Danh V Nguyen

Summary

Affiliation: University of California
Country: USA

Publications

  1. ncbi request reprint Tumor classification by partial least squares using microarray gene expression data
    Danh V Nguyen
    Center for Image Processing and Integrated Computing, University of California, Davis, CA 95616, USA
    Bioinformatics 18:39-50. 2002
  2. doi request reprint National perioperative outcomes of pulmonary lobectomy for cancer in the obese patient: a propensity score matched analysis
    Hunter Launer
    Division of Cardiothoracic Surgery, Department of Surgery, University of California, Davis Medical Center, Sacramento, CA 95817, USA
    J Thorac Cardiovasc Surg 145:1312-8. 2013
  3. ncbi request reprint Size of Stage IIIA primary lung cancers and survival: a surveillance, epidemiology and end results database analysis
    Steven Maximus
    Division of Cardiothoracic Surgery, Department of Public Heath Sciences, University of California, Davis, Sacramento, California, USA
    Am Surg 78:1232-7. 2012
  4. ncbi request reprint Partial least squares dimension reduction for microarray gene expression data with a censored response
    Danh V Nguyen
    Division of Biostatistics, Public Health Sciences, School of Medicine, University of California, One Shields Avenue, Davis, CA 95616 8638, USA
    Math Biosci 193:119-37. 2005
  5. doi request reprint Does ketogenic diet alter seizure sensitivity and cell loss following fluid percussion injury?
    Philip A Schwartzkroin
    Department of Neurological Surgery, University of California, Davis, Davis, CA 95616, United States
    Epilepsy Res 92:74-84. 2010
  6. pmc Dementia in fragile X-associated tremor/ataxia syndrome (FXTAS): comparison with Alzheimer's disease
    Andreea L Seritan
    Department of Psychiatry and Behavioral Sciences, University of California Davis, Sacramento, California 95817, USA
    Am J Med Genet B Neuropsychiatr Genet 147:1138-44. 2008
  7. pmc Comparison of Hospitalization Rates among For-Profit and Nonprofit Dialysis Facilities
    Lorien S Dalrymple
    Departments of Medicine, Public Health Sciences, and, Biochemistry and Molecular Medicine, University of California, Davis, California, San Francisco Department of Veterans Affairs Medical Center, San Francisco, California, Departments of Medicine and, Epidemiology, and Biostatistics, University of California, San Francisco, California, United States Renal Data System Special Studies Center, Stanford, California, Department of Medicine, Stanford University School of Medicine, Palo Alto, California, Department of Medicine, University of California Irvine, California
    Clin J Am Soc Nephrol 9:73-81. 2014
  8. doi request reprint Naive hypothesis testing for case series analysis with time-varying exposure onset measurement error: inference for infection-cardiovascular risk in patients on dialysis
    Sandra M Mohammed
    Division of Biostatistics, Department of Public Health Sciences, University of California, Davis, CA 95616, USA
    Biometrics 69:520-9. 2013
  9. pmc Modeling time-varying effects with generalized and unsynchronized longitudinal data
    Damla Senturk
    Department of Biostatistics, University of California, Los Angeles, CA 90095, USA
    Stat Med 32:2971-87. 2013
  10. doi request reprint Design considerations for case series models with exposure onset measurement error
    Sandra M Mohammed
    Division of Biostatistics, Department of Public Health Sciences, University of California, Davis, CA 95616, U S A
    Stat Med 32:772-86. 2013

