Ken Nealson

Summary

Affiliation: University of Southern California
Country: USA

Publications

  1. ncbi request reprint Breathing metals as a way of life: geobiology in action
    Kenneth H Nealson
    Department of Earth Sciences, University of Southern California, Los Angeles 90089 0740, USA
    Antonie Van Leeuwenhoek 81:215-22. 2002
  2. ncbi request reprint Metagenomics and the global ocean survey: what's in it for us, and why should we care?
    Kenneth H Nealson
    University of Southern California, Department of Earth Sciences, Los Angeles, CA, USA
    ISME J 1:185-7. 2007
  3. pmc Hydrogen and energy flow as "sensed" by molecular genetics
    Kenneth H Nealson
    Department of Earth Sciences, University of Southern California, Los Angeles, CA 90089, USA
    Proc Natl Acad Sci U S A 102:3889-90. 2005
  4. ncbi request reprint Searching for life in the Universe: unconventional methods for an unconventional problem
    K H Nealson
    University of Southern California, Los Angeles, CA 90089, USA
    Int Microbiol 5:223-30. 2002
  5. ncbi request reprint Hydrogen-driven subsurface lithoautotrophic microbial ecosystems (SLiMEs): do they exist and why should we care?
    Kenneth H Nealson
    Department of Earth Sciences, University of Southern California, 3651 Trousdale Parkway, Los Angeles, CA 90089 0740, USA
    Trends Microbiol 13:405-10. 2005
  6. pmc A Korarchaeote yields to genome sequencing
    Ken Nealson
    University of Southern California, Los Angeles, CA 90007, USA
    Proc Natl Acad Sci U S A 105:8805-6. 2008
  7. ncbi request reprint Microbial metal-ion reduction and Mars: extraterrestrial expectations?
    Kenneth H Nealson
    Department of Earth Sciences, University of Southern California, Los Angeles, California 90089 0740, USA
    Curr Opin Microbiol 5:296-300. 2002
  8. pmc Fixation and fate of C and N in the cyanobacterium Trichodesmium using nanometer-scale secondary ion mass spectrometry
    Juliette A Finzi-Hart
    Wrigley Institute for Environmental Studies and Department of Biological Sciences, University of Southern California, 3616 Trousdale Parkway, Los Angeles, CA 90089 0373, USA
    Proc Natl Acad Sci U S A 106:6345-50. 2009
  9. pmc The molecular density of states in bacterial nanowires
    Mohamed Y El-Naggar
    Department of Earth Sciences and Biological Sciences, University of Southern California, Los Angeles, California, USA
    Biophys J 95:L10-2. 2008
  10. ncbi request reprint Self-sustained phototrophic microbial fuel cells based on the synergistic cooperation between photosynthetic microorganisms and heterotrophic bacteria
    Zhen He
    Department of Earth Sciences, University of Southern California, Los Angeles, California 90089, USA
    Environ Sci Technol 43:1648-54. 2009

Detail Information

Publications63

  1. ncbi request reprint Breathing metals as a way of life: geobiology in action
    Kenneth H Nealson
    Department of Earth Sciences, University of Southern California, Los Angeles 90089 0740, USA
    Antonie Van Leeuwenhoek 81:215-22. 2002
    ..As these studies progress, it should be possible to separate several processes involved with metal reduction, including surface recognition, attachment, metal destabilization and reduction, and secondary mineral formation...
  2. ncbi request reprint Metagenomics and the global ocean survey: what's in it for us, and why should we care?
    Kenneth H Nealson
    University of Southern California, Department of Earth Sciences, Los Angeles, CA, USA
    ISME J 1:185-7. 2007
  3. pmc Hydrogen and energy flow as "sensed" by molecular genetics
    Kenneth H Nealson
    Department of Earth Sciences, University of Southern California, Los Angeles, CA 90089, USA
    Proc Natl Acad Sci U S A 102:3889-90. 2005
  4. ncbi request reprint Searching for life in the Universe: unconventional methods for an unconventional problem
    K H Nealson
    University of Southern California, Los Angeles, CA 90089, USA
    Int Microbiol 5:223-30. 2002
    ....
