Kirk D Jones

Summary

Affiliation: University of California
Country: USA

Publications

  1. doi request reprint Histopathologic approach to the surgical lung biopsy in interstitial lung disease
    Kirk D Jones
    Department of Pathology, University of California San Francisco, San Francisco, CA 94143 0102, USA
    Clin Chest Med 33:27-40. 2012
  2. doi request reprint An update on lung cancer staging
    Kirk D Jones
    Department of Anatomic Pathology, University of California, San Francisco, 94143, USA
    Adv Anat Pathol 17:33-7. 2010
  3. pmc Association of large-airway lymphocytic bronchitis with bronchiolitis obliterans syndrome
    John R Greenland
    Department of Medicine, University of California at San Francisco, San Francisco, CA 94121, USA
    Am J Respir Crit Care Med 187:417-23. 2013
  4. doi request reprint A multidimensional index and staging system for idiopathic pulmonary fibrosis
    Brett Ley
    Department of Medicine, University of California, San Francisco, 505 Parnassus Avenue, Box 0111, San Francisco, CA 94143, USA
    Ann Intern Med 156:684-91. 2012
  5. pmc Cleaved cytokeratin-18 is a mechanistically informative biomarker in idiopathic pulmonary fibrosis
    Seung Ick Cha
    Department of Medicine, University of California, San Francisco School of Medicine, San Francisco, CA 94143 0111, USA
    Respir Res 13:105. 2012
  6. doi request reprint Rapidly progressive pulmonary venoocclusive disease in young women taking oral contraceptives
    Anatoly Urisman
    Department of Pathology, University of California San Francisco, San Francisco, CA 94143 0102, USA
    J Heart Lung Transplant 31:1031-6. 2012
  7. pmc Prevalence and clinical significance of circulating autoantibodies in idiopathic pulmonary fibrosis
    Joyce S Lee
    Department of Medicine at University of California, San Francisco, 505 Parnassus Avenue, Box 0111, San Francisco, CA 94143, USA
    Respir Med 107:249-55. 2013
  8. pmc Activated Notch1 induces lung adenomas in mice and cooperates with Myc in the generation of lung adenocarcinoma
    Thaddeus D Allen
    G W Hooper Research Foundation, University of California, San Francisco, San Francisco, California 94143 0552, USA
    Cancer Res 71:6010-8. 2011
  9. pmc Gastroesophageal reflux therapy is associated with longer survival in patients with idiopathic pulmonary fibrosis
    Joyce S Lee
    Department of Medicine, University of California San Francisco, USA
    Am J Respir Crit Care Med 184:1390-4. 2011
  10. ncbi request reprint Pathogenesis of idiopathic pulmonary fibrosis
    Paul J Wolters
    Department of Medicine, School of Medicine, University of California, San Francisco, California 94143 email
    Annu Rev Pathol 9:157-79. 2014

