William M Nelson

Summary

Affiliation: University of Arizona
Country: USA

Publications

  1. pmc An elm EST database for identifying leaf beetle egg-induced defense genes
    Kerstin Buchel
    Freie Universitat Berlin, Applied Zoology Animal Ecology, Berlin, Germany
    BMC Genomics 13:242. 2012
  2. pmc Construction, alignment and analysis of twelve framework physical maps that represent the ten genome types of the genus Oryza
    Hyeran Kim
    Arizona Genomics Institute, Department of Plant Sciences, University of Arizona, Tucson, Arizona 85721, USA
    Genome Biol 9:R45. 2008
  3. pmc Methylation-sensitive linking libraries enhance gene-enriched sequencing of complex genomes and map DNA methylation domains
    William Nelson
    Arizona Genomics Computational Laboratory, BIO5 Institute, University of Arizona, Tucson, Arizona, USA
    BMC Genomics 9:621. 2008
  4. pmc A BAC-based physical map of Brachypodium distachyon and its comparative analysis with rice and wheat
    Yong Q Gu
    1Genomics and Gene Discovery Research Unit, USDA ARS, Western Regional Research Center, 800 Buchanan Street, Albany, CA 94710, USA
    BMC Genomics 10:496. 2009
  5. pmc Making a living while starving in the dark: metagenomic insights into the energy dynamics of a carbonate cave
    Marianyoly Ortiz
    Department of Soil, Water and Environmental Science, University of Arizona, Tucson, AZ, USA
    ISME J 8:478-91. 2014
  6. doi request reprint Profiling bacterial diversity and taxonomic composition on speleothem surfaces in Kartchner Caverns, AZ
    Marianyoly Ortiz
    Department of Soil, Water and Environmental Science, University of Arizona, Tucson, AZ 85721 0038, USA
    Microb Ecol 65:371-83. 2013
  7. ncbi request reprint Efficacy of clone fingerprinting methodologies
    William M Nelson
    Arizona Genomics Computational Laboratory, BIO5 Institute, University of Arizona, Tucson, AZ 85721, USA
    Genomics 89:160-5. 2007
  8. pmc SyMAP v3.4: a turnkey synteny system with application to plant genomes
    Carol Soderlund
    BIO5 Institute, 1657 Helen Street, University of Arizona, Tucson, AZ 85721, USA
    Nucleic Acids Res 39:e68. 2011
  9. pmc Whole-genome validation of high-information-content fingerprinting
    William M Nelson
    Arizona Genomics Computational Laboratory, BIO5 Institute, University of Arizona, Tucson, 85721, USA
    Plant Physiol 139:27-38. 2005
  10. doi request reprint Life at the hyperarid margin: novel bacterial diversity in arid soils of the Atacama Desert, Chile
    Julia W Neilson
    Department of Soil, Water and Environmental Science, University of Arizona, Shantz Bldg Room 429, P O Box 210038, Tucson, AZ 85721 0038, USA
    Extremophiles 16:553-66. 2012

Collaborators

Detail Information

Publications10

  1. pmc An elm EST database for identifying leaf beetle egg-induced defense genes
    Kerstin Buchel
    Freie Universitat Berlin, Applied Zoology Animal Ecology, Berlin, Germany
    BMC Genomics 13:242. 2012
    ..Little is known about the transcriptional changes that insect eggs trigger in plants and how such indirect defense mechanisms are orchestrated in the context of other biological processes...
  2. pmc Construction, alignment and analysis of twelve framework physical maps that represent the ten genome types of the genus Oryza
    Hyeran Kim
    Arizona Genomics Institute, Department of Plant Sciences, University of Arizona, Tucson, Arizona 85721, USA
    Genome Biol 9:R45. 2008
    ..sativa ssp. japonica reference genome sequence. Over 932 Mb of end sequence was analyzed for repeats, simple sequence repeats, miRNA and single nucleotide variations, providing the most extensive analysis of Oryza sequence to date...
  3. pmc Methylation-sensitive linking libraries enhance gene-enriched sequencing of complex genomes and map DNA methylation domains
    William Nelson
    Arizona Genomics Computational Laboratory, BIO5 Institute, University of Arizona, Tucson, Arizona, USA
    BMC Genomics 9:621. 2008
    ..These libraries differ from other gene-rich datasets in having larger insert sizes, and the MSLL clones are designed to provide reads localized to "epigenetic boundaries" where methylation begins or ends...
  4. pmc A BAC-based physical map of Brachypodium distachyon and its comparative analysis with rice and wheat
    Yong Q Gu
    1Genomics and Gene Discovery Research Unit, USDA ARS, Western Regional Research Center, 800 Buchanan Street, Albany, CA 94710, USA
    BMC Genomics 10:496. 2009
    ..A BAC-based physical map is one of them. A physical map will facilitate analysis of genome structure, comparative genomics, and assembly of the entire genome sequence...
  5. pmc Making a living while starving in the dark: metagenomic insights into the energy dynamics of a carbonate cave
    Marianyoly Ortiz
    Department of Soil, Water and Environmental Science, University of Arizona, Tucson, AZ, USA
    ISME J 8:478-91. 2014
    ..These strategies may provide key insights into other ecosystems dominated by oligotrophy, including aphotic subsurface soils or aquifers and photic systems such as arid deserts. ..
  6. doi request reprint Profiling bacterial diversity and taxonomic composition on speleothem surfaces in Kartchner Caverns, AZ
    Marianyoly Ortiz
    Department of Soil, Water and Environmental Science, University of Arizona, Tucson, AZ 85721 0038, USA
    Microb Ecol 65:371-83. 2013
    ....
  7. ncbi request reprint Efficacy of clone fingerprinting methodologies
    William M Nelson
    Arizona Genomics Computational Laboratory, BIO5 Institute, University of Arizona, Tucson, AZ 85721, USA
    Genomics 89:160-5. 2007
    ..Our data indicate that the five-enzyme method known as SNaPshot is the most effective and that the assembly can in fact be significantly improved with greater than 10x coverage...
  8. pmc SyMAP v3.4: a turnkey synteny system with application to plant genomes
    Carol Soderlund
    BIO5 Institute, 1657 Helen Street, University of Arizona, Tucson, AZ 85721, USA
    Nucleic Acids Res 39:e68. 2011
    ..A project manager is provided to organize and automate the analysis of multi-genome groups. The software is freely distributed at http://www.agcol.arizona.edu/software/symap...
  9. pmc Whole-genome validation of high-information-content fingerprinting
    William M Nelson
    Arizona Genomics Computational Laboratory, BIO5 Institute, University of Arizona, Tucson, 85721, USA
    Plant Physiol 139:27-38. 2005
    ..Finally, repetitive bands are isolated, and their effect on the assembly is studied...
  10. doi request reprint Life at the hyperarid margin: novel bacterial diversity in arid soils of the Atacama Desert, Chile
    Julia W Neilson
    Department of Soil, Water and Environmental Science, University of Arizona, Shantz Bldg Room 429, P O Box 210038, Tucson, AZ 85721 0038, USA
    Extremophiles 16:553-66. 2012
    ....