Collaborators

Detail Information

Publications24

  1. ncbi request reprint Tumor classification by partial least squares using microarray gene expression data
    Danh V Nguyen
    Center for Image Processing and Integrated Computing, University of California, Davis, CA 95616, USA
    Bioinformatics 18:39-50. 2002
    ..Modification of existing statistical methodologies or development of new methodologies is needed for the analysis of microarray data...
  2. doi request reprint National perioperative outcomes of pulmonary lobectomy for cancer in the obese patient: a propensity score matched analysis
    Hunter Launer
    Division of Cardiothoracic Surgery, Department of Surgery, University of California, Davis Medical Center, Sacramento, CA 95817, USA
    J Thorac Cardiovasc Surg 145:1312-8. 2013
    ..We sought to compare hospital outcomes of obese patients with those of nonobese patients undergoing pulmonary lobectomy for cancer...
  3. ncbi request reprint Size of Stage IIIA primary lung cancers and survival: a surveillance, epidemiology and end results database analysis
    Steven Maximus
    Division of Cardiothoracic Surgery, Department of Public Heath Sciences, University of California, Davis, Sacramento, California, USA
    Am Surg 78:1232-7. 2012
    ..Increasing size of tumor is an independent negative risk factor for survival in patients undergoing lobectomy for N2 positive Stage IIIA NSCLC...
  4. ncbi request reprint Partial least squares dimension reduction for microarray gene expression data with a censored response
    Danh V Nguyen
    Division of Biostatistics, Public Health Sciences, School of Medicine, University of California, One Shields Avenue, Davis, CA 95616 8638, USA
    Math Biosci 193:119-37. 2005
    ..Additionally, we examine the effect of censoring on dimension reduction stage. The performance of all methods deteriorates for a high censoring rate, although PLS-PH performed relatively best overall...
  5. doi request reprint Does ketogenic diet alter seizure sensitivity and cell loss following fluid percussion injury?
    Philip A Schwartzkroin
    Department of Neurological Surgery, University of California, Davis, Davis, CA 95616, United States
    Epilepsy Res 92:74-84. 2010
    ....
  6. pmc Dementia in fragile X-associated tremor/ataxia syndrome (FXTAS): comparison with Alzheimer's disease
    Andreea L Seritan
    Department of Psychiatry and Behavioral Sciences, University of California Davis, Sacramento, California 95817, USA
    Am J Med Genet B Neuropsychiatr Genet 147:1138-44. 2008
    ..Further research is needed to outline the neuropsychiatric profile in FXTAS and the correlation of genetic markers with the progression and severity of cognitive loss...
  7. pmc Comparison of Hospitalization Rates among For-Profit and Nonprofit Dialysis Facilities
    Lorien S Dalrymple
    Departments of Medicine, Public Health Sciences, and, Biochemistry and Molecular Medicine, University of California, Davis, California, San Francisco Department of Veterans Affairs Medical Center, San Francisco, California, Departments of Medicine and, Epidemiology, and Biostatistics, University of California, San Francisco, California, United States Renal Data System Special Studies Center, Stanford, California, Department of Medicine, Stanford University School of Medicine, Palo Alto, California, Department of Medicine, University of California Irvine, California
    Clin J Am Soc Nephrol 9:73-81. 2014
    ..This study examined whether dialysis facility profit status was associated with the rate of hospitalization in patients starting dialysis...
  8. doi request reprint Naive hypothesis testing for case series analysis with time-varying exposure onset measurement error: inference for infection-cardiovascular risk in patients on dialysis
    Sandra M Mohammed
    Division of Biostatistics, Department of Public Health Sciences, University of California, Davis, CA 95616, USA
    Biometrics 69:520-9. 2013
    ..However, tests of individual risk period parameters are not generally valid. Practical guidelines are provided and illustrated with data from patients on dialysis...
  9. pmc Modeling time-varying effects with generalized and unsynchronized longitudinal data
    Damla Senturk
    Department of Biostatistics, University of California, Los Angeles, CA 90095, USA
    Stat Med 32:2971-87. 2013
    ..We derive subject-specific mean response trajectory predictions and study finite sample properties of the estimators...
  10. doi request reprint Design considerations for case series models with exposure onset measurement error
    Sandra M Mohammed
    Division of Biostatistics, Department of Public Health Sciences, University of California, Davis, CA 95616, U S A
    Stat Med 32:772-86. 2013
    ..To facilitate the design of case series studies, we provide publicly available web-based tools for determining power/sample size for both the measurement error case series model as well as the standard case series model...
  11. doi request reprint Immune-mediated disorders among women carriers of fragile X premutation alleles
    Tri Indah Winarni
    Medical Investigation of Neurodevelopmental Disorders Institute, University of California, Davis, Health System, Sacramento, USA
    Am J Med Genet A 158:2473-81. 2012
    ..4 times higher when compared to carriers without FXPOI (95% CI 1.1-5.0; P = 0.021). The likelihood of IMD in carriers with or without FXPOI is greater (OR 2.4, 95% CI 1.1-5.0; P = 0.021) compared to that of controls...
