Anthony Ivetac

Summary

Affiliation: University of California
Country: USA

Publications

  1. pmc Elucidating the inhibition mechanism of HIV-1 non-nucleoside reverse transcriptase inhibitors through multicopy molecular dynamics simulations
    Anthony Ivetac
    Department of Chemistry and Biochemistry, University of California San Diego, La Jolla, CA 92093 0365, USA
    J Mol Biol 388:644-58. 2009
  2. pmc Mapping the druggable allosteric space of G-protein coupled receptors: a fragment-based molecular dynamics approach
    Anthony Ivetac
    Department of Chemistry and Biochemistry, University of California San Diego, La Jolla, CA 92093, USA
    Chem Biol Drug Des 76:201-17. 2010
  3. pmc Molecular recognition in the case of flexible targets
    Anthony Ivetac
    Department of Chemistry and Biochemistry University of California San Diego, La Jolla, CA 92093 0365, USA
    Curr Pharm Des 17:1663-71. 2011
  4. doi request reprint A molecular dynamics ensemble-based approach for the mapping of druggable binding sites
    Anthony Ivetac
    Department of Chemistry and Biochemistry, Center for Theoretical Biological Physics, University of California, San Diego, La Jolla, CA, USA
    Methods Mol Biol 819:3-12. 2012
  5. pmc Predictive power of molecular dynamics receptor structures in virtual screening
    Sara E Nichols
    Department of Chemistry and Biochemistry, University of California San Diego, La Jolla, California 92093 0365, United States
    J Chem Inf Model 51:1439-46. 2011
  6. pmc Discovery of novel inhibitors of HIV-1 reverse transcriptase through virtual screening of experimental and theoretical ensembles
    Anthony Ivetac
    Department of Chemistry and Biochemistry, University of California at San Diego, La Jolla, CA, 92093 0365, USA
    Chem Biol Drug Des 83:521-31. 2014
  7. pmc Characterization of a clinical polymer-drug conjugate using multiscale modeling
    Lili X Peng
    Department of Bioengineering, University of California, San Diego, CA, USA
    Biopolymers 93:936-51. 2010

Detail Information

Publications7

  1. pmc Elucidating the inhibition mechanism of HIV-1 non-nucleoside reverse transcriptase inhibitors through multicopy molecular dynamics simulations
    Anthony Ivetac
    Department of Chemistry and Biochemistry, University of California San Diego, La Jolla, CA 92093 0365, USA
    J Mol Biol 388:644-58. 2009
    ..From a methodological point of view, our results suggest that the multicopy MD simulation approach is very useful when studying proteins that perform such large conformational changes...
  2. pmc Mapping the druggable allosteric space of G-protein coupled receptors: a fragment-based molecular dynamics approach
    Anthony Ivetac
    Department of Chemistry and Biochemistry, University of California San Diego, La Jolla, CA 92093, USA
    Chem Biol Drug Des 76:201-17. 2010
    ..This mapping data can now serve to drive a combination of fragment-based and virtual screening approaches for the discovery of small molecules that bind at these sites and which may offer highly selective therapies...
  3. pmc Molecular recognition in the case of flexible targets
    Anthony Ivetac
    Department of Chemistry and Biochemistry University of California San Diego, La Jolla, CA 92093 0365, USA
    Curr Pharm Des 17:1663-71. 2011
    ..We also discuss some encouraging developments, aimed at addressing current weaknesses of the RCS...
  4. doi request reprint A molecular dynamics ensemble-based approach for the mapping of druggable binding sites
    Anthony Ivetac
    Department of Chemistry and Biochemistry, Center for Theoretical Biological Physics, University of California, San Diego, La Jolla, CA, USA
    Methods Mol Biol 819:3-12. 2012
    ..This approach has recently been applied to a pair of human G-protein-coupled receptors (GPCRs), resulting in the detection of five potential allosteric sites...
  5. pmc Predictive power of molecular dynamics receptor structures in virtual screening
    Sara E Nichols
    Department of Chemistry and Biochemistry, University of California San Diego, La Jolla, California 92093 0365, United States
    J Chem Inf Model 51:1439-46. 2011
    ..Additionally, MD can move conformations previously not amenable to docking into the predictive range...
  6. pmc Discovery of novel inhibitors of HIV-1 reverse transcriptase through virtual screening of experimental and theoretical ensembles
    Anthony Ivetac
    Department of Chemistry and Biochemistry, University of California at San Diego, La Jolla, CA, 92093 0365, USA
    Chem Biol Drug Des 83:521-31. 2014
    ..Through a computational approach, we were able to discover two compounds which inhibit HIV replication and block the activity of RT, thus offering the potential for optimization into mature inhibitors. ..
  7. pmc Characterization of a clinical polymer-drug conjugate using multiscale modeling
    Lili X Peng
    Department of Bioengineering, University of California, San Diego, CA, USA
    Biopolymers 93:936-51. 2010
    ..This multiscale modeling approach may be advantageous for the design of cancer therapeutic delivery systems. © 2010 Wiley Periodicals, Inc. Biopolymers 93: 936-951, 2010...