  5. ncbi request reprint Hydrogen-driven subsurface lithoautotrophic microbial ecosystems (SLiMEs): do they exist and why should we care?
    Kenneth H Nealson
    Department of Earth Sciences, University of Southern California, 3651 Trousdale Parkway, Los Angeles, CA 90089 0740, USA
    Trends Microbiol 13:405-10. 2005
    ....
  6. pmc A Korarchaeote yields to genome sequencing
    Ken Nealson
    University of Southern California, Los Angeles, CA 90007, USA
    Proc Natl Acad Sci U S A 105:8805-6. 2008
  7. ncbi request reprint Microbial metal-ion reduction and Mars: extraterrestrial expectations?
    Kenneth H Nealson
    Department of Earth Sciences, University of Southern California, Los Angeles, California 90089 0740, USA
    Curr Opin Microbiol 5:296-300. 2002
    ..This review thus ends with a short consideration of the evidence for magnetic 'proof' of the existence of past life on Mars...
  8. pmc Fixation and fate of C and N in the cyanobacterium Trichodesmium using nanometer-scale secondary ion mass spectrometry
    Juliette A Finzi-Hart
    Wrigley Institute for Environmental Studies and Department of Biological Sciences, University of Southern California, 3616 Trousdale Parkway, Los Angeles, CA 90089 0373, USA
    Proc Natl Acad Sci U S A 106:6345-50. 2009
    ..Our approach in combining stable isotope labeling with NanoSIMS and TEM imaging can be extended to other physiologically relevant elements and processes in other important microbial systems...
  9. pmc The molecular density of states in bacterial nanowires
    Mohamed Y El-Naggar
    Department of Earth Sciences and Biological Sciences, University of Southern California, Los Angeles, California, USA
    Biophys J 95:L10-2. 2008
    ..Our results indicate that the molecular constituents along the Shewanella nanowires possess an intricate electronic structure that plays a role in mediating transport...
  10. ncbi request reprint Self-sustained phototrophic microbial fuel cells based on the synergistic cooperation between photosynthetic microorganisms and heterotrophic bacteria
    Zhen He
    Department of Earth Sciences, University of Southern California, Los Angeles, California 90089, USA
    Environ Sci Technol 43:1648-54. 2009
    ..In addition, results from the air-cathode phototrophic MFC confirmed the light-induced current production while the test with the two-chamber MFC (in the dark) indicated the presence of electricigenic bacteria in the sediment...
  11. pmc Electrical transport along bacterial nanowires from Shewanella oneidensis MR-1
    Mohamed Y El-Naggar
    Department of Physics and Astronomy, University of Southern California, Los Angeles, CA 90089, USA
    Proc Natl Acad Sci U S A 107:18127-31. 2010
    ..The measurements reported here allow for bacterial nanowires to serve as a viable microbial strategy for extracellular electron transport...
  12. ncbi request reprint Geochemistry. Follow the nitrogen
    Douglas G Capone
    Department of Biological Sciences, University of Southern California, Los Angeles, CA 90089, USA
    Science 312:708-9. 2006
  13. pmc Current production and metal oxide reduction by Shewanella oneidensis MR-1 wild type and mutants
    Orianna Bretschger
    Mork Family Department of Chemical Engineering and Materials Science, University of Southern California, Los Angeles, California 90089, USA
    Appl Environ Microbiol 73:7003-12. 2007
    ..Overall, these data suggest a very complex picture of electron transfer to solid and soluble substrates by S. oneidensis MR-1...
  14. ncbi request reprint Electricity production coupled to ammonium in a microbial fuel cell
    Zhen He
    Department of Earth Sciences, University of Southern California, Los Angeles, California 90089, USA
    Environ Sci Technol 43:3391-7. 2009
    ..The present MFC achieved an ammonium removal efficiency of 49.2 +/- 5.9 or 69.7 +/- 3.6%, depending on hydraulic retention time, but exhibited a very low Coulombic efficiency...
