Andrew P Martin

Summary

Affiliation: University of Colorado
Country: USA

Publications

  1. ncbi request reprint Conservation of a dinucleotide simple sequence repeat locus in sharks
    Andrew P Martin
    Department of Environmental, Population, and Organismic Biology, University of Colorado, Boulder, CO 80309, USA
    Mol Phylogenet Evol 23:205-13. 2002
  2. ncbi request reprint Substitution rates of organelle and nuclear genes in sharks: implicating metabolic rate (again)
    A P Martin
    Department of Environmental Population and Organismic Biology, University of Colorado, Boulder 80309, USA
    Mol Biol Evol 16:996-1002. 1999
  3. ncbi request reprint Perils of paralogy: using HSP70 genes for inferring organismal phylogenies
    Andrew P Martin
    Department of EPO Biology, University of Colorado, Boulder, Colorado 80309, USA
    Syst Biol 51:570-87. 2002
  4. pmc Phylogenetic approaches for describing and comparing the diversity of microbial communities
    Andrew P Martin
    Department of Environmental, Population and Organismic Biology, University of Colorado, Boulder, Colorado 80309, USA
    Appl Environ Microbiol 68:3673-82. 2002
  5. ncbi request reprint The phylogenetic placement of chondrichthyes: inferences from analysis of multiple genes and implications for comparative studies
    A Martin
    Department of EPO Biology, University of Colorado, Boulder 80309, USA
    Genetica 111:349-57. 2001
  6. ncbi request reprint Choosing among alternative trees of multigene families
    A P Martin
    Department of Environmental, Population, and Organismic Biology, University of Colorado, Boulder, Colorado 80309, USA
    Mol Phylogenet Evol 16:430-9. 2000
  7. pmc Regional endemism and cryptic species revealed by molecular and morphological analysis of a widespread species of Neotropical catfish
    A P Martin
    Department of Environmental, Population and Organismic Biology, University of Colorado, Boulder 80309, USA
    Proc Biol Sci 267:1135-41. 2000
  8. pmc Bacterial communities of Bartonella-positive fleas: diversity and community assembly patterns
    Ryan T Jones
    Department of Ecology and Evolutionary Biology, CB334, University of Colorado Boulder, Boulder, Colorado 80309, USA
    Appl Environ Microbiol 74:1667-70. 2008
  9. pmc Environmental DNA sequencing primers for eutardigrades and bdelloid rotifers
    Michael S Robeson
    University of Colorado, Department of Ecology and Evolutionary Biology, Ramaley N122, Campus Box 334, Boulder, CO 80309 0334, USA
    BMC Ecol 9:25. 2009
  10. pmc Soil rotifer communities are extremely diverse globally but spatially autocorrelated locally
    Michael S Robeson
    Department of Ecology and Evolutionary Biology, University of Colorado, Boulder, CO 80309, USA
    Proc Natl Acad Sci U S A 108:4406-10. 2011

