Muhammad G Kibriya

Summary

Affiliation: University of Chicago
Country: USA

Publications

  1. doi request reprint A pilot genome-wide association study of early-onset breast cancer
    Muhammad G Kibriya
    Department of Health Studies, The University of Chicago, 5841 S Maryland Avenue, MC 2007, Chicago, IL 60637, USA
    Breast Cancer Res Treat 114:463-77. 2009
  2. pmc A genome-wide DNA methylation study in colorectal carcinoma
    Muhammad G Kibriya
    Department of Health Studies, The University of Chicago, Chicago, IL 60637, USA
    BMC Med Genomics 4:50. 2011
  3. pmc Changes in gene expression profiles in response to selenium supplementation among individuals with arsenic-induced pre-malignant skin lesions
    Muhammad G Kibriya
    Department of Epidemiology, Mailman School of Public Health, Columbia University, USA
    Toxicol Lett 169:162-76. 2007
  4. pmc Interpretation of genome-wide infinium methylation data from ligated DNA in formalin-fixed, paraffin-embedded paired tumor and normal tissue
    Farzana Jasmine
    Department of Health Studies, The University of Chicago, Chicago, IL 60637, USA
    BMC Res Notes 5:117. 2012
  5. ncbi request reprint Arsenic metabolism, genetic susceptibility, and risk of premalignant skin lesions in Bangladesh
    Habibul Ahsan
    Departments of Epidemiology, Columbia University, USA
    Cancer Epidemiol Biomarkers Prev 16:1270-8. 2007
  6. pmc A genome-wide study of cytogenetic changes in colorectal cancer using SNP microarrays: opportunities for future personalized treatment
    Farzana Jasmine
    Department of Health Studies, The University of Chicago, Chicago, Illinois, United States of America
    PLoS ONE 7:e31968. 2012
  7. doi request reprint Effect of selenium and vitamin e supplementation on plasma protein carbonyl levels in patients with arsenic-related skin lesions
    Julie Mahata
    Department of Environmental Health Sciences, Mailman School of Public Health, Columbia University, New York, NY, USA
    Nutr Cancer 60:55-60. 2008
  8. pmc Genome-wide association study identifies chromosome 10q24.32 variants associated with arsenic metabolism and toxicity phenotypes in Bangladesh
    Brandon L Pierce
    Department of Health Studies, The University of Chicago, Chicago, Illinois, United States of America
    PLoS Genet 8:e1002522. 2012
  9. ncbi request reprint Gene expression profiles in peripheral lymphocytes by arsenic exposure and skin lesion status in a Bangladeshi population
    Maria Argos
    Department of Epidemiology, Mailman School of Public Health, Columbia University Medical Center, New York, NY 10032, USA
    Cancer Epidemiol Biomarkers Prev 15:1367-75. 2006
  10. ncbi request reprint A CYP19 (aromatase) polymorphism is associated with increased premenopausal breast cancer risk
    Kathryn E Talbott
    Department of Epidemiology, Mailman School of Public Health, Columbia University, New York, NY, 10032, USA
    Breast Cancer Res Treat 111:481-7. 2008

