Research Topics
| Andrew P MartinSummaryAffiliation: University of Colorado Country: USA Publications
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Detail Information
Publications
Conservation of a dinucleotide simple sequence repeat locus in sharksAndrew P Martin
Department of Environmental, Population, and Organismic Biology, University of Colorado, Boulder, CO 80309, USA
Mol Phylogenet Evol 23:205-13. 2002....- Substitution rates of organelle and nuclear genes in sharks: implicating metabolic rate (again)A P Martin
Department of Environmental Population and Organismic Biology, University of Colorado, Boulder 80309, USA
Mol Biol Evol 16:996-1002. 1999.... - Perils of paralogy: using HSP70 genes for inferring organismal phylogeniesAndrew P Martin
Department of EPO Biology, University of Colorado, Boulder, Colorado 80309, USA
Syst Biol 51:570-87. 2002..Our results underscore the distinction between gene and species trees and highlight an underappreciated source of discordance between gene trees and organismal phylogeny, i.e., unrecognized paralogy of sampled genes... 
Phylogenetic approaches for describing and comparing the diversity of microbial communitiesAndrew P Martin
Department of Environmental, Population and Organismic Biology, University of Colorado, Boulder, Colorado 80309, USA
Appl Environ Microbiol 68:3673-82. 2002- The phylogenetic placement of chondrichthyes: inferences from analysis of multiple genes and implications for comparative studiesA Martin
Department of EPO Biology, University of Colorado, Boulder 80309, USA
Genetica 111:349-57. 2001.... - Choosing among alternative trees of multigene familiesA P Martin
Department of Environmental, Population, and Organismic Biology, University of Colorado, Boulder, Colorado 80309, USA
Mol Phylogenet Evol 16:430-9. 2000..The approach is illustrated using three gene families: BMP, EGR, and LDH... - Regional endemism and cryptic species revealed by molecular and morphological analysis of a widespread species of Neotropical catfishA P Martin
Department of Environmental, Population and Organismic Biology, University of Colorado, Boulder 80309, USA
Proc Biol Sci 267:1135-41. 2000..Overall, the results underscore the tremendous importance of historical processes on regional biodiversity... - Bacterial communities of Bartonella-positive fleas: diversity and community assembly patternsRyan T Jones
Department of Ecology and Evolutionary Biology, CB334, University of Colorado Boulder, Boulder, Colorado 80309, USA
Appl Environ Microbiol 74:1667-70. 2008..DNA sequences were used to classify bacteria detected in a phylogenetic context, to explore community assembly patterns within individual fleas, and to survey diversity patterns in dominant lineages... - Environmental DNA sequencing primers for eutardigrades and bdelloid rotifersMichael S Robeson
University of Colorado, Department of Ecology and Evolutionary Biology, Ramaley N122, Campus Box 334, Boulder, CO 80309 0334, USA
BMC Ecol 9:25. 2009..Our PCR primers, specific to the 18s small-subunit rRNA gene, were developed for both eutardigrades and bdelloid rotifers... 
