Nipam H Patel

Summary

Affiliation: University of Chicago
Country: USA

Publications

  1. pmc Developmental biologists cast a net over sequenced genomes
    Matthias Gerberding
    Howard Hughes Medical Institute, University of Chicago, 5841 S, Maryland Ave, MC1028, Chicago, IL 60637, USA
    Genome Biol 3:REPORTS4032. 2002
  2. ncbi Grasshopper hunchback expression reveals conserved and novel aspects of axis formation and segmentation
    N H Patel
    Department of Organismal Biology and Anatomy and Howard Hughes Medical Institute, University of Chicago, 5841 S Maryland Ave, MC1028, Chicago, IL 60637, USA
    Development 128:3459-72. 2001
  3. pmc Beyond the Hox complex
    N H Patel
    Department of Organismal Biology and Anatomy, University of Chicago, Chicago, IL 60637, USA and Howard Hughes Medical Institute
    Genome Biol 1:REVIEWS1027. 2000
  4. pmc It's a bug's life
    N H Patel
    Howard Hughes Medical Institute, University of Chicago, 5841 South Maryland Avenue MC1028, Chicago, IL 60637, USA
    Proc Natl Acad Sci U S A 97:4442-4. 2000
  5. ncbi Pax group III genes and the evolution of insect pair-rule patterning
    G K Davis
    Committee on Developmental Biology, University of Chicago, Chicago, IL 60637, USA
    Development 128:3445-58. 2001
  6. ncbi Pax3/7 genes reveal conservation and divergence in the arthropod segmentation hierarchy
    Gregory K Davis
    Committee on Developmental Biology, University of Chicago, Chicago, IL 60637, USA
    Dev Biol 285:169-84. 2005
  7. pmc giant is a bona fide gap gene in the intermediate germband insect, Oncopeltus fasciatus
    Paul Z Liu
    Howard Hughes Medical Institute, Department of Molecular and Cell Biology, and Department of Integrative Biology, University of California, Berkeley, CA 94702, USA
    Development 137:835-44. 2010
  8. ncbi Analysis of the expression pattern of Mysidium columbiae wingless provides evidence for conserved mesodermal and retinal patterning processes among insects and crustaceans
    Molly Duman-Scheel
    Deparment of Molecular Genetics and Cell Biology, University of Chicago, 920 E 58th Street, Chicago, IL 60637, USA
    Dev Genes Evol 212:114-23. 2002
  9. ncbi Analysis of molecular marker expression reveals neuronal homology in distantly related arthropods
    M Duman-Scheel
    Department of Molecular Genetics and Cell Biology, University of Chicago, Chicago, IL 60637, USA
    Development 126:2327-34. 1999
  10. ncbi The ancestry of segmentation
    Nipam H Patel
    Department of Integrative Biology, Howard Hughes Medical Institute, University of California, Berkeley, Berkeley, CA 94720, USA
    Dev Cell 5:2-4. 2003