Detail Information

Publications33

  1. doi request reprint Histopathologic approach to the surgical lung biopsy in interstitial lung disease
    Kirk D Jones
    Department of Pathology, University of California San Francisco, San Francisco, CA 94143 0102, USA
    Clin Chest Med 33:27-40. 2012
    ..The topic of ILD or diffuse infiltrative lung disease covers several hundred entities. This article is meant to be a launching point in the clinician's approach to the histologic evaluation of lung disease...
  2. doi request reprint An update on lung cancer staging
    Kirk D Jones
    Department of Anatomic Pathology, University of California, San Francisco, 94143, USA
    Adv Anat Pathol 17:33-7. 2010
    ....
  3. pmc Association of large-airway lymphocytic bronchitis with bronchiolitis obliterans syndrome
    John R Greenland
    Department of Medicine, University of California at San Francisco, San Francisco, CA 94121, USA
    Am J Respir Crit Care Med 187:417-23. 2013
    ..Although acute rejection and lymphocytic bronchiolitis have been identified as risk factors for the development of BOS, it is unclear whether large-airway lymphocytic inflammation conveys the same risk...
  4. doi request reprint A multidimensional index and staging system for idiopathic pulmonary fibrosis
    Brett Ley
    Department of Medicine, University of California, San Francisco, 505 Parnassus Avenue, Box 0111, San Francisco, CA 94143, USA
    Ann Intern Med 156:684-91. 2012
    ..Idiopathic pulmonary fibrosis (IPF) is a progressive fibrotic lung disease with an overall poor prognosis. A simple-to-use staging system for IPF may improve prognostication, help guide management, and facilitate research...
  5. pmc Cleaved cytokeratin-18 is a mechanistically informative biomarker in idiopathic pulmonary fibrosis
    Seung Ick Cha
    Department of Medicine, University of California, San Francisco School of Medicine, San Francisco, CA 94143 0111, USA
    Respir Res 13:105. 2012
    ....
  6. doi request reprint Rapidly progressive pulmonary venoocclusive disease in young women taking oral contraceptives
    Anatoly Urisman
    Department of Pathology, University of California San Francisco, San Francisco, CA 94143 0102, USA
    J Heart Lung Transplant 31:1031-6. 2012
    ..The temporal sequence in these 2 patients suggests the thrombogenic action of OCs may contribute to the development of PVOD, with or without underlying connective tissue disease...
  7. pmc Prevalence and clinical significance of circulating autoantibodies in idiopathic pulmonary fibrosis
    Joyce S Lee
    Department of Medicine at University of California, San Francisco, 505 Parnassus Avenue, Box 0111, San Francisco, CA 94143, USA
    Respir Med 107:249-55. 2013
    ..The objective of this study was to determine the frequency and clinical significance of circulating autoantibodies in idiopathic pulmonary fibrosis...
  8. pmc Activated Notch1 induces lung adenomas in mice and cooperates with Myc in the generation of lung adenocarcinoma
    Thaddeus D Allen
    G W Hooper Research Foundation, University of California, San Francisco, San Francisco, California 94143 0552, USA
    Cancer Res 71:6010-8. 2011
    ..These tumor models should be valuable for exploring the role of activated Notch1 in the genesis of NSCLC and for testing therapies targeting either activated Notch1 or its downstream effectors...
  9. pmc Gastroesophageal reflux therapy is associated with longer survival in patients with idiopathic pulmonary fibrosis
    Joyce S Lee
    Department of Medicine, University of California San Francisco, USA
    Am J Respir Crit Care Med 184:1390-4. 2011
    ..Gastroesophageal reflux (GER) is highly prevalent in patients with idiopathic pulmonary fibrosis (IPF). Chronic microaspiration secondary to GER may play a role in the pathogenesis and natural history of IPF...
  10. ncbi request reprint Pathogenesis of idiopathic pulmonary fibrosis
    Paul J Wolters
    Department of Medicine, School of Medicine, University of California, San Francisco, California 94143 email
    Annu Rev Pathol 9:157-79. 2014
    ..We then discuss the pathologic changes within IPF fibroblasts and the extracellular matrix, and we conclude with a summary of how these profibrotic pathways may be interrelated. ..
  11. pmc A practical molecular assay to predict survival in resected non-squamous, non-small-cell lung cancer: development and international validation studies
    Johannes R Kratz
    University of California, San Francisco, CA 94143 1724, USA
    Lancet 379:823-32. 2012
    ..We aimed to develop and validate a practical, reliable assay that improves risk stratification compared with conventional staging...
  12. ncbi request reprint Low tidal volume reduces epithelial and endothelial injury in acid-injured rat lungs