  15. doi request reprint Quantification of electron transfer rates to a solid phase electron acceptor through the stages of biofilm formation from single cells to multicellular communities
    Jeffrey S McLean
    The J Craig Venter Institute, San Diego, CA, USA
    Environ Sci Technol 44:2721-7. 2010
    ..These data suggest a link between the ability of a surface to accept electrons and biofilm structure development...
  16. ncbi request reprint Reproduction and metabolism at - 10 degrees C of bacteria isolated from Siberian permafrost
    Corien Bakermans
    Department of Earth Sciences, University of Southern California, 3651 Trousdale Parkway, Los Angeles, CA 90089 0740, USA
    Environ Microbiol 5:321-6. 2003
    ..In addition, cells grown at - 10 degrees C exhibited major morphological changes at the ultrastructural level...
  17. pmc Low-temperature growth of Shewanella oneidensis MR-1
    Randa Abboud
    Department of Biological Sciences, 3651 Trousdale Pkwy, AHF 107, University of Southern California, Los Angeles, CA 90089 0371, USA
    Appl Environ Microbiol 71:811-6. 2005
    ..Frequent pilus-like structures were observed during the transition from 3 to 22 degrees C...
  18. ncbi request reprint Thiobacter subterraneus gen. nov., sp. nov., an obligately chemolithoautotrophic, thermophilic, sulfur-oxidizing bacterium from a subsurface hot aquifer
    Hisako Hirayama
    Subground Animalcule Retrieval SUGAR Project, Japan Agency for Marine Earth Science and Technology JAMSTEC, 2 15 Natsushima cho, Yokosuka 237 0061, Japan
    Int J Syst Evol Microbiol 55:467-72. 2005
    ..On the basis of its physiological and molecular properties, strain C55T (=JCM12421T=DSM 16629T=ATCC BAA-941T) is proposed as the type strain of Thiobacter subterraneus gen. nov., sp. nov...
  19. ncbi request reprint Lebetimonas acidiphila gen. nov., sp. nov., a novel thermophilic, acidophilic, hydrogen-oxidizing chemolithoautotroph within the 'Epsilonproteobacteria', isolated from a deep-sea hydrothermal fumarole in the Mariana Arc
    Ken Takai
    Subground Animalcule Retrieval SUGAR Project, Japan Agency for Marine Earth Science and Technology, 2 15 Natsushima cho, Yokosuka 237 0061, Japan
    Int J Syst Evol Microbiol 55:183-9. 2005
    ..It is, therefore, proposed that strain Pd55T (=JCM 12420T=DSM 16356T) represents the type strain of a novel species in a new genus, Lebetimonas acidiphila gen. nov., sp. nov...
  20. pmc Characterization of C1-metabolizing prokaryotic communities in methane seep habitats at the Kuroshima Knoll, southern Ryukyu Arc, by analyzing pmoA, mmoX, mxaF, mcrA, and 16S rRNA genes
    Fumio Inagaki
    Subground Animalcule Retrieval SUGAR Project, Frontier Research System for Extremophiles, Yokosuka, Japan
    Appl Environ Microbiol 70:7445-55. 2004
    ....
  21. ncbi request reprint Bacterial community shift along a subsurface geothermal water stream in a Japanese gold mine
    Hisako Hirayama
    Subground Animalcule Retrieval SUGAR Project, Extremobiosphere Research Center, Japan Agency for Marine Earth Science and Technology JAMSTEC, 2 15 Natsushima cho, Yokosuka 237 0061, Japan
    Extremophiles 9:169-84. 2005
    ....
  22. ncbi request reprint Microbial survival: the paleome: a sedimentary genetic record of past microbial communities
    Fumio Inagaki
    Subground Animalcule Retrieval SUGAR Project, Extremobiosphere Research Center, Japan Agency for Marine Earth Science and Technology JAMSTEC, Yokosuka, Japan
    Astrobiology 5:141-53. 2005
    ....
