Pratik Mukherjee

Summary

Affiliation: University of California
Country: USA

Publications

  1. pmc Diffusion imaging and tractography of congenital brain malformations
    Michael Wahl
    Department of Neurology, University of California, San Francisco, San Francisco, CA 94143 0628, USA
    Pediatr Radiol 40:59-67. 2010
  2. ncbi Probabilistic streamline q-ball tractography using the residual bootstrap
    Jeffrey I Berman
    UCSF Department of Radiology, University of California San Francisco, 185 Berry St, Suite 350, San Francisco, CA 94107, USA
    Neuroimage 39:215-22. 2008
  3. ncbi Tractography-based quantitation of diffusion tensor imaging parameters in white matter tracts of preterm newborns
    Savannah C Partridge
    Department of Radiology, University of California San Francisco, San Francisco, California 94143 2512, USA
    J Magn Reson Imaging 22:467-74. 2005
  4. ncbi Comparing microstructural and macrostructural development of the cerebral cortex in premature newborns: diffusion tensor imaging versus cortical gyration
    Amy R Deipolyi
    Gladstone Institute of Neurological Disease, University of California, San Francisco, CA 94143, USA
    Neuroimage 27:579-86. 2005
  5. ncbi Quantitative diffusion tensor MRI fiber tractography of sensorimotor white matter development in premature infants
    Jeffrey I Berman
    Department of Radiology, University of California, San Francisco, San Francisco, CA 94143, USA
    Neuroimage 27:862-71. 2005
  6. ncbi Pyramidal tract maturation after brain injury in newborns with heart disease
    Savannah C Partridge
    Department of Radiology, University of California, San Francisco, San Francisco, CA, USA
    Ann Neurol 59:640-51. 2006
  7. doi High-resolution intracranial MRA at 7T using autocalibrating parallel imaging: initial experience in vascular disease patients
    Cornelius Von Morze
    Department of Radiology, University of California, San Francisco, CA 94143 2512, USA
    Magn Reson Imaging 26:1329-33. 2008
  8. pmc High-resolution phased-array MRI of the human brain at 7 tesla: initial experience in multiple sclerosis patients
    Meredith Metcalf
    UCSF UC Berkeley Joint Graduate Group in Bioengineering, University of California, San Francisco and Berkeley, CA 94017, USA
    J Neuroimaging 20:141-7. 2010
  9. pmc Development and initial evaluation of 7-T q-ball imaging of the human brain
    Pratik Mukherjee
    Department of Radiology, University of California San Francisco, San Francisco, CA 94143 0628, USA
    Magn Reson Imaging 26:171-80. 2008
  10. pmc Test-retest reliability of computational network measurements derived from the structural connectome of the human brain
    Julia P Owen
    Department of Radiology and Biomedical Imaging, University of California, San Francisco, California 94107, USA
    Brain Connect 3:160-76. 2013