Detail Information

Publications24

  1. ncbi request reprint Conservation of a dinucleotide simple sequence repeat locus in sharks
    Andrew P Martin
    Department of Environmental, Population, and Organismic Biology, University of Colorado, Boulder, CO 80309, USA
    Mol Phylogenet Evol 23:205-13. 2002
    ....
  2. ncbi request reprint Substitution rates of organelle and nuclear genes in sharks: implicating metabolic rate (again)
    A P Martin
    Department of Environmental Population and Organismic Biology, University of Colorado, Boulder 80309, USA
    Mol Biol Evol 16:996-1002. 1999
    ....
  3. ncbi request reprint Perils of paralogy: using HSP70 genes for inferring organismal phylogenies
    Andrew P Martin
    Department of EPO Biology, University of Colorado, Boulder, Colorado 80309, USA
    Syst Biol 51:570-87. 2002
    ..Our results underscore the distinction between gene and species trees and highlight an underappreciated source of discordance between gene trees and organismal phylogeny, i.e., unrecognized paralogy of sampled genes...
  4. pmc Phylogenetic approaches for describing and comparing the diversity of microbial communities
    Andrew P Martin
    Department of Environmental, Population and Organismic Biology, University of Colorado, Boulder, Colorado 80309, USA
    Appl Environ Microbiol 68:3673-82. 2002
  5. ncbi request reprint The phylogenetic placement of chondrichthyes: inferences from analysis of multiple genes and implications for comparative studies
    A Martin
    Department of EPO Biology, University of Colorado, Boulder 80309, USA
    Genetica 111:349-57. 2001
    ....
  6. ncbi request reprint Choosing among alternative trees of multigene families
    A P Martin
    Department of Environmental, Population, and Organismic Biology, University of Colorado, Boulder, Colorado 80309, USA
    Mol Phylogenet Evol 16:430-9. 2000
    ..The approach is illustrated using three gene families: BMP, EGR, and LDH...
  7. pmc Regional endemism and cryptic species revealed by molecular and morphological analysis of a widespread species of Neotropical catfish
    A P Martin
    Department of Environmental, Population and Organismic Biology, University of Colorado, Boulder 80309, USA
    Proc Biol Sci 267:1135-41. 2000
    ..Overall, the results underscore the tremendous importance of historical processes on regional biodiversity...
  8. pmc Bacterial communities of Bartonella-positive fleas: diversity and community assembly patterns
    Ryan T Jones
    Department of Ecology and Evolutionary Biology, CB334, University of Colorado Boulder, Boulder, Colorado 80309, USA
    Appl Environ Microbiol 74:1667-70. 2008
    ..DNA sequences were used to classify bacteria detected in a phylogenetic context, to explore community assembly patterns within individual fleas, and to survey diversity patterns in dominant lineages...
  9. pmc Environmental DNA sequencing primers for eutardigrades and bdelloid rotifers
    Michael S Robeson
    University of Colorado, Department of Ecology and Evolutionary Biology, Ramaley N122, Campus Box 334, Boulder, CO 80309 0334, USA
    BMC Ecol 9:25. 2009
    ..Our PCR primers, specific to the 18s small-subunit rRNA gene, were developed for both eutardigrades and bdelloid rotifers...
  10. pmc Soil rotifer communities are extremely diverse globally but spatially autocorrelated locally
    Michael S Robeson
    Department of Ecology and Evolutionary Biology, University of Colorado, Boulder, CO 80309, USA
    Proc Natl Acad Sci U S A 108:4406-10. 2011
    ..Such small species ranges, combined with their ubiquity in soils, make it increasingly clear that the biodiversity of bdelloid rotifers (and other less easily dispersed microbes) is much higher than previously thought...
  11. doi request reprint Phylogeny of hammerhead sharks (Family Sphyrnidae) inferred from mitochondrial and nuclear genes
    Douglas D Lim
    Department of Ecology and Evolutionary Biology, University of Colorado, Boulder, CO 80309, USA
    Mol Phylogenet Evol 55:572-9. 2010
    ..Moreover, the results suggest that once the cephalofoil evolved, it underwent divergent evolution in different lineages presumably in response to unique selective regimes...
  12. ncbi request reprint Microbial community succession in an unvegetated, recently deglaciated soil
    Diana R Nemergut
    INSTAAR, An Earth and Environmental Systems Institute, University of Colorado, Boulder, CO 80309, USA
    Microb Ecol 53:110-22. 2007
    ..Our results suggest that, like macrobial communities, soil microbial communities are structured by substrate age, and that they, too, undergo predictable changes through time...
  13. doi request reprint Bacterial communities of disease vectors sampled across time, space, and species
    Ryan T Jones
    Department of Ecology and Evolutionary Biology, University of Colorado, Boulder, CO, USA
    ISME J 4:223-31. 2010
