Alisha K Holloway

Summary

Affiliation: University of California
Country: USA

Publications

  1. pmc Genomic analysis of the relationship between gene expression variation and DNA polymorphism in Drosophila simulans
    Mara K N Lawniczak
    Division of Cell and Molecular Biology, Imperial College London, London, SW7 2AZ, UK
    Genome Biol 9:R125. 2008
  2. pmc Rampant adaptive evolution in regions of proteins with unknown function in Drosophila simulans
    Alisha K Holloway
    Section of Evolution and Ecology, University of California at Davis, Davis, California, United States of America
    PLoS ONE 2:e1113. 2007
  3. ncbi request reprint Polyploids with different origins and ancestors form a single sexual polyploid species
    Alisha K Holloway
    Section of Integrative Biology, University of Texas, Austin, Texas 78712, USA
    Am Nat 167:E88-101. 2006
  4. ncbi request reprint Experimental evolution of gene duplicates in a bacterial plasmid model
    Alisha K Holloway
    Section of Evolution and Ecology, Center for Population Biology, University of California, Davis, CA 95616, USA
    J Mol Evol 64:215-22. 2007
  5. pmc Adaptive gene expression divergence inferred from population genomics
    Alisha K Holloway
    Section of Evolution and Ecology, University of California Davis, Davis, California, USA
    PLoS Genet 3:2007-13. 2007
  6. pmc Accelerated sequence divergence of conserved genomic elements in Drosophila melanogaster
    Alisha K Holloway
    Department of Evolution and Ecology and Center for Population Biology, University of California, Davis, California 95691, USA
    Genome Res 18:1592-601. 2008
  7. pmc Population genomics: whole-genome analysis of polymorphism and divergence in Drosophila simulans
    David J Begun
    Department of Evolution and Ecology, University of California Davis, Davis, California, United States of America
    PLoS Biol 5:e310. 2007
  8. pmc Pervasive and largely lineage-specific adaptive protein evolution in the dosage compensation complex of Drosophila melanogaster
    Mia T Levine
    Section of Evolution and Ecology, University of California, Davis, California 95616, USA
    Genetics 177:1959-62. 2007
  9. pmc Genomic variation in natural populations of Drosophila melanogaster
    Charles H Langley
    Department of Evolution and Ecology, University of California, Davis, CA 95616, USA
    Genetics 192:533-98. 2012
  10. pmc Recently evolved genes identified from Drosophila yakuba and D. erecta accessory gland expressed sequence tags
    David J Begun
    Section of Evolution and Ecology, University of California, Davis, California 95616, USA
    Genetics 172:1675-81. 2006

Detail Information

Publications11

  1. pmc Genomic analysis of the relationship between gene expression variation and DNA polymorphism in Drosophila simulans
    Mara K N Lawniczak
    Division of Cell and Molecular Biology, Imperial College London, London, SW7 2AZ, UK
    Genome Biol 9:R125. 2008
    ..Addressing this question requires linking population genomic data with gene expression variation...
  2. pmc Rampant adaptive evolution in regions of proteins with unknown function in Drosophila simulans
    Alisha K Holloway
    Section of Evolution and Ecology, University of California at Davis, Davis, California, United States of America
    PLoS ONE 2:e1113. 2007
    ..Non-domain regions of proteins clearly play a major role in adaptive protein evolution on a genomic scale and merit future investigations of their functional properties...
  3. ncbi request reprint Polyploids with different origins and ancestors form a single sexual polyploid species
    Alisha K Holloway
    Section of Integrative Biology, University of Texas, Austin, Texas 78712, USA
    Am Nat 167:E88-101. 2006
    ..Thus, polyploid species may have complex origins, especially in systems in which isolating mechanisms (such as advertisement calls) are affected directly through hybridization and polyploidy...
  4. ncbi request reprint Experimental evolution of gene duplicates in a bacterial plasmid model
    Alisha K Holloway
    Section of Evolution and Ecology, Center for Population Biology, University of California, Davis, CA 95616, USA
    J Mol Evol 64:215-22. 2007
    ..This study highlights the importance of the cost of duplicate genes and the quantitative nature of the tradeoff in the evolution of gene duplication through functional divergence...
  5. pmc Adaptive gene expression divergence inferred from population genomics
    Alisha K Holloway
    Section of Evolution and Ecology, University of California Davis, Davis, California, USA
    PLoS Genet 3:2007-13. 2007
    ..Our results provide a genomic view of the intimate link between selection acting on a phenotype and associated genic evolution...
  6. pmc Accelerated sequence divergence of conserved genomic elements in Drosophila melanogaster
    Alisha K Holloway
    Department of Evolution and Ecology and Center for Population Biology, University of California, Davis, California 95691, USA
    Genome Res 18:1592-601. 2008
    ..Our analysis also highlights interesting noncoding genomic regions, such as regulatory regions in the gene gooseberry-neuro and a putative novel miRNA...
  7. pmc Population genomics: whole-genome analysis of polymorphism and divergence in Drosophila simulans
    David J Begun
    Department of Evolution and Ecology, University of California Davis, Davis, California, United States of America
    PLoS Biol 5:e310. 2007
    ..simulans...
  8. pmc Pervasive and largely lineage-specific adaptive protein evolution in the dosage compensation complex of Drosophila melanogaster
    Mia T Levine
    Section of Evolution and Ecology, University of California, Davis, California 95616, USA
    Genetics 177:1959-62. 2007
    ..melanogaster. Within these four proteins, several domains that range in function from X chromosome localization to protein-protein interactions have elevated, D. melanogaster-specific, amino acid divergence...
  9. pmc Genomic variation in natural populations of Drosophila melanogaster
    Charles H Langley
    Department of Evolution and Ecology, University of California, Davis, CA 95616, USA
    Genetics 192:533-98. 2012
    ..Comparison of the variation among these genomes to variation among genomes from D. simulans suggests that many targets of directional selection are shared between these species...
  10. pmc Recently evolved genes identified from Drosophila yakuba and D. erecta accessory gland expressed sequence tags
    David J Begun
    Section of Evolution and Ecology, University of California, Davis, California 95616, USA
    Genetics 172:1675-81. 2006
    ..We found no evidence that these novel genes are attributable primarily to duplication and divergence, which suggests the possibility that Acp's or other genes coding for small proteins may originate from ancestrally noncoding DNA...
  11. ncbi request reprint Molecular evolution and population genetics of duplicated accessory gland protein genes in Drosophila
    Alisha K Holloway
    Mol Biol Evol 21:1625-8. 2004
    ..These data support the idea that selection on reproduction-related genes may drive divergence of populations within species, and strengthen the conclusion that Acps may often be under directional selection in Drosophila...