Mattias Jakobsson

Summary

Affiliation: University of Michigan
Country: USA

Publications

  1. ncbi request reprint The probability distribution under a population divergence model of the number of genetic founding lineages of a population or species
    Mattias Jakobsson
    Bioinformatics Program, Department of Human Genetics, University of Michigan, 2017 Palmer Commons, 100 Washtenaw Ave, Ann Arbor, MI 48109 2218, USA
    Theor Popul Biol 71:502-23. 2007
  2. ncbi request reprint A unique recent origin of the allotetraploid species Arabidopsis suecica: Evidence from nuclear DNA markers
    Mattias Jakobsson
    Bioinformatics Program, Department of Human Genetics, University of Michigan, USA
    Mol Biol Evol 23:1217-31. 2006
  3. ncbi request reprint CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure
    Mattias Jakobsson
    Center for Computational Medicine and Biology, Department of Human Genetics, University of Michigan, Ann Arbor, MI, USA
    Bioinformatics 23:1801-6. 2007
  4. ncbi request reprint The evolutionary history of the common chloroplast genome of Arabidopsis thaliana and A. suecica
    M Jakobsson
    Department of Cell and Organism Biology, Genetics, Lund University, Lund, Sweden
    J Evol Biol 20:104-21. 2007
  5. pmc Out of Africa: modern human origins special feature: explaining worldwide patterns of human genetic variation using a coalescent-based serial founder model of migration outward from Africa
    Michael DeGiorgio
    Center for Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI 48109 2218, USA
    Proc Natl Acad Sci U S A 106:16057-62. 2009
  6. pmc Haplotype variation and genotype imputation in African populations
    Lucy Huang
    Center for Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, USA
    Genet Epidemiol 35:766-80. 2011
  7. pmc Sequence determinants of human microsatellite variability
    Trevor J Pemberton
    Department of Human Genetics, University of Michigan, Ann Arbor, Michigan 48109, USA
    BMC Genomics 10:612. 2009
  8. pmc Comparing spatial maps of human population-genetic variation using Procrustes analysis
    Chaolong Wang
    University of Michigan, USA
    Stat Appl Genet Mol Biol 9:Article 13. 2010
  9. pmc ADZE: a rarefaction approach for counting alleles private to combinations of populations
    Zachary A Szpiech
    Center for Computational Medicine and Biology, Department of Human Genetics, University of Michigan, Ann Arbor, Michigan 48109, USA
    Bioinformatics 24:2498-504. 2008
  10. ncbi request reprint Evolution of chloroplast mononucleotide microsatellites in Arabidopsis thaliana
    Mattias Jakobsson
    Department of Cell and Organism Biology, Genetics, Lund University, Lund, Sweden
    Theor Appl Genet 114:223-35. 2007

