John H Paul

Summary

Affiliation: University of South Florida
Country: USA

Publications

  1. ncbi request reprint Marine phage genomics: what have we learned?
    John H Paul
    College of Marine Science, University of South Florida, St Petersburg, Florida 33701, USA
    Curr Opin Biotechnol 16:299-307. 2005
  2. pmc Metagenomic analysis of lysogeny in Tampa Bay: implications for prophage gene expression
    Lauren McDaniel
    University of South Florida, College of Marine Science, St Petersburg, Florida, USA
    PLoS ONE 3:e3263. 2008
  3. pmc Environmental factors influencing gene transfer agent (GTA) mediated transduction in the subtropical ocean
    Lauren D McDaniel
    College of Marine Science, University of South Florida, St Petersburg, Florida, United States of America
    PLoS ONE 7:e43506. 2012
  4. pmc The temperate marine phage PhiHAP-1 of Halomonas aquamarina possesses a linear plasmid-like prophage genome
    Jennifer M Mobberley
    University of South Florida, College of Marine Science, 140 7th Avenue South, Saint Petersburg, FL 33701, USA
    J Virol 82:6618-30. 2008
  5. doi request reprint Prophages in marine bacteria: dangerous molecular time bombs or the key to survival in the seas?
    John H Paul
    College of Marine Science, University of South Florida, St Petersburg, FL 33701, USA
    ISME J 2:579-89. 2008
  6. doi request reprint High frequency of horizontal gene transfer in the oceans
    Lauren D McDaniel
    University of South Florida College of Marine Science, St Petersburg, FL 33701, USA
    Science 330:50. 2010
  7. ncbi request reprint Phytoplankton carbon fixation gene (RuBisCO) transcripts and air-sea CO(2) flux in the Mississippi River plume
    David E John
    College of Marine Science, University of South Florida, 140 7th Ave S, St Petersburg, FL 33701, USA
    ISME J 1:517-31. 2007
  8. ncbi request reprint Comparison of lysogeny (prophage induction) in heterotrophic bacterial and Synechococcus populations in the Gulf of Mexico and Mississippi River plume
    Amy Long
    Fish and Wildlife Research Institute, Florida Fish and Wildlife Conservation Commission, St Petersburg, FL 33701, USA
    ISME J 2:132-44. 2008
  9. ncbi request reprint Marine phage genomics
    John H Paul
    College of Marine Sciences, University of South Florida, 140 Seventh Ave S, St Petersburg, FL 33701, USA
    Comp Biochem Physiol B Biochem Mol Biol 133:463-76. 2002
  10. ncbi request reprint Phytoplankton-group specific quantitative polymerase chain reaction assays for RuBisCO mRNA transcripts in seawater
    David E John
    College of Marine Science, University of South Florida, Saint Petersburg, FL 33701, USA
    Mar Biotechnol (NY) 9:747-59. 2007