  12. doi request reprint Lifetime prevalence of mood and anxiety disorders in fragile X premutation carriers
    James A Bourgeois
    Department of Psychiatry and Behavioral Sciences, University of California, Davis Medical Center, Sacramento, USA
    J Clin Psychiatry 72:175-82. 2011
    ..The authors studied the lifetime prevalence of DSM-IV-TR psychiatric disorders in a population of adults with the fragile X premutation...
  13. doi request reprint Survival comparison of adenosquamous, squamous cell, and adenocarcinoma of the lung after lobectomy
    David T Cooke
    Division of Cardiothoracic Surgery, University of California, Davis Medical Center, Sacramento, California 95817, USA
    Ann Thorac Surg 90:943-8. 2010
    ..We examined a national database to see if ASC exhibited distinct clinical behavior from squamous cell (SC) and adenocarcinoma (AC) of the lung...
  14. pmc Plasma cytokine profiles in Fragile X subjects: is there a role for cytokines in the pathogenesis?
    Paul Ashwood
    Department of Medical Microbiology and Immunology, University of California, School of Medicine, Davis, CA 95616, USA
    Brain Behav Immun 24:898-902. 2010
    ..Altered immune responses have been described in autism and there is potential that in children with FXS and autism, an abnormal immune response may play a role...
  15. doi request reprint Early onset of neurological symptoms in fragile X premutation carriers exposed to neurotoxins
    Ripon Paul
    MIND Institute, University of California, Davis, School of Medicine, Sacramento, CA 95817, USA
    Neurotoxicology 31:399-402. 2010
    ....
  16. pmc Fibroblast phenotype in male carriers of FMR1 premutation alleles
    Dolores Garcia-Arocena
    Department of Biochemistry and Molecular Medicine, School of Medicine, University of California, Davis, CA 95616, USA
    Hum Mol Genet 19:299-312. 2010
    ..Fibroblast studies may also prove useful in screening and testing the efficacy of therapeutic interventions...
  17. pmc Expanded clinical phenotype of women with the FMR1 premutation
    Sarah M Coffey
    Department of Pediatrics, University of California at Davis Medical Center, Sacramento, California 95817, USA
    Am J Med Genet A 146:1009-16. 2008
    ..The remarkable degree of thyroid dysfunction (17% in the non-FXTAS group and 50% in the FXTAS group) warrants consideration of thyroid function studies in all female premutation carriers, particularly those with core features of FXTAS...
  18. ncbi request reprint Chemopreventive n-3 polyunsaturated fatty acids reprogram genetic signatures during colon cancer initiation and progression in the rat
    Laurie A Davidson
    Faculty of Nutrition, Texas A and M University, College Station, Texas 77843 2471, USA
    Cancer Res 64:6797-804. 2004
    ....
  19. ncbi request reprint Multi-class cancer classification via partial least squares with gene expression profiles
    Danh V Nguyen
    Department of Statistics, Texas A and M University, College Station, TX 77843, USA
    Bioinformatics 18:1216-26. 2002
    ..The need for multi-class discrimination methodologies is apparent in many microarray experiments where various cancer types are considered simultaneously...
  20. ncbi request reprint Partial least squares proportional hazard regression for application to DNA microarray survival data
    Danh V Nguyen
    Department of Statistics, Texas A and M University, College Station, TX 77843, USA
    Bioinformatics 18:1625-32. 2002
    ..We consider here the case that the number of covariates, p, exceeds the number of samples, N, a setting typical of gene expression data from DNA microarrays...
  21. ncbi request reprint Is cross-validation better than resubstitution for ranking genes?
    Ulisses Braga-Neto
    Section of Clinical Cancer Genetics, University of Texas M D Anderson Cancer Center, Houston, TX, USA
    Bioinformatics 20:253-8. 2004
    ..In all cases, resubstitution is competitive with cross-validation relative to ranking accuracy. This is in addition to the enormous savings in computation time afforded by resubstitution...
  22. doi request reprint Positron emission tomography and improved survival in patients with lung cancer: the Will Rogers phenomenon revisited
    Karen G Chee
    UC Davis Cancer Center, Sacramento, CA 95817, USA
    Arch Intern Med 168:1541-9. 2008
    ..We investigated whether use of highly sensitive positron emission tomography (PET) scanning in non-small cell lung cancer has had this effect...
  23. ncbi request reprint DNA microarray experiments: biological and technological aspects
    Danh V Nguyen
    Department of Statistics, Texas A and M University, College Station, Texas 77843 3143, USA
    Biometrics 58:701-17. 2002
    ..We emphasize the importance of basic research in DNA array technologies to improve the reliability of future experiments...
  24. doi request reprint A quantitative assessment of tremor and ataxia in FMR1 premutation carriers using CATSYS
    Dalila Aguilar
    Medical Investigation of Neurodevelopmental Disorders MIND Institute, University of California Davis Medical Center, Sacramento, California 95817, USA
    Am J Med Genet A 146:629-35. 2008
    ..0016). These results demonstrate that the quantitative measures of the CATSYS system can document significant differences in intention tremor and postural sway in patients with FXTAS compared to controls...