Collaborators

Detail Information

Publications35

  1. pmc Diffusion imaging and tractography of congenital brain malformations
    Michael Wahl
    Department of Neurology, University of California, San Francisco, San Francisco, CA 94143 0628, USA
    Pediatr Radiol 40:59-67. 2010
    ..Finally, we discuss potential uses for diffusion imaging of developmental disorders in the clinical and research realms...
  2. ncbi Probabilistic streamline q-ball tractography using the residual bootstrap
    Jeffrey I Berman
    UCSF Department of Radiology, University of California San Francisco, 185 Berry St, Suite 350, San Francisco, CA 94107, USA
    Neuroimage 39:215-22. 2008
    ..This fiber tracking algorithm is an improvement upon prior diffusion tensor methods and the q-ball data can be acquired in a clinically feasible time frame...
  3. ncbi Tractography-based quantitation of diffusion tensor imaging parameters in white matter tracts of preterm newborns
    Savannah C Partridge
    Department of Radiology, University of California San Francisco, San Francisco, California 94143 2512, USA
    J Magn Reson Imaging 22:467-74. 2005
    ..To evaluate the feasibility of performing diffusion tensor tractography (DTT) to map and quantify the pyramidal white matter tracts of premature newborns...
  4. ncbi Comparing microstructural and macrostructural development of the cerebral cortex in premature newborns: diffusion tensor imaging versus cortical gyration
    Amy R Deipolyi
    Gladstone Institute of Neurological Disease, University of California, San Francisco, CA 94143, USA
    Neuroimage 27:579-86. 2005
    ..0001) but not in the tangential diffusivities (P > 0.05)...
  5. ncbi Quantitative diffusion tensor MRI fiber tractography of sensorimotor white matter development in premature infants
    Jeffrey I Berman
    Department of Radiology, University of California, San Francisco, San Francisco, CA 94143, USA
    Neuroimage 27:862-71. 2005
    ..In summary, deterministic and probabilistic DTI fiber tracking methods were used to quantify the developmental changes of motor and somatosensory pathways in premature infants...
  6. ncbi Pyramidal tract maturation after brain injury in newborns with heart disease
    Savannah C Partridge
    Department of Radiology, University of California, San Francisco, San Francisco, CA, USA
    Ann Neurol 59:640-51. 2006
    ..Our objective was to quantify white matter tract development in term newborns with congenital heart disease, a population at high risk for perioperative brain injury, using magnetic resonance imaging diffusion tensor tractography (DTT)...
  7. doi High-resolution intracranial MRA at 7T using autocalibrating parallel imaging: initial experience in vascular disease patients
    Cornelius Von Morze
    Department of Radiology, University of California, San Francisco, CA 94143 2512, USA
    Magn Reson Imaging 26:1329-33. 2008
    ..In this study, we applied parallel imaging to 7T TOF MRA studies of normal volunteers and patients with vascular disease, in order to obtain very high resolution (0.12 mm(3)) images within a reasonable scan time...
  8. pmc High-resolution phased-array MRI of the human brain at 7 tesla: initial experience in multiple sclerosis patients
    Meredith Metcalf
    UCSF UC Berkeley Joint Graduate Group in Bioengineering, University of California, San Francisco and Berkeley, CA 94017, USA
    J Neuroimaging 20:141-7. 2010
    ..Clear involvement of the GM was observed with improved morphological detail in comparison to imaging at lower-field strength...
  9. pmc Development and initial evaluation of 7-T q-ball imaging of the human brain
    Pratik Mukherjee
    Department of Radiology, University of California San Francisco, San Francisco, CA 94143 0628, USA
    Magn Reson Imaging 26:171-80. 2008
    ....
  10. pmc Test-retest reliability of computational network measurements derived from the structural connectome of the human brain
    Julia P Owen
    Department of Radiology and Biomedical Imaging, University of California, San Francisco, California 94107, USA
    Brain Connect 3:160-76. 2013
    ....
  11. ncbi Diffusion tensor imaging: serial quantitation of white matter tract maturity in premature newborns
    Savannah C Partridge
    Department of Radiology, University of California, San Francisco, San Francisco, CA 94143, USA
    Neuroimage 22:1302-14. 2004
    ..This work contributes to the understanding of normal white matter development in the preterm neonatal brain, an important step toward the use of DTI for the improved evaluation and treatment of white matter injury of prematurity...
  12. pmc Development of a robust method for generating 7.0 T multichannel phase images of the brain with application to normal volunteers and patients with neurological diseases
    Kathryn E Hammond