  23. ncbi request reprint Archaeal diversity in ODP legacy borehole 892b and associated seawater and sediments of the Cascadia Margin
    Brain D Lanoil
    University of California, Department of Environmental Sciences, Geology 2217 Riverside, CA 92521, USA
    FEMS Microbiol Ecol 54:167-77. 2005
    ....
  24. pmc Biogeographical distribution and diversity of microbes in methane hydrate-bearing deep marine sediments on the Pacific Ocean Margin
    Fumio Inagaki
    Subground Animalcule Retrieval Project, Extremobiosphere Research Center, Japan Agency for Marine Earth Science and Technology, Yokosuka 237 0061, Japan
    Proc Natl Acad Sci U S A 103:2815-20. 2006
    ..The recognition of which microbial groups prevail under distinctive subseafloor environments is a significant step toward determining the role these communities play in Earth's essential biogeochemical processes...
  25. ncbi request reprint Shewanella loihica sp. nov., isolated from iron-rich microbial mats in the Pacific Ocean
    Haichun Gao
    Environmental Sciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA
    Int J Syst Evol Microbiol 56:1911-6. 2006
    ..nov. is proposed. The type strain is PV-4(T) (=ATCC BAA-1088(T)=DSM 17748(T))...
  26. pmc Utilization of DNA as a sole source of phosphorus, carbon, and energy by Shewanella spp.: ecological and physiological implications for dissimilatory metal reduction
    Grigoriy E Pinchuk
    Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA 99352, USA
    Appl Environ Microbiol 74:1198-208. 2008
    ....
  27. pmc Transcriptional and proteomic analysis of a ferric uptake regulator (fur) mutant of Shewanella oneidensis: possible involvement of fur in energy metabolism, transcriptional regulation, and oxidative stress
    Dorothea K Thompson
    Environmental Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA
    Appl Environ Microbiol 68:881-92. 2002
    ..These results suggest a possible regulatory role of S. oneidensis MR-1 Fur in energy metabolism that extends the traditional model of Fur as a negative regulator of iron acquisition systems...
  28. ncbi request reprint Thiomicrospira thermophila sp. nov., a novel microaerobic, thermotolerant, sulfur-oxidizing chemolithomixotroph isolated from a deep-sea hydrothermal fumarole in the TOTO caldera, Mariana Arc, Western Pacific
    Ken Takai
    Subground Animalcule Retrieval SUGAR Project, Japan Agency for Marine Earth Science and Technology JAMSTEC, 2 15 Natsushima cho, Yokosuka 237 0061, Japan
    Int J Syst Evol Microbiol 54:2325-33. 2004
    ..nov. is proposed (type strain, I78(T)=JCM 12397(T)=DSM 16397(T))...
  29. ncbi request reprint Distribution and phylogenetic diversity of the subsurface microbial community in a Japanese epithermal gold mine
    Fumio Inagaki
    Subground Animalcule Retrieval SUGAR Project, Frontier Research System for Extremophiles, Japan Marine Science and Technology Center, Yokosuka 237 0061, Japan
    Extremophiles 7:307-17. 2003
    ..The cultivable microbial community detected by enrichment cultivation analysis largely matched that detected by the culture-independent molecular analysis...
  30. ncbi request reprint Isolation and phylogenetic diversity of members of previously uncultivated epsilon-Proteobacteria in deep-sea hydrothermal fields
    Ken Takai
    Japan Marine Science and Technology Center, 2 15 Natsushima cho, Yokosuka 237 0061, Japan
    FEMS Microbiol Lett 218:167-74. 2003
    ..The successful cultivation will enable the subsequent characterization of physiological properties and ecological impacts of a diversity of epsilon-Proteobacteria in the deep-sea hydrothermal environments...