Detail Information

Publications21

  1. ncbi request reprint Marine phage genomics: what have we learned?
    John H Paul
    College of Marine Science, University of South Florida, St Petersburg, Florida 33701, USA
    Curr Opin Biotechnol 16:299-307. 2005
    ..Future studies are likely to focus on sequencing more marine phage genomes from disparate hosts and diverse environments and on further basic studies of the biology of existing marine phages...
  2. pmc Metagenomic analysis of lysogeny in Tampa Bay: implications for prophage gene expression
    Lauren McDaniel
    University of South Florida, College of Marine Science, St Petersburg, Florida, USA
    PLoS ONE 3:e3263. 2008
    ..These results underscore the value of metagenomic data in discovering signature genes that play important roles in the environment through their expression, as demonstrated by integrases in lysogeny...
  3. pmc Environmental factors influencing gene transfer agent (GTA) mediated transduction in the subtropical ocean
    Lauren D McDaniel
    College of Marine Science, University of South Florida, St Petersburg, Florida, United States of America
    PLoS ONE 7:e43506. 2012
    ..These results indicate that GTA-mediated HGT in the marine environment with the strains examined is favored during times of elevated bacterial and GTA abundance as well as in areas of higher salinity...
  4. pmc The temperate marine phage PhiHAP-1 of Halomonas aquamarina possesses a linear plasmid-like prophage genome
    Jennifer M Mobberley
    University of South Florida, College of Marine Science, 140 7th Avenue South, Saint Petersburg, FL 33701, USA
    J Virol 82:6618-30. 2008
    ..The PhiHAP-1 genome shares synteny and gene similarity with coliphage N15 and vibriophages VP882 and VHML, suggesting an evolutionary heritage from an N15-like linear plasmid prophage ancestor...
  5. doi request reprint Prophages in marine bacteria: dangerous molecular time bombs or the key to survival in the seas?
    John H Paul
    College of Marine Science, University of South Florida, St Petersburg, FL 33701, USA
    ISME J 2:579-89. 2008
    ..Finally, the widespread occurrence of GTAs may be an efficient mechanism for horizontal gene transfer in the oceans...
  6. doi request reprint High frequency of horizontal gene transfer in the oceans
    Lauren D McDaniel
    University of South Florida College of Marine Science, St Petersburg, FL 33701, USA
    Science 330:50. 2010
    ..These findings suggest a plausible mechanism by which marine bacteria acquire novel traits, thus ensuring resilience in the face of environmental change...
  7. ncbi request reprint Phytoplankton carbon fixation gene (RuBisCO) transcripts and air-sea CO(2) flux in the Mississippi River plume
    David E John
    College of Marine Science, University of South Florida, 140 7th Ave S, St Petersburg, FL 33701, USA
    ISME J 1:517-31. 2007
    ..Our work represents the first attempt to relate in situ microbial gene expression to contemporaneous CO(2) flux measurements in the ocean...
  8. ncbi request reprint Comparison of lysogeny (prophage induction) in heterotrophic bacterial and Synechococcus populations in the Gulf of Mexico and Mississippi River plume
    Amy Long
    Fish and Wildlife Research Institute, Florida Fish and Wildlife Conservation Commission, St Petersburg, FL 33701, USA
    ISME J 2:132-44. 2008
    ..This indicated that heterotrophic bacterial populations were well adapted to the river plume environments, thus providing a possible explanation for differences in prevalence of lysogeny observed between the two populations...
  9. ncbi request reprint Marine phage genomics
    John H Paul
    College of Marine Sciences, University of South Florida, 140 Seventh Ave S, St Petersburg, FL 33701, USA
    Comp Biochem Physiol B Biochem Mol Biol 133:463-76. 2002
    ..Finally, deciphering phage genomes is providing clues about the adaptive response of phages and their hosts to environmental cues...
  10. ncbi request reprint Phytoplankton-group specific quantitative polymerase chain reaction assays for RuBisCO mRNA transcripts in seawater
    David E John
    College of Marine Science, University of South Florida, Saint Petersburg, FL 33701, USA
    Mar Biotechnol (NY) 9:747-59. 2007
    ..Diatoms and other heterokonts were shown to be the primary carbon fixers at these locations by PCR, in agreement with greater form ID rbcL RNA measured by hybridization...
  11. ncbi request reprint Development and evaluation of a method to detect and quantify enteroviruses using NASBA and internal control RNA (IC-NASBA)
    Erica T Casper
    College of Marine Science, University of South Florida, 140 7th Ave S, St Petersburg, FL 33701, USA