Detail Information

Publications22

  1. doi request reprint A pilot genome-wide association study of early-onset breast cancer
    Muhammad G Kibriya
    Department of Health Studies, The University of Chicago, 5841 S Maryland Avenue, MC 2007, Chicago, IL 60637, USA
    Breast Cancer Res Treat 114:463-77. 2009
    ..Nevertheless, without systematic replication, findings from this pilot study, especially the associations of breast cancer in relation to specific SNPs, should be interpreted with great caution...
  2. pmc A genome-wide DNA methylation study in colorectal carcinoma
    Muhammad G Kibriya
    Department of Health Studies, The University of Chicago, Chicago, IL 60637, USA
    BMC Med Genomics 4:50. 2011
    ..We performed a genome-wide scan of 27,578 CpG loci covering 14,475 genes to identify differentially methylated loci (DML) in colorectal carcinoma (CRC)...
  3. pmc Changes in gene expression profiles in response to selenium supplementation among individuals with arsenic-induced pre-malignant skin lesions
    Muhammad G Kibriya
    Department of Epidemiology, Mailman School of Public Health, Columbia University, USA
    Toxicol Lett 169:162-76. 2007
    ..Additionally, this study suggests that long-term selenium supplementation may revert some of the gene expression changes presumably induced by chronic As exposure in individuals with pre-malignant skin lesions...
  4. pmc Interpretation of genome-wide infinium methylation data from ligated DNA in formalin-fixed, paraffin-embedded paired tumor and normal tissue
    Farzana Jasmine
    Department of Health Studies, The University of Chicago, Chicago, IL 60637, USA
    BMC Res Notes 5:117. 2012
    ..We report locus-specific correlation and concordance of tumor-specific differentially methylated loci (DML), both of which were not previously assessed...
  5. ncbi request reprint Arsenic metabolism, genetic susceptibility, and risk of premalignant skin lesions in Bangladesh
    Habibul Ahsan
    Departments of Epidemiology, Columbia University, USA
    Cancer Epidemiol Biomarkers Prev 16:1270-8. 2007
    ....
  6. pmc A genome-wide study of cytogenetic changes in colorectal cancer using SNP microarrays: opportunities for future personalized treatment
    Farzana Jasmine
    Department of Health Studies, The University of Chicago, Chicago, Illinois, United States of America
    PLoS ONE 7:e31968. 2012
    ..Our study shows the application of high density SNP arrays for cytogenetic study in CRC and its potential utility for personalized treatment...
  7. doi request reprint Effect of selenium and vitamin e supplementation on plasma protein carbonyl levels in patients with arsenic-related skin lesions
    Julie Mahata
    Department of Environmental Health Sciences, Mailman School of Public Health, Columbia University, New York, NY, USA
    Nutr Cancer 60:55-60. 2008
    ....
  8. pmc Genome-wide association study identifies chromosome 10q24.32 variants associated with arsenic metabolism and toxicity phenotypes in Bangladesh
    Brandon L Pierce
    Department of Health Studies, The University of Chicago, Chicago, Illinois, United States of America
    PLoS Genet 8:e1002522. 2012
    ..These results have potential translational implications for the prevention and treatment of arsenic-associated toxicities worldwide...
  9. ncbi request reprint Gene expression profiles in peripheral lymphocytes by arsenic exposure and skin lesion status in a Bangladeshi population
    Maria Argos
    Department of Epidemiology, Mailman School of Public Health, Columbia University Medical Center, New York, NY 10032, USA
    Cancer Epidemiol Biomarkers Prev 15:1367-75. 2006
    ..Genes identified from this analysis may provide insights into the underlying processes of arsenic-induced disease and represent potential targets for chemoprevention studies to reduce arsenic-induced skin cancer in this population...
  10. ncbi request reprint A CYP19 (aromatase) polymorphism is associated with increased premenopausal breast cancer risk
    Kathryn E Talbott
    Department of Epidemiology, Mailman School of Public Health, Columbia University, New York, NY, 10032, USA
    Breast Cancer Res Treat 111:481-7. 2008
    ..The finding supports the potential role of variation in estrogen biosynthesis genes in premenopausal breast cancer risk...
  11. doi request reprint Genome-wide association study of smoking behaviours among Bangladeshi adults
    Maria Argos
    Department of Health Studies, The University of Chicago, Chicago, Illinois, USA
    J Med Genet 51:327-33. 2014
    ..We performed a genome-wide association study (GWAS) of tobacco smoking behaviour among a population-based sample of 5354 (2035 ever smokers and 3319 never smokers) men and women in Bangladesh...
  12. doi request reprint Genomewide scan for loss of heterozygosity and chromosomal amplification in breast carcinoma using single-nucleotide polymorphism arrays
