Sunduz Keles

Summary

Affiliation: University of California
Country: USA

Publications

  1. ncbi request reprint Regulatory motif finding by logic regression
    Sunduz Keles
    Division of Biostatistics, University of California, Berkeley, CA 94720, USA
    Bioinformatics 20:2799-811. 2004
  2. pmc Transcription of histone gene cluster by differential core-promoter factors
    Yoh Isogai
    Department of Molecular and Cell Biology, University of California at Berkeley, Berkeley, California 94720, USA
    Genes Dev 21:2936-49. 2007
  3. ncbi request reprint Identification of regulatory elements using a feature selection method
    Sunduz Keles
    Division of Biostatistics, U of California, Berkeley, CA 94720, USA
    Bioinformatics 18:1167-75. 2002
  4. ncbi request reprint Supervised detection of conserved motifs in DNA sequences with cosmo
    Oliver Bembom
    Division of Biostatistics, University of California, Berkeley, USA
    Stat Appl Genet Mol Biol 6:Article8. 2007
  5. ncbi request reprint Exploratory and confirmatory gene expression profiling of mac1Delta
    Jeane Maria De Freitas
    Department of Nutritional Sciences and Toxicology, University of California, Berkeley, California 94720, USA
    J Biol Chem 279:4450-8. 2004
  6. pmc Novel TRF1/BRF target genes revealed by genome-wide analysis of Drosophila Pol III transcription
    Yoh Isogai
    Department of Molecular and Cell Biology, University of California, Berkeley, CA 94720, USA
    EMBO J 26:79-89. 2007

Collaborators

Detail Information

Publications6

  1. ncbi request reprint Regulatory motif finding by logic regression
    Sunduz Keles
    Division of Biostatistics, University of California, Berkeley, CA 94720, USA
    Bioinformatics 20:2799-811. 2004
    ....
  2. pmc Transcription of histone gene cluster by differential core-promoter factors
    Yoh Isogai
    Department of Molecular and Cell Biology, University of California at Berkeley, Berkeley, California 94720, USA
    Genes Dev 21:2936-49. 2007
    ..Our studies establish that TRF2 promoter recognition complexes play a significantly more central role in governing metazoan transcription than previously appreciated...
  3. ncbi request reprint Identification of regulatory elements using a feature selection method
    Sunduz Keles
    Division of Biostatistics, U of California, Berkeley, CA 94720, USA
    Bioinformatics 18:1167-75. 2002
    ..We apply this method to a publicly available dataset of the yeast Saccharomyces cerevisiae, focussing on the 800 basepairs immediately upstream of each gene's translation start site (the upstream control region (UCR))...
  4. ncbi request reprint Supervised detection of conserved motifs in DNA sequences with cosmo
    Oliver Bembom
    Division of Biostatistics, University of California, Berkeley, USA
    Stat Appl Genet Mol Biol 6:Article8. 2007
    ..The algorithm has been implemented in the form of a stand-alone C program as well as a web application that can be accessed at http://cosmoweb.berkeley.edu. An R package is available through Bioconductor (http://bioconductor.org)...
  5. ncbi request reprint Exploratory and confirmatory gene expression profiling of mac1Delta
    Jeane Maria De Freitas
    Department of Nutritional Sciences and Toxicology, University of California, Berkeley, California 94720, USA
    J Biol Chem 279:4450-8. 2004
    ..New or additional support for a role in copper and iron homeostasis is provided in this study for the gene products of AKR1, MRS4, PCA1, SSU1, TIS11, YBR047W, YHL035C, YHR045W, YLR047C, YLR126C, and YTP1...
  6. pmc Novel TRF1/BRF target genes revealed by genome-wide analysis of Drosophila Pol III transcription
    Yoh Isogai
    Department of Molecular and Cell Biology, University of California, Berkeley, CA 94720, USA
    EMBO J 26:79-89. 2007
    ....