Rebecca R Gray
Affiliation: University of Florida
- Ancient, independent evolution and distinct molecular features of the novel human T-lymphotropic virus type 4William M Switzer
Laboratory Branch, Division of HIV AIDS Prevention, National Center for HIV AIDS, Viral Hepatitis, STD, and TB Prevention, Centers for Disease Control and Prevention, Atlanta, GA 30333, USA
Retrovirology 6:9. 2009..Analysis of full-length genomes can provide basic information on the evolutionary history and replication and pathogenic potential of new viruses...
- Testing spatiotemporal hypothesis of bacterial evolution using methicillin-resistant Staphylococcus aureus ST239 genome-wide data within a bayesian frameworkRebecca R Gray
Emerging Pathogens Institute, University of Florida, FL, USA
Mol Biol Evol 28:1593-603. 2011..Future applications of this approach to other bacterial strains may provide valuable epidemiological insights that may justify the cost of genome-wide typing...
- Efficient transmission and persistence of low-frequency SIVmac251 variants in CD8-depleted rhesus macaques with different neuropathologySamantha L Strickland
Department of Pathology, Immunology, and Laboratory Medicine, University of Florida, Gainesville, FL, USA
J Gen Virol 93:925-38. 2012....
- An exploratory algorithm to identify intra-host recombinant viral sequencesMarco Salemi
Department of Pathology, Immunology, and Laboratory Medicine, University of Florida, College of Medicine, 1376 Mowry Road, P O Box 106633, Gainesville, FL 32610, USA
Mol Phylogenet Evol 49:618-28. 2008....
- Spatial phylodynamics of HIV-1 epidemic emergence in east AfricaRebecca R Gray
Department of Pathology, Immunology, and Laboratory Medicine, University of Florida, Gainesville, Florida 32610, USA
AIDS 23:F9-F17. 2009..In order to characterize the demographic history of HIV-1 subtypes A and D in east Africa, we examined molecular epidemiology, geographical and historical data...
- Distinct patterns of HIV-1 evolution within metastatic tissues in patients with non-Hodgkins lymphomaMarco Salemi
Department of Pathology Immunology and Laboratory Medicine, University of Florida, Gainesville, Florida, United States of America
PLoS ONE 4:e8153. 2009..Moreover, the study indicates that HIV could be used as an effective marker to study the origin and dissemination of lymphomas in vivo...
- A novel methodology for large-scale phylogeny partitionMattia C F Prosperi
Clinic of Infectious Diseases, Catholic University of the Sacred Heart, Rome, Italy
Nat Commun 2:321. 2011..Our method takes an advantage of a flexible notion of transmission cluster and can become a general framework to analyse other epidemics...
- Spatial accessibility and the spread of HIV-1 subtypes and recombinantsAndrew J Tatem
aDepartment of Geography bEmerging Pathogens Institute, University of Florida, Gainesville, Florida cFogarty International Center, National Institutes of Health, Bethesda, Maryland, USA dNuffield Department of Obstetrics and Gynaecology eDepartment of Zoology, University of Oxford, Oxford, UK fDepartment of Pathology, Immunology and Laboratory Medicine, University of Florida, Gainesville, Florida, USA
AIDS 26:2351-60. 2012..We sought to address the question of whether accessibility has been a significant factor in HIV-1 spread across mainland Africa through spatial analyses of molecular epidemiology, transport network and land cover data...
- Significant genetic heterogeneity of the SIVmac251 viral swarm derived from different sourcesSamantha L Strickland
Department of Pathology, Immunology, and Laboratory Medicine, University of Florida, Gainesville, USA
AIDS Res Hum Retroviruses 27:1327-32. 2011..This finding highlights the importance of characterizing the exact source and genetic makeup of the infecting inoculum to achieve controlled experimental conditions and enable meaningful comparisons across studies...
- HIV-1 Subtype distribution in morocco based on national sentinel surveillance data 2004-2005Mohammed Akrim
Department of Epidemiology and Emerging Pathogens Institute, University of Florida, Gainesville, USA
AIDS Res Ther 9:5. 2012..abstract:..
- Phylodynamics of HIV-1 in lymphoid and non-lymphoid tissues reveals a central role for the thymus in emergence of CXCR4-using quasispeciesMarco Salemi
Department of Pathology, Immunology, and Laboratory Medicine, University of Florida, Gainesville, Florida, USA
PLoS ONE 2:e950. 2007..Virtually no studies have evaluated the HIV-1 quasispecies present in vivo within thymic and lymphoid tissues or the evolutionary relationship between R5 and X4 viruses in tissues and peripheral blood...