  31. ncbi request reprint Deferribacter desulfuricans sp. nov., a novel sulfur-, nitrate- and arsenate-reducing thermophile isolated from a deep-sea hydrothermal vent
    Ken Takai
    Subground Animalcule Retrieval SUGAR Project, Frontier Research System for Extremophiles, Japan Marine Science and Technology Center, 2 15 Natsushima cho, Yokosuka 237 0061, Japan
    Int J Syst Evol Microbiol 53:839-46. 2003
    ..thermophilus BMA(T) on the basis of its physiological and genetic properties. The name Deferribacter desulfuricans sp. nov. (type strain SSM1(T) = JCM 11476(T) = DSM 14783(T)) is proposed...
  32. ncbi request reprint Genome sequence of the dissimilatory metal ion-reducing bacterium Shewanella oneidensis
    John F Heidelberg
    The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA
    Nat Biotechnol 20:1118-23. 2002
    ....
  33. ncbi request reprint Morphology and composition of the surface of Mars: Mars Odyssey THEMIS results
    Philip R Christensen
    Department of Geological Sciences, Arizona State University, Tempe, AZ 85287 6305, USA
    Science 300:2056-61. 2003
    ..Polar observations have identified temporal patches of water frost in the north polar cap. No thermal signatures associated with endogenic heat sources have been identified...
  34. pmc Microarray transcription profiling of a Shewanella oneidensis etrA mutant
    Alex S Beliaev
    Environmental Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831 6038, USA
    J Bacteriol 184:4612-6. 2002
    ..This is the first microarray study indicating a possible involvement of EtrA in the regulation of gene expression in S. oneidensis MR-1...
  35. ncbi request reprint Subfreezing activity of microorganisms and the potential habitability of Mars' polar regions
    Bruce M Jakosky
    Laboratory for Atmospheric and Space Physics, Department of Geological Sciences, University of Colorado, Boulder, CO 80303, USA
    Astrobiology 3:343-50. 2003
    ..The easy accessibility of the polar surface layer relative to the deep subsurface make these viable locations to search for evidence of life...
  36. ncbi request reprint Thioalkalimicrobium cyclicum sp. nov. and Thioalkalivibrio jannaschii sp. nov., novel species of haloalkaliphilic, obligately chemolithoautotrophic sulfur-oxidizing bacteria from hypersaline alkaline Mono Lake (California)
    Dimitry Yu Sorokin
    Institute of Microbiology, Russian Academy of Science, Moscow
    Int J Syst Evol Microbiol 52:913-20. 2002
    ..On the basis of genetic and phenotypic properties, strain ALM 2T (= DSM 14478T = JCM 11372T) is proposed as Thioalkalivibrio jannaschii sp. nov....
  37. ncbi request reprint Sulfurimonas autotrophica gen. nov., sp. nov., a novel sulfur-oxidizing epsilon-proteobacterium isolated from hydrothermal sediments in the Mid-Okinawa Trough
    Fumio Inagaki
    Subground Animalcule Retrieval SUGAR Project, Frontier Research System for Extremophiles, Japan Marine Science and Technology Center JAMSTEC, 2 15 Natsushima cho, Yokosuka 237 0061, Japan
    Int J Syst Evol Microbiol 53:1801-5. 2003
    ..On the basis of its physiological and molecular characteristics, strain OK10(T) (=ATCC BAA-671(T)=JCM 11897(T)) represents the sole species of a new genus, Sulfurimonas, for which the name Sulfurimonas autotrophica is proposed...
  38. pmc Microbial communities associated with geological horizons in coastal subseafloor sediments from the sea of okhotsk
    Fumio Inagaki
    Subground Animalcule Retrieval SUGAR Project, Frontier Research System for Extremophiles, Japan
    Appl Environ Microbiol 69:7224-35. 2003
    ....