    Maria Argos
    Department of Health Studies, University of Chicago, 5841 S Maryland Avenue, MC 2007, Chicago, IL 60637, USA
    Cancer Genet Cytogenet 182:69-74. 2008
    ..The present study demonstrates a feasible methodological approach for the assessment of LOH and copy number changes...
  13. pmc Whole-genome amplification enables accurate genotyping for microarray-based high-density single nucleotide polymorphism array
    Farzana Jasmine
    Department of Health Studies, The University of Chicago, 5841 South Maryland Avenue, MC 2007, Chicago, IL 60637, USA
    Cancer Epidemiol Biomarkers Prev 17:3499-508. 2008
    ..29%. In conclusion, our study confirms that high-density oligonucleotide array-based genotyping can yield reproducible data and MDA-WGA DNA products can be effectively used for genome-wide SNP genotyping analysis...
  14. ncbi request reprint A randomized, double-blind placebo-controlled trial evaluating the effects of vitamin E and selenium on arsenic-induced skin lesions in Bangladesh
    Wendy J Verret
    Department of Epidemiology, Mailman School of Public Health, Columbia University, New York, New York 10032, USA
    J Occup Environ Med 47:1026-35. 2005
    ..We sought to determine whether supplementation of vitamin E (alpha-tocopherol), selenium (L-selenomethionine), or their combination improves arsenical skin lesions...
  15. ncbi request reprint Variants in estrogen metabolism and biosynthesis genes and urinary estrogen metabolites in women with a family history of breast cancer
    Heather Greenlee
    Department of Epidemiology, Mailman School of Public Health, Columbia University, 722 West 168th Street, 7th Floor, New York, NY 10032, USA
    Breast Cancer Res Treat 102:111-7. 2007
    ....
  16. pmc Analyses and interpretation of whole-genome gene expression from formalin-fixed paraffin-embedded tissue: an illustration with breast cancer tissues
    Muhammad G Kibriya
    Department of Health Studies, The University of Chicago, 5841 S, Maryland Avenue, MC 2007, Chicago, IL 60637, USA
    BMC Genomics 11:622. 2010
    ..We used a whole genome DASL assay (addressing 18,391 genes) on a total of 72 samples from paired breast tumor and surrounding healthy tissues from both FF and FFPE samples...
  17. ncbi request reprint A family-based genetic association study of variants in estrogen-metabolism genes COMT and CYP1B1 and breast cancer risk
    Habibul Ahsan
    Department of Epidemiology, Mailman School of Public Health, Columbia University, New York, NY 10032, USA
    Breast Cancer Res Treat 85:121-31. 2004
    ....
  18. doi request reprint Baseline comorbidities in a skin cancer prevention trial in Bangladesh
    Maria Argos
    Department of Health Studies, The University of Chicago, Chicago, IL 60637, USA
    Eur J Clin Invest 43:579-88. 2013
    ..This study reports on the design, methods and baseline analyses from the Bangladesh Vitamin E and Selenium Trial (BEST), a population-based chemoprevention study conducted among adults in Bangladesh with visible arsenic toxicity...
  19. ncbi request reprint Susceptibility to arsenic-induced hyperkeratosis and oxidative stress genes myeloperoxidase and catalase
    Habibul Ahsan
    Department of Epidemiology, Mailman School of Public Health, Columfbia University, Room 720G, 722 West 168th Street, New York, NY 10032, USA
    Cancer Lett 201:57-65. 2003
    ..Our findings, although based on small numbers, suggest that the oxidative stress genes MPO and CAT may influence the risk of arsenic-induced premalignant hyperkeratotic skin lesions...
  20. doi request reprint Environmental mutagens induced transversions but not transitions in regulatory region of mitochondrial DNA
    Michael A Partridge
    Center for Radiological Research, Columbia University, New York, NY 10032, USA
    J Toxicol Environ Health A 72:301-4. 2009
    ..Data suggest that only a change in the number of rare transversions would be indicative of an increase in point mutations in mtDNA after exposure to mutagens...
  21. pmc Genome-wide DNA methylation profiles in hepatocellular carcinoma
    Jing Shen
    Department of Environmental Health Sciences, Columbia University, New York, NY 10032, USA
    Hepatology 55:1799-808. 2012
    ..At least one of these genes was hypermethylated in 87% of the cases, suggesting that measurement of DNA methylation in plasma samples is feasible...
  22. pmc Association between arsenic exposure from drinking water and plasma levels of soluble cell adhesion molecules
    Yu Chen
    Departments of Environmental Medicine and Medicine, and New York University Cancer Institute, New York University School of Medicine, New York, New York 10016, USA
    Environ Health Perspect 115:1415-20. 2007
    ..Epidemiologic studies of cardiovascular disease risk factors and appropriate biomarkers in populations exposed to a wide range of arsenic levels are a public health research priority...