Research Topics
| Mattias JakobssonSummaryAffiliation: University of Michigan Country: USA Publications
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Detail Information
Publications
The evolutionary history of the common chloroplast genome of Arabidopsis thaliana and A. suecicaM Jakobsson
Department of Cell and Organism Biology, Genetics, Lund University, Lund, Sweden
J Evol Biol 20:104-21. 2007..thaliana that come primarily from central Europe. Selective neutrality of the cp genome could not be rejected, despite the fact that it contains several completely linked protein-coding genes...- A unique recent origin of the allotetraploid species Arabidopsis suecica: Evidence from nuclear DNA markersMattias Jakobsson
Bioinformatics Program, Department of Human Genetics, University of Michigan, USA
Mol Biol Evol 23:1217-31. 2006..When combined with what is known about the history of glaciations, our results suggest that A. suecica originated south of its present distribution in Sweden and Finland and then migrated north, perhaps in the wake of the retreating ice... - CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structureMattias Jakobsson
Center for Computational Medicine and Biology, Department of Human Genetics, University of Michigan, Ann Arbor, MI, USA
Bioinformatics 23:1801-6. 2007.... - The probability distribution under a population divergence model of the number of genetic founding lineages of a population or speciesMattias Jakobsson
Bioinformatics Program, Department of Human Genetics, University of Michigan, 2017 Palmer Commons, 100 Washtenaw Ave, Ann Arbor, MI 48109 2218, USA
Theor Popul Biol 71:502-23. 2007.... 
Out of Africa: modern human origins special feature: explaining worldwide patterns of human genetic variation using a coalescent-based serial founder model of migration outward from AfricaMichael DeGiorgio
Center for Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI 48109 2218, USA
Proc Natl Acad Sci U S A 106:16057-62. 2009....- Haplotype variation and genotype imputation in African populationsLucy Huang
Center for Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, USA
Genet Epidemiol 35:766-80. 2011..Our results provide an empirical basis for facilitating the selection of reference panels in GWA studies of diverse human populations, especially those of African ancestry... - Sequence determinants of human microsatellite variabilityTrevor J Pemberton
Department of Human Genetics, University of Michigan, Ann Arbor, Michigan 48109, USA
BMC Genomics 10:612. 2009.... - Comparing spatial maps of human population-genetic variation using Procrustes analysisChaolong Wang
University of Michigan, USA
Stat Appl Genet Mol Biol 9:Article 13. 2010.... - ADZE: a rarefaction approach for counting alleles private to combinations of populationsZachary A Szpiech
Center for Computational Medicine and Biology, Department of Human Genetics, University of Michigan, Ann Arbor, Michigan 48109, USA
Bioinformatics 24:2498-504. 2008..However, sample sizes often differ across populations, sometimes making it difficult to assess allelic distributions across groups... - Evolution of chloroplast mononucleotide microsatellites in Arabidopsis thalianaMattias Jakobsson
Department of Cell and Organism Biology, Genetics, Lund University, Lund, Sweden
Theor Appl Genet 114:223-35. 2007..By fitting the slippage models to the Genbank sequence of chromosome 1, we show that the difference between microsatellite variation in the nucleus and the chloroplast is largely due to differences in slippage rate... 
Genotype, haplotype and copy-number variation in worldwide human populationsMattias Jakobsson
Center for Computational Medicine and Biology, University of Michigan, Ann Arbor, Michigan 48109, USA
Nature 451:998-1003. 2008..Our results produce new inferences about inter-population variation, support the utility of CNVs in human population-genetic research, and serve as a genomic resource for human-genetic studies in diverse worldwide populations...- The relationship between homozygosity and the frequency of the most frequent alleleNoah A Rosenberg
Department of Human Genetics, Center for Computational Medicine and Biology, and the Life Sciences Institute, University of Michigan, Ann Arbor, Michigan 48109 2218, USA
Genetics 179:2027-36. 2008.... - Mode of reproduction in Arabidopsis suecicaTorbjorn Sall
Department of Cell and Organism Biology, Genetics, Lund University, Lund, Sweden
Hereditas 141:313-7. 2004..The high level of individual homozygosity is due both to a high level of selfing and to the underlying population structure... - A worldwide survey of haplotype variation and linkage disequilibrium in the human genomeDonald F Conrad
Department of Human Genetics, University of Chicago, 920 East 58th Street, Chicago, Illinois 60637, USA
Nat Genet 38:1251-60. 2006..Consequently, although the portability of tag SNPs based on the HapMap is reduced in low-LD Africans, the HapMap will be helpful for the design of genome-wide association mapping studies in nearly all human populations... - Demographic history of european populations of Arabidopsis thalianaOlivier Francois
Institut National Polytechnique de Grenoble, Grenoble, France
PLoS Genet 4:e1000075. 2008..However, the speed and time frame of the model also suggest that the migration of A. thaliana into Europe may have accompanied the spread of agriculture during the Neolithic transition... - The pattern of polymorphism in Arabidopsis thalianaMagnus Nordborg
Molecular and Computational Biology, University of Southern California, Los Angeles, California, USA
PLoS Biol 3:e196. 2005..Despite this, our data support the utility of A. thaliana as a model for evolutionary functional genomics... - Genetic variation and population structure in native AmericansSijia Wang
The Galton Laboratory, Department of Biology, University College London, London, United Kingdom
PLoS Genet 3:e185. 2007..These findings offer new insights into the process of population dispersal and differentiation during the peopling of the Americas...