    J Virol Methods 124:149-55. 2005
    ..Rapid and sensitive detection of enteroviruses is important in both clinical samples to diagnose illness and in environmental samples to assess risk of wastewater contamination and potential health hazards...
  12. pmc The genome of deep-sea vent chemolithoautotroph Thiomicrospira crunogena XCL-2
    Kathleen M Scott
    Biology Department, University of South Florida, Tampa, Florida, United States of America
    PLoS Biol 4:e383. 2006
    ..The genome has characteristics consistent with an obligately chemolithoautotrophic lifestyle, including few transporters predicted to have organic allocrits, and Calvin-Benson-Bassham cycle CDSs scattered throughout the genome...
  13. pmc Quantification of human polyomaviruses JC Virus and BK Virus by TaqMan quantitative PCR and comparison to other water quality indicators in water and fecal samples
    Shannon M McQuaig
    Department of Biology, University of South Florida, Tampa, 33620, USA
    Appl Environ Microbiol 75:3379-88. 2009
    ....
  14. ncbi request reprint Increased precision of microbial RNA quantification using NASBA with an internal control
    Stacey S Patterson
    College of Marine Science, University of South Florida, 140 7th Ave, South, St Petersburg, FL 33701, USA
    J Microbiol Methods 60:343-52. 2005
    ..By utilizing this simple method, we have significantly increased our accuracy and precision of prediction over the standard TTP calculations...
  15. pmc Complete genome sequence of phiHSIC, a pseudotemperate marine phage of Listonella pelagia
    John H Paul
    College of Marine Science, University of South Florida, 140 7th Ave South, St Petersburg, Florida 33701
    Appl Environ Microbiol 71:3311-20. 2005
    ..These results further emphasize the need to sequence phages from the marine environment, perhaps the largest reservoir of untapped genetic information...
  16. doi request reprint Toxicity and mutagenicity of gulf of Mexico waters during and after the deepwater horizon oil spill
    John H Paul
    College of Marine Science, University of South Florida, 140 Seventh Avenue South, St Petersburg, Florida 33701, United States
    Environ Sci Technol 47:9651-9. 2013
    ..Organisms in contact with these waters might experience DNA damage that could lead to mutation and heritable alterations to the community pangenome. Such mutagenic interactions might not become apparent in higher organisms for years. ..
  17. pmc Detection and quantification of the red tide dinoflagellate Karenia brevis by real-time nucleic acid sequence-based amplification
    Erica T Casper
    College of Marine Science, University of South Florida, St Petersburg, FL 33701, USA
    Appl Environ Microbiol 70:4727-32. 2004
    ..Those samples that did not match were off by only one class. NASBA is sensitive, rapid, and effective and may be used as an additional or alternative method to detect and quantify K. brevis in the marine environment...
  18. pmc Pathogenic human viruses in coastal waters
    Dale W Griffin
    Center for Coastal and Regional Marine Studies, U S Geological Survey College of Marine Sciences, University of South Florida, St Petersburg, Florida 33701, USA
    Clin Microbiol Rev 16:129-43. 2003
    ..The application of new and advanced molecular methods will continue to contribute to our current state of knowledge in this emerging and important field...
  19. pmc Geochemical rate-RNA integration study: ribulose-1,5-bisphosphate carboxylase/oxygenase gene transcription and photosynthetic capacity of planktonic photoautotrophs
    Jorge E Corredor
    Department of Marine Sciences, University of Puerto Rico, Lajas, Puerto Rico
    Appl Environ Microbiol 70:5459-68. 2004
    ..These results suggest that diatoms were a major contributor to carbon fixation at LEO 15 at the time of sampling and that photosynthetic carbon fixation was partially controlled by transcriptional regulation of the RubisCO gene...
  20. ncbi request reprint Development and applications of microbial ecogenomic indicators for monitoring water quality: report of a workshop assessing the state of the science, research needs and future directions
    Richard Devereux
    U S Environmental Protection Agency, National Health and Environmental Effects Research Laboratory, Gulf Ecology Division, 1 Sabine Island Dr, Gulf Breeze, FL 32561, USA
    Environ Monit Assess 116:459-79. 2006
    ....
  21. doi request reprint Global-scale processes with a nanoscale drive: the role of marine viruses
    Corina P D Brussaard
    Department of Biological Oceanography, Royal Netherlands Institute for Sea Research NIOZ, Texel, The Netherlands
    ISME J 2:575-8. 2008