    James A Frank
    Cardiovascular Research Institute and the Department of Medicine, University of California, San Francisco, San Francisco, California 94143 0130, USA
    Am J Respir Crit Care Med 165:242-9. 2002
    ..The additional decrease in pulmonary edema with a tidal volume of 3 ml/kg is partly accounted for by greater protection of the alveolar epithelium...
  13. ncbi request reprint Pulmonary interstitial emphysema in adults: a clinicopathologic study of 53 lung explants
    Sara M Barcia
    Departments of Pathology Surgery, University of California San Francisco, San Francisco, CA
    Am J Surg Pathol 38:339-45. 2014
    ..A correlation was seen between prior ventilation and/or biopsy. These findings may indicate that PIE is a result of medical intervention; however, in the remainder of cases the disease process itself may have been a contributing factor. ..
  14. pmc Transcript signatures of lymphocytic bronchitis in lung allograft biopsy specimens
    Xiang Xu
    Department of Medicine University of California at San Francisco, San Francisco, 94143, USA
    J Heart Lung Transplant 24:1055-66. 2005
    ..Early detection is hindered by inadequate tests and an incomplete understanding of the molecular events preceding or accompanying graft deterioration...
  15. pmc Plasma biomarker profiles in acute exacerbation of idiopathic pulmonary fibrosis
    Harold R Collard
    Department of Medicine, University of California San Francisco, San Francisco, California, USA
    Am J Physiol Lung Cell Mol Physiol 299:L3-7. 2010
    ..Furthermore, they suggest that acute exacerbation of IPF has a distinct plasma biomarker profile from that of acute lung injury...
  16. pmc Idiopathic nonspecific interstitial pneumonia: lung manifestation of undifferentiated connective tissue disease?
    Brent W Kinder
    Department of Medicine, University of California School of Medicine, San Francisco, California, USA
    Am J Respir Crit Care Med 176:691-7. 2007
    ....
  17. pmc MicroRNA-494 within an oncogenic microRNA megacluster regulates G1/S transition in liver tumorigenesis through suppression of mutated in colorectal cancer
    Lionel Lim
    Department of Cell and Tissue Biology, University of California San Francisco, San Francisco, CA Department of Medicine, University of California San Francisco, San Francisco, CA
    Hepatology 59:202-15. 2014
    ..Conclusion: Our findings identify a new therapeutic target (miR-494) for the treatment of HCC...
  18. doi request reprint Whence lepidic?: the history of a Canadian neologism
    Kirk D Jones
    From the Department of Pathology, University of California, San Francisco
    Arch Pathol Lab Med 137:1822-4. 2013
    ..This historical perspective traces the history of the term lepidic from its origins at McGill University in Montreal, Canada, through its uses in English pathologic descriptions, to its current state in pulmonary pathology. ..
  19. ncbi request reprint Data set for reporting of lung carcinomas: recommendations from International Collaboration on Cancer Reporting
    Kirk D Jones
    Department of Pathology, University of California San Francisco, San Francisco, USA
    Arch Pathol Lab Med 137:1054-62. 2013
    ..The resultant standardization of cancer reporting would be expected to benefit not only those countries directly involved in the collaboration but also others not in a position to develop their own data sets...
  20. ncbi request reprint Fatal diffuse alveolar damage in two lung transplant patients treated with cetuximab
    Lorriana E Leard
    Division of Pulmonary and Critical Care Medicine, University of California at San Francisco, San Francisco, California 94143 0111, USA
    J Heart Lung Transplant 26:1340-4. 2007
    ..Both patients died shortly after initiation of cetuximab due to diffuse alveolar damage, suggesting that EGFR inhibitors should be used with extreme caution in lung transplant recipients...
  21. doi request reprint Cough predicts prognosis in idiopathic pulmonary fibrosis
    Christopher J Ryerson
    Department of Medicine, University of California San Francisco, San Francisco, California 94143, USA
    Respirology 16:969-75. 2011
    ..The clinical associations and prognostic value of cough in IPF have not been adequately described. The objective of this study was to describe the characteristics and prognostic value of cough in IPF...
  22. pmc Interaction between MYC and MCL1 in the genesis and outcome of non-small-cell lung cancer
    Thaddeus D Allen
    G W Hooper Research Foundation, University of California, San Francisco, USA
    Cancer Res 71:2212-21. 2011
    ..Our findings therefore produce a convergence of mouse and human results that explain how MCL1 can block an important negative consequence of MYC overexpression in both experimental models and clinical cases of NSCLC...