Collaborators

Detail Information

Publications38

  1. pmc Developmental biologists cast a net over sequenced genomes
    Matthias Gerberding
    Howard Hughes Medical Institute, University of Chicago, 5841 S, Maryland Ave, MC1028, Chicago, IL 60637, USA
    Genome Biol 3:REPORTS4032. 2002
    ..A report on the annual meeting of the Society of Developmental Biology, Madison, Wisconsin, USA, 21-24 July 2002...
  2. ncbi Grasshopper hunchback expression reveals conserved and novel aspects of axis formation and segmentation
    N H Patel
    Department of Organismal Biology and Anatomy and Howard Hughes Medical Institute, University of Chicago, 5841 S Maryland Ave, MC1028, Chicago, IL 60637, USA
    Development 128:3459-72. 2001
    ....
  3. pmc Beyond the Hox complex
    N H Patel
    Department of Organismal Biology and Anatomy, University of Chicago, Chicago, IL 60637, USA and Howard Hughes Medical Institute
    Genome Biol 1:REVIEWS1027. 2000
    ..Recent findings suggest the Hox complex may be just part of a larger chromosomal assemblage of homeobox-containing genes that existed in the ancestor to all vertebrates...
  4. pmc It's a bug's life
    N H Patel
    Howard Hughes Medical Institute, University of Chicago, 5841 South Maryland Avenue MC1028, Chicago, IL 60637, USA
    Proc Natl Acad Sci U S A 97:4442-4. 2000
    ....
  5. ncbi Pax group III genes and the evolution of insect pair-rule patterning
    G K Davis
    Committee on Developmental Biology, University of Chicago, Chicago, IL 60637, USA
    Development 128:3445-58. 2001
    ..This early expression of pairberry1 is reminiscent of Drosophila paired and represents the first evidence for pair-rule patterning in short germ grasshoppers or any hemimetabolous insect...
  6. ncbi Pax3/7 genes reveal conservation and divergence in the arthropod segmentation hierarchy
    Gregory K Davis
    Committee on Developmental Biology, University of Chicago, Chicago, IL 60637, USA
    Dev Biol 285:169-84. 2005
    ....
  7. pmc giant is a bona fide gap gene in the intermediate germband insect, Oncopeltus fasciatus
    Paul Z Liu
    Howard Hughes Medical Institute, Department of Molecular and Cell Biology, and Department of Integrative Biology, University of California, Berkeley, CA 94702, USA
    Development 137:835-44. 2010
    ..This highlights the conservation of anterior patterning and evolutionary plasticity of the genetic regulation controlling posterior segmentation, even in short and intermediate germ insects...
  8. ncbi Analysis of the expression pattern of Mysidium columbiae wingless provides evidence for conserved mesodermal and retinal patterning processes among insects and crustaceans
    Molly Duman-Scheel
    Deparment of Molecular Genetics and Cell Biology, University of Chicago, 920 E 58th Street, Chicago, IL 60637, USA
    Dev Genes Evol 212:114-23. 2002
    ..Analysis of mcowgexpression provides molecular evidence suggesting that the processes of heart, muscle, and eye patterning are likely to be conserved among insects and crustaceans...
  9. ncbi Analysis of molecular marker expression reveals neuronal homology in distantly related arthropods
    M Duman-Scheel
    Department of Molecular Genetics and Cell Biology, University of Chicago, Chicago, IL 60637, USA
    Development 126:2327-34. 1999
    ..We conclude that despite their distant phylogenetic relationships and divergent mechanisms of neurogenesis, insects, malacostracans, branchiopods and collembolans share many common CNS components...
  10. ncbi The ancestry of segmentation
    Nipam H Patel
    Department of Integrative Biology, Howard Hughes Medical Institute, University of California, Berkeley, Berkeley, CA 94720, USA
    Dev Cell 5:2-4. 2003
    ....
  11. pmc Dynamics of Drosophila embryonic patterning network perturbed in space and time using microfluidics
    Elena M Lucchetta
    Department of Chemistry, University of Chicago, Chicago, Illinois 60637, USA
    Nature 434:1134-8. 2005
    ..The microfluidic technology used here may prove useful to future studies, as it allows spatial and temporal regulation of embryonic development...
  12. ncbi Nanos plays a conserved role in axial patterning outside of the Diptera
    Sabbi Lall
    HHMI Department of Organismal Biology and Anatomy, University of Chicago, 5841 South Maryland Avenue MC1028, Chicago, IL 60637, USA
    Curr Biol 13:224-9. 2003
    ..This is consistent with the notion that an anterior gradient system is not necessary in all insects and that the posterior pole "probably conveys longitudinal polarity on the ensuing germ anlage"...