    University of California San Francisco Berkeley Joint Graduate Group in Bioengineering, San Francisco, CA 94158 2532, USA
    Neuroimage 39:1682-92. 2008
    ..5 T. The clinical images showed novel contrast in MS plaques and depicted microhemorrhages and abnormal vasculature in brain tumors with unsurpassed resolution and contrast...
  13. ncbi Aberrant white matter microstructure in children with 16p11.2 deletions
    Julia P Owen
    Department of Radiology and Biomedical Imaging, University of California, San Francisco, San Francisco, California 94107, Program in Bioengineering, Department of Neurology, University of California, San Francisco, San Francisco, California 94158, Department of Radiology, Children s Hospital of Philadelphia, Philadelphia, Pennsylvania 19104, Simons Foundation, New York, New York 10010, Departments of Pediatrics and Medicine, Columbia University Medical Center, New York, New York 10032, and Center for Brain Science, Harvard University, Cambridge, Massachusetts 02138
    J Neurosci 34:6214-23. 2014
    ..These findings suggest that deletion of the 16p11.2 locus is associated with a unique widespread pattern of aberrant white matter microstructure that may underlie the impaired cognition characteristic of this CNV. ..
  14. pmc Resting state magnetoencephalography functional connectivity in traumatic brain injury
    Phiroz E Tarapore
    Department of Neurological Surgery, University of California, San Francisco, California 94107 0946, USA
    J Neurosurg 118:1306-16. 2013
    ..Finally, they hypothesize that the reductions of functional connectivity can improve over time across serial MEG scans during recovery from TBI...
  15. pmc Resting-state networks and the functional connectome of the human brain in agenesis of the corpus callosum
    Julia P Owen
    1 Department of Radiology and Biomedical Imaging, University of California, San Francisco, California
    Brain Connect 3:547-62. 2013
    ....
  16. pmc Phased array 3D MR spectroscopic imaging of the brain at 7 T
    Duan Xu
    Joint UCSF UC Berkeley Graduate Group in Bioengineering, University of California, San Francisco and Berkeley, CA 94143, USA
    Magn Reson Imaging 26:1201-6. 2008
    ..The new 7 T MRSI sequence was tested in volunteer studies and demonstrated the feasibility of obtaining high-SNR phased-array 3D MRSI from the human brain...
  17. pmc Diffusion tensor imaging of Aicardi syndrome
    Michael Wahl
    Department of Neurology, University of California, San Francisco, San Francisco, California 94143 0114, USA
    Pediatr Neurol 43:87-91. 2010
    ..Furthermore, such disruption in white matter organization appears to be a feature specific to Aicardi syndrome, and not shared by other neurodevelopmental disorders with similar anatomic manifestations...
  18. ncbi Visualizing white matter pathways in the living human brain: diffusion tensor imaging and beyond
    Christopher P Hess
    Department of Radiology, University of California at San Francisco, 505 Parnassus Avenue, Box 0628, San Francisco, CA 94143 0628, USA
    Neuroimaging Clin N Am 17:407-26, vii. 2007
    ..Diffusion MR imaging is a powerful adjunct to techniques for studying brain function...
  19. ncbi Single-shot fast spin-echo diffusion tensor imaging of the brain and spine with head and phased array coils at 1.5 T and 3.0 T
    Duan Xu
    Department of Radiology, University of California, San Francisco CA, USA
    Magn Reson Imaging 22:751-9. 2004
    ..The diffusion tensor SSFSE method was also able to assess diffusion abnormalities in a brain stem hemorrhage, unaffected by the spatial distortions that limited conventional EPI acquisition...
  20. ncbi Early brain injury in premature newborns detected with magnetic resonance imaging is associated with adverse early neurodevelopmental outcome
    Steven P Miller
    Department of Neurology, University of California San Francisco, San Francisco, CA 94143, USA
    J Pediatr 147:609-16. 2005
    ..To determine the neurodevelopmental outcome of prematurely born newborns with magnetic resonance imaging (MRI) abnormalities...
  21. doi Independent component analysis of DTI reveals multivariate microstructural correlations of white matter in the human brain
    Yi Ou Li
    Department of Radiology and Biomedical Imaging, University of California, San Francisco, California 94107 0946, USA
    Hum Brain Mapp 33:1431-51. 2012
    ....
  22. ncbi Intracranial time-of-flight MR angiography at 7T with comparison to 3T
    Cornelius Von Morze
    Department of Radiology, UCSF, San Francisco, California, USA
    J Magn Reson Imaging 26:900-4. 2007
    ..To establish the feasibility of intracranial time-of-flight (TOF) MR angiography (MRA) at 7T using phased array coils and to compare its performance to 3T...
  23. pmc Microstructural correlations of white matter tracts in the human brain
    Michael Wahl