  39. ncbi request reprint Sulfurovum lithotrophicum gen. nov., sp. nov., a novel sulfur-oxidizing chemolithoautotroph within the epsilon-Proteobacteria isolated from Okinawa Trough hydrothermal sediments
    Fumio Inagaki
    Subground Animalcule Retrieval SUGAR Project, Frontier Research System for Extremophiles, Japan Marine Science and Technology Center JAMSTEC, 2 15 Natsushima cho, Yokosuka 237 0061, Japan
    Int J Syst Evol Microbiol 54:1477-82. 2004
    ..On the basis of the physiological and molecular characteristics of this isolate, the type species of a novel genus, Sulfurovum lithotrophicum gen. nov., sp. nov., is proposed. The type strain is 42BKTT (= ATCC BAA-797T = JCM 12117T)...
  40. ncbi request reprint Marinobacter alkaliphilus sp. nov., a novel alkaliphilic bacterium isolated from subseafloor alkaline serpentine mud from Ocean Drilling Program Site 1200 at South Chamorro Seamount, Mariana Forearc
    Ken Takai
    Subground Animalcule Retrieval SUGAR Project, Frontier Research System for Extremophiles, Japan Agency for Marine Earth Science and Technology, 2 15 Natsushima cho, Yokosuka 237 0061, Japan
    Extremophiles 9:17-27. 2005
    ..Based on the physiological and molecular properties of the new isolate, we propose the name Marinobacter alkaliphilus sp. nov., type strain: ODP1200D-1.5T (JCM12291T and ATCC BAA-889T)...
  41. ncbi request reprint Geochemical and microbiological evidence for a hydrogen-based, hyperthermophilic subsurface lithoautotrophic microbial ecosystem (HyperSLiME) beneath an active deep-sea hydrothermal field
    Ken Takai
    Subground Animalcule Retrieval SUGAR Project, Frontier Research System for Extremophiles, Japan Marine Science and Technology Center JAMSTEC, 2 15 Natsushima cho, Yokosuka 237 0061, Japan
    Extremophiles 8:269-82. 2004
    ..These results imply that a HyperSLiME, consisting of methanogens and fermenters, occurs in this tectonically active subsurface zone, strongly supporting the existence of hydrogen-driven subsurface microbial communities...
  42. ncbi request reprint Molecular phylogenetic and isotopic evidence of two lineages of chemoautotrophic endosymbionts distinct at the subdivision level harbored in one host-animal type: the genus Alviniconcha (Gastropoda: Provannidae)
    Yohey Suzuki
    Extremobiosphere Research Center, Japan Agency for Marine Earth Science and Technology, 2 15 Natsushima cho, Yokosuka 237 0061, Japan
    FEMS Microbiol Lett 249:105-12. 2005
    ..Thus, it is concluded here that two lineages of chemoautotrophic bacteria, phylogenetically distinct at the subdivision level, occur as the primary endosymbiont in one host-animal type, which is unknown for the other metazoans...
  43. pmc Spatial distribution of marine crenarchaeota group I in the vicinity of deep-sea hydrothermal systems
    Ken Takai
    Subground Animalcule Retrieval Project, Frontier Research System for Extremophiles, Japan Marine Science and Technology Center, Yokosuka 237 0061, Japan
    Appl Environ Microbiol 70:2404-13. 2004
    ..These profiles were markedly different from the profiles of epsilon-Proteobacteria, which are abundant in the low temperatures of deep-sea hydrothermal environments...
  44. ncbi request reprint Hydrogenimonas thermophila gen. nov., sp. nov., a novel thermophilic, hydrogen-oxidizing chemolithoautotroph within the epsilon-Proteobacteria, isolated from a black smoker in a Central Indian Ridge hydrothermal field
    Ken Takai
    Subground Animalcule Retrieval SUGAR Project, Frontier Research System for Extremophiles, Japan Marine Science and Technology Centre, 2 15 Natsushima cho, Yokosuka 237 0061, Japan
    Int J Syst Evol Microbiol 54:25-32. 2004
    ..nov., sp. nov. is proposed, with strain EP1-55-1%T (=JCM 11971T=ATCC BAA-737T) as the type strain...
