Manuel E Lladser

Summary

Affiliation: University of Colorado
Country: USA

Publications

  1. ncbi request reprint Approximation of sojourn-times via maximal couplings: motif frequency distributions
    Manuel E Lladser
    Department of Applied Mathematics, University of Colorado, Boulder, CO, 80309 0526, USA
    J Math Biol 69:147-82. 2014
  2. pmc Estimation of distribution overlap of urn models
    Jerrad Hampton
    Department of Applied Mathematics, University of Colorado, Boulder, Colorado, USA
    PLoS ONE 7:e42368. 2012
  3. ncbi request reprint Multiple pattern matching: a Markov chain approach
    Manuel E Lladser
    Department of Applied Mathematics, University of Colorado at Boulder, 526 UCB, Boulder, CO 80309 0526, USA
    J Math Biol 56:51-92. 2008
  4. pmc Extrapolation of urn models via poissonization: accurate measurements of the microbial unknown
    Manuel E Lladser
    Department of Applied Mathematics, University of Colorado, Boulder, Colorado, United States of America
    PLoS ONE 6:e21105. 2011
  5. pmc Natural and artificial RNAs occupy the same restricted region of sequence space
    Ryan Kennedy
    Department of Computer Science, University of Colorado, Boulder, Colorado 80309, USA
    RNA 16:280-9. 2010
  6. pmc Comparison of methods for estimating the nucleotide substitution matrix
    Maribeth Oscamou
    Department of Applied Mathematics, University of Colorado, Boulder, CO, USA
    BMC Bioinformatics 9:511. 2008
  7. ncbi request reprint Information, probability, and the abundance of the simplest RNA active sites
    Ryan Kennedy
    Department of Computer Science, University of Colorado at Boulder, 430 UCB, Boulder, CO 80309 0430, USA
    Front Biosci 13:6060-71. 2008

Detail Information

Publications7

  1. ncbi request reprint Approximation of sojourn-times via maximal couplings: motif frequency distributions
    Manuel E Lladser
    Department of Applied Mathematics, University of Colorado, Boulder, CO, 80309 0526, USA
    J Math Biol 69:147-82. 2014
    ..elegans. Mathematical properties of the proposed ergodicity coefficients and connections with additive functionals of homogeneous Markov chains as well as ergodicity of non-homogeneous Markov chains are also explored. ..
  2. pmc Estimation of distribution overlap of urn models
    Jerrad Hampton
    Department of Applied Mathematics, University of Colorado, Boulder, Colorado, USA
    PLoS ONE 7:e42368. 2012
    ..The dissimilarity of these pools is then related to the probability of finding binding site solutions in one pool that are absent in the other...
  3. ncbi request reprint Multiple pattern matching: a Markov chain approach
    Manuel E Lladser
    Department of Applied Mathematics, University of Colorado at Boulder, 526 UCB, Boulder, CO 80309 0526, USA
    J Math Biol 56:51-92. 2008
    ..The applications we present focus on the concept of synchronization of automata, as well as automata used to search for a finite number of keywords (including sets of patterns generated according to base pairing rules) in a general text...
  4. pmc Extrapolation of urn models via poissonization: accurate measurements of the microbial unknown
    Manuel E Lladser
    Department of Applied Mathematics, University of Colorado, Boulder, Colorado, United States of America
    PLoS ONE 6:e21105. 2011
    ....
  5. pmc Natural and artificial RNAs occupy the same restricted region of sequence space
    Ryan Kennedy
    Department of Computer Science, University of Colorado, Boulder, Colorado 80309, USA
    RNA 16:280-9. 2010
    ..These universal evolved sequence features are therefore intrinsic in RNA molecules that bind small-molecule targets or catalyze reactions...
  6. pmc Comparison of methods for estimating the nucleotide substitution matrix
    Maribeth Oscamou
    Department of Applied Mathematics, University of Colorado, Boulder, CO, USA
    BMC Bioinformatics 9:511. 2008
    ..However, the speed and accuracy of these methods has not been compared...
  7. ncbi request reprint Information, probability, and the abundance of the simplest RNA active sites
    Ryan Kennedy
    Department of Computer Science, University of Colorado at Boulder, 430 UCB, Boulder, CO 80309 0430, USA
    Front Biosci 13:6060-71. 2008
    ..We show that all of the methods that take modularity into account provide far more accurate estimates of this probability than the informational methods, and that fast approximate methods are suitable for a wide range of RNA motifs...