    ....
  14. doi request reprint Population genetic structure of the prairie dog flea and plague vector, Oropsylla hirsuta
    R Jory Brinkerhoff
    Department of Ecology and Evolutionary Biology, University of Colorado, Boulder, CO 80309 0334, USA
    Parasitology 138:71-9. 2011
    ..Re-colonization following plague events from plague-free refugia may allow for rapid flea population expansion following plague epizootics...
  15. ncbi request reprint Testing for differentiation of microbial communities using phylogenetic methods: accounting for uncertainty of phylogenetic inference and character state mapping
    Ryan T Jones
    Department of Ecology and Evolution, University of Colorado, Boulder, CO 80309, USA
    Microb Ecol 52:408-17. 2006
    ..Accounting for phylogenetic and character mapping uncertainty provides a more conservative and robust test of covariation between phylogeny and environment when comparing microbial communities using DNA sequences...
  16. pmc Insights and inferences about integron evolution from genomic data
    Diana R Nemergut
    Institute of Arctic and Alpine Research, University of Colorado, Boulder, Colorado, USA
    BMC Genomics 9:261. 2008
    ..Here, we provide a systematic analysis of the distribution and diversity of integron intI genes and integron-containing bacteria...
  17. ncbi request reprint The rate and pattern of cladogenesis in microbes
    Andrew P Martin
    Department of Ecology and Evolutionary Biology, University of Colorado, Boulder, Colorado 80309, USA
    Evolution 58:946-55. 2004
    ....
  18. ncbi request reprint Across the great divide: genetic forensics reveals misidentification of endangered cutthroat trout populations
    Jessica L Metcalf
    Department of Ecology and Evolutionary Biology, University of Colorado, Boulder, CO 80309, USA
    Mol Ecol 16:4445-54. 2007
    ..Our results suggest greenback cutthroat trout within its native range is at a higher risk of extinction than ever before despite conservation activities spanning more than two decades...
  19. doi request reprint Hybridization dynamics between Colorado's native cutthroat trout and introduced rainbow trout
    Jessica L Metcalf
    Department of Ecology and Evolutionary Biology, N122 Ramaley Biology, University of Colorado, Boulder, CO 80309, USA
    J Hered 99:149-56. 2008
    ..Additionally, the presence of intraspecific cytonuclear associations found in both populations is concordant with current hypotheses regarding coevolution of mitochondrial and nuclear genomes...
  20. doi request reprint Do pathogens reduce genetic diversity of their hosts? Variable effects of sylvatic plague in black-tailed prairie dogs
    Loren C Sackett
    Department of Ecology and Evolutionary Biology, University of Colorado, Boulder, CO 80309, USA
    Mol Ecol 22:2441-55. 2013
    ..Furthermore, even highly virulent diseases may not eliminate individuals randomly; rather, they may selectively remove the most inbred individuals...
  21. ncbi request reprint Seasonal dynamics of previously unknown fungal lineages in tundra soils
    Christopher W Schadt
    Department of Ecology and Evolutionary Biology, University of Colorado, Boulder, CO 80309 0334, USA
    Science 301:1359-61. 2003
    ..An abundance of previously unknown fungi that are active beneath the snow substantially broadens our understanding of both the diversity and biogeochemical functioning of fungi in cold environments...
  22. ncbi request reprint Phylogeny of elasmobranchs based on LSU and SSU ribosomal RNA genes
    Christopher J Winchell
    School of Biological Sciences, Washington State University, Box 644236, Pullman, WA 99164 4236, USA
    Mol Phylogenet Evol 31:214-24. 2004
    ..In conclusion, several different molecular studies now refute the Hypnosqualea hypothesis of elasmobranch interrelationships...
  23. ncbi request reprint Using coalescent simulations to test the impact of quaternary climate cycles on divergence in an alpine plant-insect association
    Eric G DeChaine
    Department of Organismic and Evolutionary Biology, 16 Divinity Ave, Harvard University, Cambridge, Massachusetts 02138, USA
    Evolution 60:1004-13. 2006
    ..By promoting habitat expansion and mixing among alpine populations, glacial periods repeatedly reset the distributions of genetic variation in each species and inhibited continual codivergence among pairs of interacting species...
  24. ncbi request reprint Bumblebee flight distances in relation to the forage landscape
    Juliet L Osborne
    Department of Plant and Invertebrate Ecology, Rothamsted Research, Harpenden, Hertfordshire, AL5 2JQ, UK
    J Anim Ecol 77:406-15. 2008
    ..terrestris foraging was large enough to buffer against effects of forage patch and flowering crop heterogeneity, but bee species with shorter foraging ranges may experience highly variable colony success according to location...