  45. ncbi request reprint Sulfurihydrogenibium subterraneum gen. nov., sp. nov., from a subsurface hot aquifer
    Ken Takai
    Subground Animalcule Retrieval SUGAR Project, Frontier Research System for Extremophiles, Japan Marine Science and Technology Center, 2 15 Natsushima cho, Yokosuka 237 0061, Japan
    Int J Syst Evol Microbiol 53:823-7. 2003
    ..The name Sulfurihydrogenibium subterraneum gen. nov., sp. nov. is proposed for this novel species; the type strain is HGMK1(T) (= JCM 11477(T) = ATCC BAA-562(T) = DSM 15120(T))...
  46. ncbi request reprint Microbial ecology meets electrochemistry: electricity-driven and driving communities
    Korneel Rabaey
    The Advanced Wastewater Management Centre, University of Queensland, Brisbane, Queensland, Australia
    ISME J 1:9-18. 2007
    ..While highlighting some of the major breakthroughs and addressing only recently obtained data, this review points out that despite rapid progress, many questions remain unanswered...
  47. ncbi request reprint Harnessing microbial appetites for remediation
    Kenneth H Nealson
    Nat Biotechnol 21:243-4. 2003
  48. ncbi request reprint A directional electron transfer regulator based on heme-chain architecture in the small tetraheme cytochrome c from Shewanella oneidensis
    Erisa Harada
    Institute for Protein Research, Osaka University, Yamadaoka, Suita, 565 0871, Osaka, Japan
    FEBS Lett 532:333-7. 2002
    ..This has provided new insights into the two-electron reduction of the flavin in the homologous flavocytochrome c-fumarate reductase...
  49. doi request reprint Towards environmental systems biology of Shewanella
    James K Fredrickson
    Biological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99352, USA
    Nat Rev Microbiol 6:592-603. 2008
    ....
  50. ncbi request reprint Crystal structures at atomic resolution reveal the novel concept of "electron-harvesting" as a role for the small tetraheme cytochrome c
    David Leys
    Laboratory of Protein Biochemistry and Protein Engineering, Department of Biochemistry, Physiology, and Microbiology, K L Ledeganckstraat 35, 9000 Gent, Belgium
    J Biol Chem 277:35703-11. 2002
    ..quot; This optimizes the efficiency of intermolecular electron transfer by maximizing chances of productive collision with redox partners...
  51. ncbi request reprint Gene and protein expression profiles of Shewanella oneidensis during anaerobic growth with different electron acceptors
    Alex S Beliaev
    Environmental Sciences Division, Oak Ridge National Laboratory, Tennessee 37831 6038, USA
    OMICS 6:39-60. 2002
    ..Protein identification by mass spectrometry indicated that the expression of prismane, dihydrolipoamide succinyltransferase, and alcaligin siderophore biosynthesis protein correlated with the microarray data...
  52. ncbi request reprint Elemental and redox analysis of single bacterial cells by x-ray microbeam analysis
    Kenneth M Kemner
    Environmental Research Division and Advanced Photon Source, Argonne National Laboratory, Argonne, IL 60439 4843, USA
    Science 306:686-7. 2004
    ..This technology can be applied to natural geomicrobiological systems...
  53. ncbi request reprint Analysis of the Shewanella oneidensis proteome by two-dimensional gel electrophoresis under nondenaturing conditions
    Carol S Giometti
    Argonne National Laboratory, Biosciences Division, Argonne, IL 60439, USA
    Proteomics 3:777-85. 2003
    ..We have also found protein interactions within both the soluble and membrane fractions. The method described will be useful for the characterization of the functional proteomes of microbial systems...
  54. pmc Global profiling of Shewanella oneidensis MR-1: expression of hypothetical genes and improved functional annotations
    Eugene Kolker
    BIATECH, 19310 North Creek Parkway, Suite 115, Bothell, WA 98011, USA
    Proc Natl Acad Sci U S A 102:2099-104. 2005
    ..We propose that this integrative approach offers a valuable means to undertake the enormous challenge of characterizing the rapidly growing number of hypothetical proteins with each newly sequenced genome...