  13. ncbi Evolution of the interaction between Hox genes and a downstream target
    M F Palopoli
    Howard Hughes Medical Institute, University of Chicago, Illinois 60637, USA
    Curr Biol 8:587-90. 1998
    ..We suggest that the regulatory interaction between the BX-C genes and Dll has evolved within the hexapods in a complex, segment-specific manner...
  14. ncbi Genetic separation of the neural and cuticular patterning functions of gooseberry
    M Duman-Scheel
    Department of Molecular Genetics and Cell Biology, University of Chicago, Illinois 60637, USA
    Development 124:2855-65. 1997
    ..In contrast to epidermal patterning, where Gsb is required to maintain wg transcription, we find that Gsb antagonizes the Wg signal that confers neuroblast (NB) 4-2 fate...
  15. ncbi Stages of embryonic development in the amphipod crustacean, Parhyale hawaiensis
    William E Browne
    University of Chicago, Department of Molecular Genetics and Cell Biology, Committee on Developmental Biology, Chicago, IL, USA
    Genesis 42:124-49. 2005
    ..In addition, several aspects of Parhyale embryonic development make this species particularly suitable for a broad range of experimental manipulations...
  16. ncbi Sequence and expression of grasshopper antennapedia: comparison to Drosophila
    D C Hayward
    Howard Hughes Medical Institute, Department of Molecular and Cell Biology, University of California, Berkeley 94720, USA
    Dev Biol 172:452-65. 1995
    ..In the CNS expression is initially limited to a few neurons, but eventually becomes widespread. Both insects show strong expression in certain homologous identified neurons and similar temporal modulation of expression...
  17. ncbi Patterning of the branched head appendages in Schistocerca americana and Tribolium castaneum
    Matt W Giorgianni
    Committee on Developmental Biology, University of Chicago, Chicago, IL 60637, USA
    Evol Dev 6:402-10. 2004
    ..We find that the branches of the gnathal appendages are not specified through the redeployment of the Wg-Dpp system for distal outgrowth, but our comparative studies do suggest a role for Dpp in forming furrows between tissues...
  18. ncbi Investigating divergent mechanisms of mesoderm development in arthropods: the expression of Ph-twist and Ph-mef2 in Parhyale hawaiensis
    Alivia L Price
    Department of Molecular Genetics and Cell Biology, Committee on Developmental Biology, University of Chicago, Chicago, Illinois 60637, USA
    J Exp Zool B Mol Dev Evol 310:24-40. 2008
    ....
  19. ncbi Neural cell fate in rca1 and cycA mutants: the roles of intrinsic and extrinsic factors in asymmetric division in the Drosophila central nervous system
    B C Lear
    Department of Molecular Genetics and Cell Biology, University of Chicago, IL 60637, USA
    Mech Dev 88:207-19. 1999
    ..While the extrinsic factors Notch and Delta are also required to attain both fates, our results indicate that Delta signal can be received from outside the sibling pair...
  20. ncbi Cell lineage analysis of the amphipod crustacean Parhyale hawaiensis reveals an early restriction of cell fates
    Matthias Gerberding
    Department of Organismal Biology and Anatomy, University of Chicago, Chicago, IL 60637, USA
    Development 129:5789-801. 2002
    ..Finally, the techniques we have developed for the analysis of Parhyale development suggest that this arthropod may be particularly useful for future functional analyses of crustacean development...
  21. ncbi Molecular genetics of crustacean feeding appendage development and diversification
    W E Browne
    University of Chicago, 5841 S Maryland Ave, Chicago, IL 60637, USA
    Semin Cell Dev Biol 11:427-35. 2000
    ..Here we review some of these data based on the expression patterns of the genes Ultrabithorax, abdominal - A, Sex combs reduced, and Distal-less...
  22. ncbi The origin and evolution of segmentation
    G K Davis
    Committee on Developmental Biology, University of Chicago, Chicago, IL 60637, USA
    Trends Cell Biol 9:M68-72. 1999
    ..This article reviews what is known about the segmentation process and considers various proposals to explain its evolution...
  23. ncbi Neo-Darwinian developmental evolution: can we bridge the gap between pattern and process?
    M F Palopoli
    Howard Hughes Medical Institute, MC1028, AMB N 101, 5841 South Maryland Avenue, Chicago, Illinois 60637, USA
    Curr Opin Genet Dev 6:502-8. 1996
