Christopher S Miller

Summary

Affiliation: University of California
Country: USA

Publications

  1. pmc EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data
    Christopher S Miller
    Department of Earth and Planetary Science, University of California, Berkeley, 307 McCone Hall 4767, Berkeley, CA 94720, USA
    Genome Biol 12:R44. 2011
  2. pmc Short-read assembly of full-length 16S amplicons reveals bacterial diversity in subsurface sediments
    Christopher S Miller
    Department of Earth and Planetary Science, University of California, Berkeley, California, United States of America
    PLoS ONE 8:e56018. 2013
  3. pmc Biostimulation induces syntrophic interactions that impact C, S and N cycling in a sediment microbial community
    Kim M Handley
    Department of Earth and Planetary Science, University of California, Berkeley, CA 94720 4767, USA
    ISME J 7:800-16. 2013
  4. pmc Heterotrophic archaea contribute to carbon cycling in low-pH, suboxic biofilm communities
    Nicholas B Justice
    University of California Berkeley, Berkeley, California, USA
    Appl Environ Microbiol 78:8321-30. 2012
  5. ncbi Fermentation, hydrogen, and sulfur metabolism in multiple uncultivated bacterial phyla
    Kelly C Wrighton
    Department of Earth and Planetary Science, University of California, Berkeley, Berkeley, CA 94720, USA
    Science 337:1661-5. 2012

Collaborators

Detail Information

Publications5

  1. pmc EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data
    Christopher S Miller
    Department of Earth and Planetary Science, University of California, Berkeley, 307 McCone Hall 4767, Berkeley, CA 94720, USA
    Genome Biol 12:R44. 2011
    ..An implementation of the method is freely available at https://github.com/csmiller/EMIRGE...
  2. pmc Short-read assembly of full-length 16S amplicons reveals bacterial diversity in subsurface sediments
    Christopher S Miller
    Department of Earth and Planetary Science, University of California, Berkeley, California, United States of America
    PLoS ONE 8:e56018. 2013
    ..The method allows for sensitive, accurate profiling of the "long tail" of low abundance organisms that exist in many microbial communities, and can resolve population dynamics in response to environmental change...
  3. pmc Biostimulation induces syntrophic interactions that impact C, S and N cycling in a sediment microbial community
    Kim M Handley
    Department of Earth and Planetary Science, University of California, Berkeley, CA 94720 4767, USA
    ISME J 7:800-16. 2013
    ..Results give an insight into ecosystem behavior following addition of simple organic carbon to the subsurface, and demonstrate a range of biological processes and community interactions were stimulated...
  4. pmc Heterotrophic archaea contribute to carbon cycling in low-pH, suboxic biofilm communities
    Nicholas B Justice
    University of California Berkeley, Berkeley, California, USA
    Appl Environ Microbiol 78:8321-30. 2012
    ..These findings indicate dominance of acidophilic archaea in degrading biofilms and suggest that they play roles in anaerobic nutrient cycling at low pH...
  5. ncbi Fermentation, hydrogen, and sulfur metabolism in multiple uncultivated bacterial phyla
    Kelly C Wrighton
    Department of Earth and Planetary Science, University of California, Berkeley, Berkeley, CA 94720, USA
    Science 337:1661-5. 2012
    ..For six organisms, the UGA stop codon is translated as tryptophan. All bacteria studied here may play previously unrecognized roles in hydrogen production, sulfur cycling, and fermentation of refractory sedimentary carbon...