  55. ncbi request reprint Identification of 42 possible cytochrome C genes in the Shewanella oneidensis genome and characterization of six soluble cytochromes
    Terry E Meyer
    Department of Biochemistry and Molecular Biophysics University of Arizona, Tucson, Arizona 85721, USA
    OMICS 8:57-77. 2004
    ..Published results on regulation of cytochromes from DNA microarrays and 2D-PAGE differ somewhat from our results, emphasizing the importance of multifaceted analyses in proteomics...
  56. pmc Novel chemoautotrophic endosymbiosis between a member of the Epsilonproteobacteria and the hydrothermal-vent gastropod Alviniconcha aff. hessleri (Gastropoda: Provannidae) from the Indian Ocean
    Yohey Suzuki
    Frontier Research System for Extremophiles, Japan Agency for Marine Earth Science and Technology, 2 15 Natsushima cho, Yokosuka 237 0061, Japan
    Appl Environ Microbiol 71:5440-50. 2005
    ....
  57. ncbi request reprint Genetic and functional properties of uncultivated thermophilic crenarchaeotes from a subsurface gold mine as revealed by analysis of genome fragments
    Takuro Nunoura
    Subground Animalcule Retrieval SUGAR Program, Extremebiosphere Research Center, Japan Agency for Marine Earth Science and Technology JAMSTEC, 2 15 Natsushima cho, Jokosuka, Japan
    Environ Microbiol 7:1967-84. 2005
    ..The reconstructed phylogenetic tree based on the 23S rRNA gene sequence reinforced the intermediate phylogenetic affiliation of HWCG III bridging the hyperthermophilic and non-thermophilic uncultivated Crenarchaeota...
  58. ncbi request reprint The NASA Astrobiology Roadmap
    David J Des Marais
    Space Science Division, NASA Ames Research Center, Moffett Field, California 94035, USA
    Astrobiology 3:219-35. 2003
    ..For each of these goals, Science Objectives outline more specific high-priority efforts for the next 3-5 years. These 18 objectives are being integrated with NASA strategic planning...
  59. pmc Host-symbiont relationships in hydrothermal vent gastropods of the genus Alviniconcha from the Southwest Pacific
    Yohey Suzuki
    Extremobiosphere Research Center, Japan Agency for Marine Earth Science and Technology, Yokosuka, Kanagawa 237 0061, Japan
    Appl Environ Microbiol 72:1388-93. 2006
    ..The results from the present study also suggest the possibility that Alviniconcha sp. types 1 and 2 separately inhabit hydrothermal vent sites approximately 120 m apart in the North Fiji Basin and 500 m apart in the Manus Basin...
  60. pmc Quorum sensing on a global scale: massive numbers of bioluminescent bacteria make milky seas
    Kenneth H Nealson
    Department of Molecular and Cellular Biology, 16 Divinity Avenue, Harvard University, Cambridge, MA 02138 2020, USA
    Appl Environ Microbiol 72:2295-7. 2006
  61. ncbi request reprint Molecular signals from ancient materials: challenges to deep-biosphere and paleo-environmental research--a response to the comments of Sinninghe Damsté and Coolen
    Fumio Inagaki
    Subground Animalcule Retrieval SUGAR Program, Extremobiosphere Research, Center, Japan
    Astrobiology 6:303-7. 2006
  62. ncbi request reprint Comparative genomics and experimental characterization of N-acetylglucosamine utilization pathway of Shewanella oneidensis
    Chen Yang
    Burnham Institute for Medical Research, La Jolla, California 92037, USA
    J Biol Chem 281:29872-85. 2006
    ..unambiguously identifies several genes involved in chitin metabolism, and describes a novel variant of the classical three-step biochemical conversion of GlcNAc to fructose 6-phosphate first described in Escherichia coli...
  63. pmc Electrically conductive bacterial nanowires produced by Shewanella oneidensis strain MR-1 and other microorganisms
    Yuri A Gorby
    Pacific Northwest National Laboratory, Richland, WA 99352, USA
    Proc Natl Acad Sci U S A 103:11358-63. 2006
    ....