Phylogeny of hammerhead sharks (Family Sphyrnidae) inferred from mitochondrial and nuclear genesDouglas D Lim
Department of Ecology and Evolutionary Biology, University of Colorado, Boulder, CO 80309, USA
Mol Phylogenet Evol 55:572-9. 2010..Moreover, the results suggest that once the cephalofoil evolved, it underwent divergent evolution in different lineages presumably in response to unique selective regimes...- Microbial community succession in an unvegetated, recently deglaciated soilDiana R Nemergut
INSTAAR, An Earth and Environmental Systems Institute, University of Colorado, Boulder, CO 80309, USA
Microb Ecol 53:110-22. 2007..Our results suggest that, like macrobial communities, soil microbial communities are structured by substrate age, and that they, too, undergo predictable changes through time... - Soil rotifer communities are extremely diverse globally but spatially autocorrelated locallyMichael S Robeson
Department of Ecology and Evolutionary Biology, University of Colorado, Boulder, CO 80309, USA
Proc Natl Acad Sci U S A 108:4406-10. 2011..Such small species ranges, combined with their ubiquity in soils, make it increasingly clear that the biodiversity of bdelloid rotifers (and other less easily dispersed microbes) is much higher than previously thought... - Bacterial communities of disease vectors sampled across time, space, and speciesRyan T Jones
Department of Ecology and Evolutionary Biology, University of Colorado, Boulder, CO, USA
ISME J 4:223-31. 2010.... - Testing for differentiation of microbial communities using phylogenetic methods: accounting for uncertainty of phylogenetic inference and character state mappingRyan T Jones
Department of Ecology and Evolution, University of Colorado, Boulder, CO 80309, USA
Microb Ecol 52:408-17. 2006..Accounting for phylogenetic and character mapping uncertainty provides a more conservative and robust test of covariation between phylogeny and environment when comparing microbial communities using DNA sequences... - Population genetic structure of the prairie dog flea and plague vector, Oropsylla hirsutaR Jory Brinkerhoff
Department of Ecology and Evolutionary Biology, University of Colorado, Boulder, CO 80309 0334, USA
Parasitology 138:71-9. 2011..Re-colonization following plague events from plague-free refugia may allow for rapid flea population expansion following plague epizootics... - Insights and inferences about integron evolution from genomic dataDiana R Nemergut
Institute of Arctic and Alpine Research, University of Colorado, Boulder, Colorado, USA
BMC Genomics 9:261. 2008..Here, we provide a systematic analysis of the distribution and diversity of integron intI genes and integron-containing bacteria... - The rate and pattern of cladogenesis in microbesAndrew P Martin
Department of Ecology and Evolutionary Biology, University of Colorado, Boulder, Colorado 80309, USA
Evolution 58:946-55. 2004.... - Across the great divide: genetic forensics reveals misidentification of endangered cutthroat trout populationsJessica L Metcalf
Department of Ecology and Evolutionary Biology, University of Colorado, Boulder, CO 80309, USA
Mol Ecol 16:4445-54. 2007..Our results suggest greenback cutthroat trout within its native range is at a higher risk of extinction than ever before despite conservation activities spanning more than two decades... - Hybridization dynamics between Colorado's native cutthroat trout and introduced rainbow troutJessica L Metcalf
Department of Ecology and Evolutionary Biology, N122 Ramaley Biology, University of Colorado, Boulder, CO 80309, USA
J Hered 99:149-56. 2008..Additionally, the presence of intraspecific cytonuclear associations found in both populations is concordant with current hypotheses regarding coevolution of mitochondrial and nuclear genomes... - Seasonal dynamics of previously unknown fungal lineages in tundra soilsChristopher W Schadt
Department of Ecology and Evolutionary Biology, University of Colorado, Boulder, CO 80309-0334, USA
Science 301:1359-61. 2003..An abundance of previously unknown fungi that are active beneath the snow substantially broadens our understanding of both the diversity and biogeochemical functioning of fungi in cold environments... - Phylogeny of elasmobranchs based on LSU and SSU ribosomal RNA genesChristopher J Winchell
School of Biological Sciences, Washington State University, Box 644236, Pullman, WA 99164-4236, USA
Mol Phylogenet Evol 31:214-24. 2004..In conclusion, several different molecular studies now refute the Hypnosqualea hypothesis of elasmobranch interrelationships... - Bumblebee flight distances in relation to the forage landscapeJuliet L Osborne
Department of Plant and Invertebrate Ecology, Rothamsted Research, Harpenden, Hertfordshire, AL5 2JQ, UK
J Anim Ecol 77:406-15. 2008..terrestris foraging was large enough to buffer against effects of forage patch and flowering crop heterogeneity, but bee species with shorter foraging ranges may experience highly variable colony success according to location... - Using coalescent simulations to test the impact of quaternary climate cycles on divergence in an alpine plant-insect associationEric G DeChaine
Department of Organismic and Evolutionary Biology, 16 Divinity Ave, Harvard University, Cambridge, Massachusetts 02138, USA
Evolution 60:1004-13. 2006..By promoting habitat expansion and mixing among alpine populations, glacial periods repeatedly reset the distributions of genetic variation in each species and inhibited continual codivergence among pairs of interacting species...