Kasper D Hansen

Summary

Affiliation: University of California
Country: USA

Publications

  1. pmc Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments
    James H Bullard
    Division of Biostatistics, University of California, Berkeley, Berkeley, CA, USA
    BMC Bioinformatics 11:94. 2010
  2. pmc Biases in Illumina transcriptome sequencing caused by random hexamer priming
    Kasper D Hansen
    Division of Biostatistics, School of Public Health, UC Berkeley, 101 Haviland Hall, Berkeley, CA 94720 7358, USA
    Nucleic Acids Res 38:e131. 2010
  3. pmc Conservation of an RNA regulatory map between Drosophila and mammals
    Angela N Brooks
    Department of Molecular and Cell Biology, University of California, Berkeley, California 94720, USA
    Genome Res 21:193-202. 2011

Collaborators

Detail Information

Publications3

  1. pmc Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments
    James H Bullard
    Division of Biostatistics, University of California, Berkeley, Berkeley, CA, USA
    BMC Bioinformatics 11:94. 2010
    ..We provide a detailed evaluation of statistical methods for normalization and differential expression (DE) analysis of Illumina transcriptome sequencing (mRNA-Seq) data...
  2. pmc Biases in Illumina transcriptome sequencing caused by random hexamer priming
    Kasper D Hansen
    Division of Biostatistics, School of Public Health, UC Berkeley, 101 Haviland Hall, Berkeley, CA 94720 7358, USA
    Nucleic Acids Res 38:e131. 2010
    ..We provide a read count reweighting scheme, based on the nucleotide frequencies of the reads, that mitigates the impact of the bias...
  3. pmc Conservation of an RNA regulatory map between Drosophila and mammals
    Angela N Brooks
    Department of Molecular and Cell Biology, University of California, Berkeley, California 94720, USA
    Genome Res 21:193-202. 2011
    ..This observation suggests that the regulatory codes of individual RNA binding proteins may be nearly immutable, yet the regulatory modules controlled by these proteins are highly evolvable...