  23. doi request reprint The diagnosis and management of intradiaphragmatic extralobar pulmonary sequestrations: a report of 4 cases
    Amar Nijagal
    Department of Surgery, University of California, San Francisco, CA 94143 0570, USA
    J Pediatr Surg 47:1501-5. 2012
    ..We report the largest series of patients with IDEPS and describe the diagnostic and operative challenges associated with this condition...
  24. ncbi request reprint Pulmonary pathology in connective tissue disease
    Anatoly Urisman
    Department of Pathology, University of California San Francisco, San Francisco, California
    Semin Respir Crit Care Med 35:201-12. 2014
    ..Acquired autoimmune connective tissue diseases will be covered in this review, while lung involvement in vasculitides, heritable connective tissue disorders, and drug-induced CTD-like conditions will not be discussed. ..
  25. pmc Pulmonary interstitial glycogenosis: an unrecognized etiology of persistent pulmonary hypertension of the newborn in congenital heart disease?
    Monique R Radman
    Department of Pediatrics, University of California, 513 Parnassus Avenue, Box 1346, San Francisco, CA 94143 1346, USA
    Pediatr Cardiol 34:1254-7. 2013
    ..Pulmonary interstitial glycogenosis (PIG) arises from a developmental disorder of the pulmonary mesenchyme and presents clinically with reversible neonatal respiratory distress and/or persistent pulmonary hypertension of the newborn (PPHN)...
  26. pmc Evaluation of diffuse liver steatosis by ultrasound, computed tomography, and magnetic resonance imaging: which modality is best?
    Aliya Qayyum
    Department of Radiology, University of California San Francisco, 505 Parnassus Avenue, San Francisco, CA 94143 0628, USA
    Clin Imaging 33:110-5. 2009
    ..To compare ultrasound, computed tomography (CT), and magnetic resonance imaging (MRI) determination of diffuse liver steatosis...
  27. pmc Identification of an autoantigen demonstrates a link between interstitial lung disease and a defect in central tolerance
    Anthony K Shum
    1Diabetes Center, University of California, San Francisco, CA 94143, USA
    Sci Transl Med 1:9ra20. 2009
    ....
  28. ncbi request reprint c-Kit immunophenotyping and metalloproteinase expression profiles of mast cells in interstitial lung diseases
    Samuel T Edwards
    Cardiovascular Research Institute, University of California, San Francisco, California 94143 0911, USA
    J Pathol 206:279-90. 2005
    ..We conclude that ILD microenvironments induce unique c-Kit receptor and metalloproteinase mast cell phenotypes...
  29. ncbi request reprint Death from donor-transmitted malignancy despite emergency liver retransplantation
    Gerald S Lipshutz
    Division of Transplantation, Department of Surgery, University of California, San Francisco, CA 94143, USA
    Liver Transpl 9:1102-7. 2003
    ..This case of donor-transmitted malignancy underscores the need for vigilance by the procuring surgeon in identifying potential malignancy during organ retrieval and use of a full autopsy on selected donors after organ procurement...
  30. ncbi request reprint Lung pathology in patients with congenital diaphragmatic hernia treated with fetal surgical intervention, including tracheal occlusion
    Amy E Heerema
    Department of Pathology, University of California, San Francisco, 300 Parnassus Avenue, Box 0506, San Francisco, CA 94143 0506, USA
    Pediatr Dev Pathol 6:536-46. 2003
    ..The lung remains abnormal with low radial alveolar counts and increased alveolar size. Tracheal occlusion did not prevent development of lung pathology associated with pulmonary hypoplasia...
  31. pmc Role of cyclin D1 as a mediator of c-Met- and beta-catenin-induced hepatocarcinogenesis
    Mohini A Patil
    Department of Biopharmaceutical Sciences, University of California San Francisco, 513 Parnassus Avenue, San Francisco, CA 94143 0446, USA
    Cancer Res 69:253-61. 2009
    ..Moreover, our data suggest that CCND1 expression is not essential for liver tumor development induced by c-Met and beta-catenin...
  32. ncbi request reprint Lymphangioleiomyomatosis and SZ alpha(1)-antitrypsin disease: a unique combination?
    Andrew L Chan
    University of California, Davis Medical Center, Sacramento, CA, USA
    Chest 124:763-5. 2003
    ..The possible mechanisms of interaction resulting from both disease processes are discussed...
  33. pmc Distinct pathways of genomic progression to benign and malignant tumors of the liver
    Aaron D Tward
    G W Hooper Foundation and Department of Microbiology and Immunology, University of California, San Francisco, CA 94143, USA
    Proc Natl Acad Sci U S A 104:14771-6. 2007
    ....