Mexican axolotl (Ambystoma)
    Robert B Page
    Department of Biology, University of Kentucky, Lexington, Kentucky 40506 USA
    BMC Genomics 9:78. 2008
    ..We induced metamorphosis in juvenile Mexican axolotls (Ambystoma mexicanum) using 5 and 50 nM T4, collected epidermal tissue from the head at four time points (Days 0, 2, 12, 28), and used microarray analysis to quantify mRNA abundances...
  5. ncbi Genic regions of a large salamander genome contain long introns and novel genes
    Jeramiah J Smith
    Department of Biology and Spinal Cord and Brain Injury Research Center, University of Kentucky, Lexington, KY 40506, USA
    BMC Genomics 10:19. 2009
    ..Sixteen BAC clones from the Mexican axolotl (Ambystoma mexicanum: c-value = 32 x 10(9) bp) were isolated and sequenced to characterize the structure of genic regions...
  6. ncbi Microarray analysis of a salamander hopeful monster reveals transcriptional signatures of paedomorphic brain development
    Robert B Page
    Department of Biology and Spinal Cord and Brain Injury Research Center, University of Kentucky, Lexington, KY 40506, USA
    BMC Evol Biol 10:199. 2010
    ..The basis of paedomorphic development was investigated by comparing temporal patterns of gene transcription between axolotl and tiger salamander larvae (Ambystoma tigrinum tigrinum) that typically undergo a metamorphosis...
  7. ncbi Origin of amphibian and avian chromosomes by fission, fusion, and retention of ancestral chromosomes
    Stephen R Voss
    Department of Biology and Spinal Cord and Brain Injury Research Center, University of Kentucky, Lexington, Kentucky 40506, USA
    Genome Res 21:1306-12. 2011
    ..Overall, the results demonstrate the value of data from diverse, amphibian genomes in studies of vertebrate genome evolution...
  8. ncbi Transcriptional and phylogenetic analysis of five complete ambystomatid salamander mitochondrial genomes
    Amy K Samuels
    University of Kentucky, Department of Biology, Lexington, KY 40506, USA
    Gene 349:43-53. 2005
    ..Our results show the benefit of using complete genome mitochondrial information in studies of recently and rapidly diverged taxa...
  9. ncbi Early gene expression during natural spinal cord regeneration in the salamander Ambystoma mexicanum
    James R Monaghan
    Department of Biology and Spinal Cord and Brain Injury Research Center, University of Kentucky, Lexington, Kentucky, USA
    J Neurochem 101:27-40. 2007
    ..Our study illustrates the utility of a salamander model for identifying genes and gene functions that may enhance regenerative ability in mammals...
  10. ncbi MapToGenome: A Comparative Genomic Tool that Aligns Transcript Maps to Sequenced Genomes
    Srikrishna Putta
    Department of Biology, University of Kentucky, Lexington, KY
    Evol Bioinform Online 3:15-25. 2007
    ..Comparisons between vertebrate maps and genomes reveal broad patterns of conservation among vertebrate genomes and the differential effects of genome rearrangement over time and across lineages...