Detail Information

Publications17

  1. ncbi request reprint The probability distribution under a population divergence model of the number of genetic founding lineages of a population or species
    Mattias Jakobsson
    Bioinformatics Program, Department of Human Genetics, University of Michigan, 2017 Palmer Commons, 100 Washtenaw Ave, Ann Arbor, MI 48109 2218, USA
    Theor Popul Biol 71:502-23. 2007
    ....
  2. ncbi request reprint A unique recent origin of the allotetraploid species Arabidopsis suecica: Evidence from nuclear DNA markers
    Mattias Jakobsson
    Bioinformatics Program, Department of Human Genetics, University of Michigan, USA
    Mol Biol Evol 23:1217-31. 2006
    ..When combined with what is known about the history of glaciations, our results suggest that A. suecica originated south of its present distribution in Sweden and Finland and then migrated north, perhaps in the wake of the retreating ice...
  3. ncbi request reprint CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure
    Mattias Jakobsson
    Center for Computational Medicine and Biology, Department of Human Genetics, University of Michigan, Ann Arbor, MI, USA
    Bioinformatics 23:1801-6. 2007
    ....
  4. ncbi request reprint The evolutionary history of the common chloroplast genome of Arabidopsis thaliana and A. suecica
    M Jakobsson
    Department of Cell and Organism Biology, Genetics, Lund University, Lund, Sweden
    J Evol Biol 20:104-21. 2007
    ..thaliana that come primarily from central Europe. Selective neutrality of the cp genome could not be rejected, despite the fact that it contains several completely linked protein-coding genes...
  5. pmc Out of Africa: modern human origins special feature: explaining worldwide patterns of human genetic variation using a coalescent-based serial founder model of migration outward from Africa
    Michael DeGiorgio
    Center for Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI 48109 2218, USA
    Proc Natl Acad Sci U S A 106:16057-62. 2009
    ....
  6. pmc Haplotype variation and genotype imputation in African populations
    Lucy Huang
    Center for Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, USA
    Genet Epidemiol 35:766-80. 2011
    ..Our results provide an empirical basis for facilitating the selection of reference panels in GWA studies of diverse human populations, especially those of African ancestry...
  7. pmc Sequence determinants of human microsatellite variability
    Trevor J Pemberton
    Department of Human Genetics, University of Michigan, Ann Arbor, Michigan 48109, USA
    BMC Genomics 10:612. 2009
    ....
  8. pmc Comparing spatial maps of human population-genetic variation using Procrustes analysis
    Chaolong Wang
    University of Michigan, USA
    Stat Appl Genet Mol Biol 9:Article 13. 2010
    ....
  9. pmc ADZE: a rarefaction approach for counting alleles private to combinations of populations
    Zachary A Szpiech
    Center for Computational Medicine and Biology, Department of Human Genetics, University of Michigan, Ann Arbor, Michigan 48109, USA
    Bioinformatics 24:2498-504. 2008
    ..However, sample sizes often differ across populations, sometimes making it difficult to assess allelic distributions across groups...
  10. ncbi request reprint Evolution of chloroplast mononucleotide microsatellites in Arabidopsis thaliana
    Mattias Jakobsson
    Department of Cell and Organism Biology, Genetics, Lund University, Lund, Sweden
    Theor Appl Genet 114:223-35. 2007
    ..By fitting the slippage models to the Genbank sequence of chromosome 1, we show that the difference between microsatellite variation in the nucleus and the chloroplast is largely due to differences in slippage rate...
  11. doi request reprint Genotype, haplotype and copy-number variation in worldwide human populations
    Mattias Jakobsson
    Center for Computational Medicine and Biology, University of Michigan, Ann Arbor, Michigan 48109, USA
    Nature 451:998-1003. 2008
    ..Our results produce new inferences about inter-population variation, support the utility of CNVs in human population-genetic research, and serve as a genomic resource for human-genetic studies in diverse worldwide populations...
  12. pmc The relationship between homozygosity and the frequency of the most frequent allele
    Noah A Rosenberg
    Department of Human Genetics, Center for Computational Medicine and Biology, and the Life Sciences Institute, University of Michigan, Ann Arbor, Michigan 48109 2218, USA
    Genetics 179:2027-36. 2008
    ....
  13. ncbi request reprint Mode of reproduction in Arabidopsis suecica
    Torbjorn Sall
    Department of Cell and Organism Biology, Genetics, Lund University, Lund, Sweden
    Hereditas 141:313-7. 2004
    ..The high level of individual homozygosity is due both to a high level of selfing and to the underlying population structure...
  14. ncbi request reprint A worldwide survey of haplotype variation and linkage disequilibrium in the human genome
    Donald F Conrad
    Department of Human Genetics, University of Chicago, 920 East 58th Street, Chicago, Illinois 60637, USA
    Nat Genet 38:1251-60. 2006
    ..Consequently, although the portability of tag SNPs based on the HapMap is reduced in low-LD Africans, the HapMap will be helpful for the design of genome-wide association mapping studies in nearly all human populations...
  15. pmc Demographic history of european populations of Arabidopsis thaliana
    Olivier Francois
    Institut National Polytechnique de Grenoble, Grenoble, France
    PLoS Genet 4:e1000075. 2008
    ..However, the speed and time frame of the model also suggest that the migration of A. thaliana into Europe may have accompanied the spread of agriculture during the Neolithic transition...
  16. pmc The pattern of polymorphism in Arabidopsis thaliana
    Magnus Nordborg
    Molecular and Computational Biology, University of Southern California, Los Angeles, California, USA
    PLoS Biol 3:e196. 2005
    ..Despite this, our data support the utility of A. thaliana as a model for evolutionary functional genomics...
  17. pmc Genetic variation and population structure in native Americans
    Sijia Wang
    The Galton Laboratory, Department of Biology, University College London, London, United Kingdom
    PLoS Genet 3:e185. 2007
    ..These findings offer new insights into the process of population dispersal and differentiation during the peopling of the Americas...