Vladimir N Minin

Summary

Affiliation: University of Washington
Country: USA

Publications

  1. ncbi Smooth skyride through a rough skyline: Bayesian coalescent-based inference of population dynamics
    Vladimir N Minin
    Department of Statistics, University of Washington, USA
    Mol Biol Evol 25:1459-71. 2008
  2. ncbi Fast, accurate and simulation-free stochastic mapping
    Vladimir N Minin
    Department of Statistics, University of Washington, Seattle, WA 98195 4322, USA
    Philos Trans R Soc Lond B Biol Sci 363:3985-95. 2008
  3. ncbi Phylogenetic mapping of recombination hotspots in human immunodeficiency virus via spatially smoothed change-point processes
    Vladimir N Minin
    Department of Biomathematics, David Geffen School of Medicine, University of California, Los Angeles, California 90095, USA
    Genetics 175:1773-85. 2007
  4. ncbi Accounting for uncertainty in the tree topology has little effect on the decision-theoretic approach to model selection in phylogeny estimation
    Zaid Abdo
    Initiative in Bioinformatics and Evolutionary Studies IBEST, University of Idaho, Moscow
    Mol Biol Evol 22:691-703. 2005
  5. ncbi Dual multiple change-point model leads to more accurate recombination detection
    Vladimir N Minin
    Department of Biomathematics, David Geffen School of Medicine, University of California Los Angeles, CA 90095-1766, USA
    Bioinformatics 21:3034-42. 2005
  6. ncbi cBrother: relaxing parental tree assumptions for Bayesian recombination detection
    Fang Fang
    Bioinformatics and Computational Biology Program, Iowa State University, Ames, IA 50011, USA
    Bioinformatics 23:507-8. 2007

Detail Information

Publications6

  1. ncbi Smooth skyride through a rough skyline: Bayesian coalescent-based inference of population dynamics
    Vladimir N Minin
    Department of Statistics, University of Washington, USA
    Mol Biol Evol 25:1459-71. 2008
    ..Next, we estimate the demographic histories of human influenza A hemagglutinin sequences, serially sampled throughout 3 flu seasons...
  2. ncbi Fast, accurate and simulation-free stochastic mapping
    Vladimir N Minin
    Department of Statistics, University of Washington, Seattle, WA 98195 4322, USA
    Philos Trans R Soc Lond B Biol Sci 363:3985-95. 2008
    ..We conclude by mapping synonymous and non-synonymous mutations onto branches of an HIV intrahost phylogenetic tree and comparing selection pressure on terminal and internal tree branches...
  3. ncbi Phylogenetic mapping of recombination hotspots in human immunodeficiency virus via spatially smoothed change-point processes
    Vladimir N Minin
    Department of Biomathematics, David Geffen School of Medicine, University of California, Los Angeles, California 90095, USA
    Genetics 175:1773-85. 2007
    ..We then proceed with the analysis of 42 human immunodeficiency virus (HIV) intersubtype gag recombinants and identify a putative recombination hotspot...
  4. ncbi Accounting for uncertainty in the tree topology has little effect on the decision-theoretic approach to model selection in phylogeny estimation
    Zaid Abdo
    Initiative in Bioinformatics and Evolutionary Studies IBEST, University of Idaho, Moscow
    Mol Biol Evol 22:691-703. 2005
    ..That is, LRT, Extended-AIC, and AIC result in more complicated models that do not contribute to the performance of the phylogenetic inference, yet cause a significant increase in the time required for data analysis...
  5. ncbi Dual multiple change-point model leads to more accurate recombination detection
    Vladimir N Minin
    Department of Biomathematics, David Geffen School of Medicine, University of California Los Angeles, CA 90095-1766, USA
    Bioinformatics 21:3034-42. 2005
    ..We also analyze two real HIV sequences to identify recombination break-points using the dual MCP model...
  6. ncbi cBrother: relaxing parental tree assumptions for Bayesian recombination detection
    Fang Fang
    Bioinformatics and Computational Biology Program, Iowa State University, Ames, IA 50011, USA
    Bioinformatics 23:507-8. 2007
    ..Availability: cBrother can be freely downloaded from http://www.biomath.org/dormanks/ and can be compiled on Linux, Macintosh and Windows operating systems. Online documentation and a tutorial are also available at the site...