    Department of Radiology and Biomedical Imaging, University of California, San Francisco, CA 94143 0628, USA
    Neuroimage 51:531-41. 2010
    ....
  24. ncbi Diffusion tensor imaging and tractography of human brain development
    Pratik Mukherjee
    Neuroradiology Section, Department of Radiology, University of California at San Francisco, CA 94143 0628, USA
    Neuroimaging Clin N Am 16:19-43, vii. 2006
    ..The new insights into brain maturation afforded by DTI promise to improve the diagnostic evaluation of an array of congenital, metabolic, and neurodevelopmental disorders...
  25. ncbi Diffusion tensor imaging and fiber tractography in acute stroke
    Pratik Mukherjee
    Neuroradiology Section, Department of Radiology, University of California at San Francisco, CA 94143 0628, USA
    Neuroimaging Clin N Am 15:655-65, xii. 2005
    ..DTI and fiber tractography may prove useful in elucidating alterations in brain connectivity resulting from neuroplasticity after stroke...
  26. ncbi Q-ball reconstruction of multimodal fiber orientations using the spherical harmonic basis
    Christopher P Hess
    Department of Radiology, University of California San Francisco, San Francisco, California 94143 0628, USA
    Magn Reson Med 56:104-17. 2006
    ..In vivo results from 3T whole-brain HARDI of adult volunteers are also provided to verify the underlying mathematical theory...
  27. pmc Pediatric brain injury: can DTI scalars predict functional outcome?
    Duan Xu
    Department of Radiology and Biomedical Imaging, University of California San Francisco, 1 Irving St, AC112, Box 2512, San Francisco, CA 94143, USA
    Pediatr Radiol 43:55-9. 2013
    ..Other more complex mathematical models and post-processing uses are also discussed briefly...
  28. pmc Magnetic resonance imaging improves 3-month outcome prediction in mild traumatic brain injury
    Esther L Yuh
    Brain and Spinal Injury Center, San Francisco, CA, USA
    Ann Neurol 73:224-35. 2013
    ..To determine the clinical relevance, if any, of traumatic intracranial findings on early head computed tomography (CT) and brain magnetic resonance imaging (MRI) to 3-month outcome in mild traumatic brain injury (MTBI)...
  29. ncbi The structural connectome of the human brain in agenesis of the corpus callosum
    Julia P Owen
    Department of Radiology and Biomedical Imaging, University of California, San Francisco, CA 94107, USA
    Neuroimage 70:340-55. 2013
    ..Furthermore, this work offers a proof of principle for the utility of the connectome framework in neurodevelopmental disorders...
  30. ncbi Agenesis of the corpus callosum, optic coloboma, intractable seizures, craniofacial and skeletal dysmorphisms: an autosomal recessive disorder similar to Temtamy syndrome
    Jiang Li
    Department of Neurology, University of California, San Francisco, California 94143, USA
    Am J Med Genet A 143:1900-5. 2007
    ..This case presents many features similar to Temtamy syndrome and will help in establishing the spectrum of this disorder...
  31. ncbi Diffusion tensor imaging with three-dimensional fiber tractography of traumatic axonal shearing injury: an imaging correlate for the posterior callosal "disconnection" syndrome: case report
    Tuong H Le
    Department of Radiology, University of California, San Francisco, San Francisco, California
    Neurosurgery 56:189. 2005
    ..To demonstrate that magnetic resonance diffusion tensor imaging (DTI) with three-dimensional (3-D) fiber tractography can visualize traumatic axonal shearing injury that results in posterior callosal disconnection syndrome...
  32. ncbi A system for measuring regional surface folding of the neonatal brain from MRI
    Claudia Rodriguez-Carranza
    NCIRE VAMC, San Francisco, CA, USA
    Med Image Comput Comput Assist Interv 9:201-8. 2006
    ..Such a system provides a tool to allow the study of structural development in the neonatal brain within specific functional subregions, which may be critical in identifying later neurological impairment...
  33. doi Diffusion imaging of congenital brain malformations
    Mike Wahl
    Department of Neurology, University of California, San Francisco, CA, USA
    Semin Pediatr Neurol 16:111-9. 2009
    ....
  34. doi Focal lesions in acute mild traumatic brain injury and neurocognitive outcome: CT versus 3T MRI
    Hana Lee
    Neurological Surgery, University of California, San Francisco, California 94143, USA
    J Neurotrauma 25:1049-56. 2008
    ....
  35. ncbi Early laminar organization of the human cerebrum demonstrated with diffusion tensor imaging in extremely premature infants
    Luis C Maas
    Department of Radiology, University of California at San Francisco, San Francisco, CA 94143, USA
    Neuroimage 22:1134-40. 2004
    ..Automated segmentation of diffusion tensor images to reveal the laminar architecture of the developing human cerebrum is also demonstrated...