Thomas L Parchman

Summary

Affiliation: University of Wyoming
Country: USA

Publications

  1. pmc Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery
    Thomas L Parchman
    Department of Botany, University of Wyoming, Laramie, WY 82071, USA
    BMC Genomics 11:180. 2010
  2. pmc Do highly divergent loci reside in genomic regions affecting reproductive isolation? A test using next-generation sequence data in Timema stick insects
    Patrik Nosil
    Department of Ecology and Evolutionary Biology, University of Colorado, Boulder 80303, USA
    BMC Evol Biol 12:164. 2012
  3. doi request reprint Genome-wide association genetics of an adaptive trait in lodgepole pine
    Thomas L Parchman
    Department of Botany, University of Wyoming, Laramie, WY 82071, USA
    Mol Ecol 21:2991-3005. 2012
  4. doi request reprint Low levels of population genetic structure in Pinus contorta (Pinaceae) across a geographic mosaic of co-evolution
    Thomas L Parchman
    Department of Botany, Dept 3165, 1000 E University Ave, University of Wyoming, Laramie, Wyoming 82071, USA
    Am J Bot 98:669-79. 2011
  5. pmc Genomics of isolation in hybrids
    Zachariah Gompert
    Department of Botany and Program in Ecology, University of Wyoming, Laramie, WY 82071, USA
    Philos Trans R Soc Lond B Biol Sci 367:439-50. 2012
  6. doi request reprint The local introduction of strongly interacting species and the loss of geographic variation in species and species interactions
    Craig W Benkman
    Department of Zoology and Physiology, University of Wyoming, Laramie, WY 82071, USA
    Mol Ecol 17:395-404. 2008
  7. doi request reprint Cross-species transferability of SSR loci developed from transciptome sequencing in lodgepole pine
    Mark R Lesser
    Program in Ecology, University of Wyoming, Laramie, WY 82071, USA
    Mol Ecol Resour 12:448-55. 2012
  8. pmc Genomic consequences of multiple speciation processes in a stick insect
    Patrik Nosil
    Department of Ecology and Evolutionary Biology, University of Colorado, Boulder, CO 80303, USA
    Proc Biol Sci 279:5058-65. 2012
  9. doi request reprint De novo characterization of the Timema cristinae transcriptome facilitates marker discovery and inference of genetic divergence
    Aaron A Comeault
    Department of Ecology and Evolutionary Biology, University of Colorado, Boulder, CO 80303, USA
    Mol Ecol Resour 12:549-61. 2012
  10. doi request reprint Patterns of coevolution in the adaptive radiation of crossbills
    Craig W Benkman
    Department of Zoology and Physiology, Program in Ecology, University of Wyoming, Laramie, Wyoming 82071, USA
    Ann N Y Acad Sci 1206:1-16. 2010

Detail Information

Publications11

  1. pmc Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery
    Thomas L Parchman
    Department of Botany, University of Wyoming, Laramie, WY 82071, USA
    BMC Genomics 11:180. 2010
    ..Here we describe a sequencing study of expressed genes from P. contorta, including their assembly and annotation, and their potential for molecular marker development to support population and association genetic studies...
  2. pmc Do highly divergent loci reside in genomic regions affecting reproductive isolation? A test using next-generation sequence data in Timema stick insects
    Patrik Nosil
    Department of Ecology and Evolutionary Biology, University of Colorado, Boulder 80303, USA
    BMC Evol Biol 12:164. 2012
    ..To the extent this is true, highly divergent loci between allopatric populations contribute to reproductive isolation in admixed populations...
  3. doi request reprint Genome-wide association genetics of an adaptive trait in lodgepole pine
    Thomas L Parchman
    Department of Botany, University of Wyoming, Laramie, WY 82071, USA
    Mol Ecol 21:2991-3005. 2012
    ..Our results provide a first genome-wide association map of serotiny in pines and demonstrate an inexpensive and efficient method for generating population genomic data...
  4. doi request reprint Low levels of population genetic structure in Pinus contorta (Pinaceae) across a geographic mosaic of co-evolution
    Thomas L Parchman
    Department of Botany, Dept 3165, 1000 E University Ave, University of Wyoming, Laramie, Wyoming 82071, USA
    Am J Bot 98:669-79. 2011
    ....
  5. pmc Genomics of isolation in hybrids
    Zachariah Gompert
    Department of Botany and Program in Ecology, University of Wyoming, Laramie, WY 82071, USA
    Philos Trans R Soc Lond B Biol Sci 367:439-50. 2012
    ....
  6. doi request reprint The local introduction of strongly interacting species and the loss of geographic variation in species and species interactions
    Craig W Benkman
    Department of Zoology and Physiology, University of Wyoming, Laramie, WY 82071, USA
    Mol Ecol 17:395-404. 2008
    ..Such introductions have eliminated incipient species of crossbills (Loxia spp.) co-evolving in arms races with conifers and will likely have considerable impacts on community structure and ecosystem processes...
  7. doi request reprint Cross-species transferability of SSR loci developed from transciptome sequencing in lodgepole pine
    Mark R Lesser
    Program in Ecology, University of Wyoming, Laramie, WY 82071, USA
    Mol Ecol Resour 12:448-55. 2012
    ..Our results indicate the utility of mining pyrosequenced EST collections for gene-based SSRs and provide a source of molecular markers that should bolster evolutionary genetic investigations across the genus Pinus...
  8. pmc Genomic consequences of multiple speciation processes in a stick insect
    Patrik Nosil
    Department of Ecology and Evolutionary Biology, University of Colorado, Boulder, CO 80303, USA
    Proc Biol Sci 279:5058-65. 2012
    ..Future work could adopt experimental, mapping and functional approaches to directly test which genetic regions are affected by selection and determine their physical location in the genome...
  9. doi request reprint De novo characterization of the Timema cristinae transcriptome facilitates marker discovery and inference of genetic divergence
    Aaron A Comeault
    Department of Ecology and Evolutionary Biology, University of Colorado, Boulder, CO 80303, USA
    Mol Ecol Resour 12:549-61. 2012
    ..The results suggest variable levels of genetic divergence and gene flow among taxon pairs and genes and illustrate a first step towards future genomic work in Timema...
  10. doi request reprint Patterns of coevolution in the adaptive radiation of crossbills
    Craig W Benkman
    Department of Zoology and Physiology, Program in Ecology, University of Wyoming, Laramie, Wyoming 82071, USA
    Ann N Y Acad Sci 1206:1-16. 2010
    ..The conditions favoring coevolution between crossbills and conifers are widespread, and coevolution has played at least some role in at least three fourths of the taxa of crossbills...
  11. pmc An introduced and a native vertebrate hybridize to form a genetic bridge to a second native species
    David B McDonald
    Department of Zoology and Physiology and Program in Ecology, University of Wyoming, Laramie, WY 82071, USA
    Proc Natl Acad Sci U S A 105:10837-42. 2008
    ..Although the present study involved an introduced species, similar patterns of hybridization could result from natural processes, including stream capture or geological formations (e.g., the Bering land bridge)...