    ..On the other hand, there is growing support for the view that adaptations often involve large-effect genes; fortunately, the candidate gene approach is well suited to this type of genetic architecture...
  24. ncbi Evidence for stabilizing selection in a eukaryotic enhancer element
    M Z Ludwig
    Department of Ecology and Evolution, University of Chicago, Illinois 60637, USA
    Nature 403:564-7. 2000
    ..Sequence differences between species have functional consequences, therefore, but they are masked by other co-evolved differences. On the basis of these results, we present a model for the evolution of eukaryotic regulatory sequences...
  25. ncbi Functional analysis of eve stripe 2 enhancer evolution in Drosophila: rules governing conservation and change
    M Z Ludwig
    Department of Ecology and Evolution, University of Chicago, Chicago, IL 60637, USA
    Development 125:949-58. 1998
    ..This view allows for a slow but continual turnover of functionally important changes in the stripe 2 enhancer...
  26. ncbi Comparative methods for the analysis of gene-expression evolution: an example using yeast functional genomic data
    Todd H Oakley
    Ecology and Evolution, University of Chicago, USA
    Mol Biol Evol 22:40-50. 2005
    ..The comparative methods presented here are general enough to test a wide range of evolutionary hypotheses using genomic-scale data from any organism...
  27. ncbi Conservation and divergence in molecular mechanisms of axis formation
    S Lall
    Howard Hughes Medical Institute, University of Chicago, Chicago, Illinois 60637, USA
    Annu Rev Genet 35:407-37. 2001
    ..In this review we examine the postfertilization mechanisms underlying axis specification in Drosophila. Comparative data are then used to ask whether aspects of axis formation might be derived or ancestral...
  28. ncbi Short, long, and beyond: molecular and embryological approaches to insect segmentation
    Gregory K Davis
    Committee on Developmental Biology, University of Chicago, Chicago Illinois 60637, USA
    Annu Rev Entomol 47:669-99. 2002
    ..These results are discussed in embryological context with an eye toward understanding the evolution of segmentation within insects...
  29. ncbi Patterns on the insect wing
    Ronald J Parchem
    Department of Molecular and Cell Biology, University of California, Berkeley 94720 3140, USA
    Curr Opin Genet Dev 17:300-8. 2007
    ..Collectively, our understanding of formation and evolution of color pattern in insect wings is rapidly advancing because of these recent breakthroughs in several different fields...
  30. ncbi Evolutionary biology: time, space and genomes
    Nipam H Patel
    Nature 431:28-9. 2004
  31. ncbi Playing by pair-rules?
    Gregory K Davis
    Department of Ecology and Evolutionary Biology, Princeton University, USA
    Bioessays 25:425-9. 2003
    ..Recent data of Dearden et al.1 and Henry et al.,2 however, hint that a pair-rule mechanism might play a role in the segmentation process of basal arthropods and vertebrates...
  32. pmc The repressor activity of Even-skipped is highly conserved, and is sufficient to activate engrailed and to regulate both the spacing and stability of parasegment boundaries
    Miki Fujioka
    Department of Microbiology and Immunology, Thomas Jefferson University, JAH490, Philadelphia, PA 19107, USA
    Development 129:4411-21. 2002
    ....
  33. ncbi Precision patterning
    Nipam H Patel
    Nature 415:748-9. 2002
  34. pmc Gene duplication and speciation in Drosophila: evidence from the Odysseus locus
    Chau Ti Ting
    Department of Life Science, National Tsing Hua University, Hsinchu 300, Taiwan
    Proc Natl Acad Sci U S A 101:12232-5. 2004
    ....
  35. ncbi Genomes and evolution. From sequence to organism
    Evan E Eichler
    Curr Opin Genet Dev 13:559-61. 2003
  36. pmc Even-skipped, acting as a repressor, regulates axonal projections in Drosophila
    Miki Fujioka
    Department of Microbiology and Immunology, Thomas Jefferson University, 1020 Locust Street, Philadelphia, PA 19107, USA
    Development 130:5385-400. 2003
    ..Finally, homologues of Eve from diverse species were able to rescue the eve mutant phenotype, indicating conservation of both targeting and repression functions in the nervous system...
  37. ncbi Evolutionary biology: how to build a longer beak
    Nipam H Patel
    Nature 442:515-6. 2006
  38. doi Crustaceans
    Annalisa M VanHook
    Department of Integrative Biology, University of California, Berkeley, CA 94530 3140, USA
    Curr Biol 18:R547-50. 2008