Rebecca R Gray

Summary

Affiliation: University of Florida
Country: USA

Publications

  1. pmc Ancient, independent evolution and distinct molecular features of the novel human T-lymphotropic virus type 4
    William M Switzer
    Laboratory Branch, Division of HIV AIDS Prevention, National Center for HIV AIDS, Viral Hepatitis, STD, and TB Prevention, Centers for Disease Control and Prevention, Atlanta, GA 30333, USA
    Retrovirology 6:9. 2009
  2. pmc Testing spatiotemporal hypothesis of bacterial evolution using methicillin-resistant Staphylococcus aureus ST239 genome-wide data within a bayesian framework
    Rebecca R Gray
    Emerging Pathogens Institute, University of Florida, FL, USA
    Mol Biol Evol 28:1593-603. 2011
  3. pmc Efficient transmission and persistence of low-frequency SIVmac251 variants in CD8-depleted rhesus macaques with different neuropathology
    Samantha L Strickland
    Department of Pathology, Immunology, and Laboratory Medicine, University of Florida, Gainesville, FL, USA
    J Gen Virol 93:925-38. 2012
  4. doi request reprint Spatial accessibility and the spread of HIV-1 subtypes and recombinants
    Andrew J Tatem
    Department of Geography, University of Florida, Gainesville, USA
    AIDS 26:2351-60. 2012
  5. pmc An exploratory algorithm to identify intra-host recombinant viral sequences
    Marco Salemi
    Department of Pathology, Immunology, and Laboratory Medicine, University of Florida, College of Medicine, 1376 Mowry Road, P O Box 106633, Gainesville, FL 32610, USA
    Mol Phylogenet Evol 49:618-28. 2008
  6. pmc Spatial phylodynamics of HIV-1 epidemic emergence in east Africa
    Rebecca R Gray
    Department of Pathology, Immunology, and Laboratory Medicine, University of Florida, Gainesville, Florida 32610, USA
    AIDS 23:F9-F17. 2009
  7. pmc Distinct patterns of HIV-1 evolution within metastatic tissues in patients with non-Hodgkins lymphoma
    Marco Salemi
    Department of Pathology Immunology and Laboratory Medicine, University of Florida, Gainesville, Florida, United States of America
    PLoS ONE 4:e8153. 2009
  8. doi request reprint A novel methodology for large-scale phylogeny partition
    Mattia C F Prosperi
    Clinic of Infectious Diseases, Catholic University of the Sacred Heart, Rome, Italy
    Nat Commun 2:321. 2011
  9. pmc Significant genetic heterogeneity of the SIVmac251 viral swarm derived from different sources
    Samantha L Strickland
    Department of Pathology, Immunology, and Laboratory Medicine, University of Florida, Gainesville, USA
    AIDS Res Hum Retroviruses 27:1327-32. 2011
  10. pmc HIV-1 Subtype distribution in morocco based on national sentinel surveillance data 2004-2005
    Mohammed Akrim
    Department of Epidemiology and Emerging Pathogens Institute, University of Florida, Gainesville, USA
    AIDS Res Ther 9:5. 2012

Collaborators

Detail Information

Publications11

  1. pmc Ancient, independent evolution and distinct molecular features of the novel human T-lymphotropic virus type 4
    William M Switzer
    Laboratory Branch, Division of HIV AIDS Prevention, National Center for HIV AIDS, Viral Hepatitis, STD, and TB Prevention, Centers for Disease Control and Prevention, Atlanta, GA 30333, USA
    Retrovirology 6:9. 2009
    ..Analysis of full-length genomes can provide basic information on the evolutionary history and replication and pathogenic potential of new viruses...
  2. pmc Testing spatiotemporal hypothesis of bacterial evolution using methicillin-resistant Staphylococcus aureus ST239 genome-wide data within a bayesian framework
    Rebecca R Gray
    Emerging Pathogens Institute, University of Florida, FL, USA
    Mol Biol Evol 28:1593-603. 2011
    ..Future applications of this approach to other bacterial strains may provide valuable epidemiological insights that may justify the cost of genome-wide typing...
  3. pmc Efficient transmission and persistence of low-frequency SIVmac251 variants in CD8-depleted rhesus macaques with different neuropathology
    Samantha L Strickland
    Department of Pathology, Immunology, and Laboratory Medicine, University of Florida, Gainesville, FL, USA
    J Gen Virol 93:925-38. 2012
    ....
  4. doi request reprint Spatial accessibility and the spread of HIV-1 subtypes and recombinants
    Andrew J Tatem
    Department of Geography, University of Florida, Gainesville, USA
    AIDS 26:2351-60. 2012
    ..We sought to address the question of whether accessibility has been a significant factor in HIV-1 spread across mainland Africa through spatial analyses of molecular epidemiology, transport network and land cover data...
  5. pmc An exploratory algorithm to identify intra-host recombinant viral sequences
    Marco Salemi
    Department of Pathology, Immunology, and Laboratory Medicine, University of Florida, College of Medicine, 1376 Mowry Road, P O Box 106633, Gainesville, FL 32610, USA
    Mol Phylogenet Evol 49:618-28. 2008
    ....
  6. pmc Spatial phylodynamics of HIV-1 epidemic emergence in east Africa
    Rebecca R Gray
    Department of Pathology, Immunology, and Laboratory Medicine, University of Florida, Gainesville, Florida 32610, USA
    AIDS 23:F9-F17. 2009
    ..In order to characterize the demographic history of HIV-1 subtypes A and D in east Africa, we examined molecular epidemiology, geographical and historical data...
  7. pmc Distinct patterns of HIV-1 evolution within metastatic tissues in patients with non-Hodgkins lymphoma
    Marco Salemi
    Department of Pathology Immunology and Laboratory Medicine, University of Florida, Gainesville, Florida, United States of America
    PLoS ONE 4:e8153. 2009
    ..Moreover, the study indicates that HIV could be used as an effective marker to study the origin and dissemination of lymphomas in vivo...
  8. doi request reprint A novel methodology for large-scale phylogeny partition
    Mattia C F Prosperi
    Clinic of Infectious Diseases, Catholic University of the Sacred Heart, Rome, Italy
    Nat Commun 2:321. 2011
    ..Our method takes an advantage of a flexible notion of transmission cluster and can become a general framework to analyse other epidemics...
  9. pmc Significant genetic heterogeneity of the SIVmac251 viral swarm derived from different sources
    Samantha L Strickland
    Department of Pathology, Immunology, and Laboratory Medicine, University of Florida, Gainesville, USA
    AIDS Res Hum Retroviruses 27:1327-32. 2011
    ..This finding highlights the importance of characterizing the exact source and genetic makeup of the infecting inoculum to achieve controlled experimental conditions and enable meaningful comparisons across studies...
  10. pmc HIV-1 Subtype distribution in morocco based on national sentinel surveillance data 2004-2005
    Mohammed Akrim
    Department of Epidemiology and Emerging Pathogens Institute, University of Florida, Gainesville, USA
    AIDS Res Ther 9:5. 2012
    ..abstract:..
  11. pmc Phylodynamics of HIV-1 in lymphoid and non-lymphoid tissues reveals a central role for the thymus in emergence of CXCR4-using quasispecies
    Marco Salemi
    Department of Pathology, Immunology, and Laboratory Medicine, University of Florida, Gainesville, Florida, USA
    PLoS ONE 2:e950. 2007
    ..Virtually no studies have evaluated the HIV-1 quasispecies present in vivo within thymic and lymphoid tissues or the evolutionary relationship between R5 and X4 viruses in tissues and peripheral blood...