Antonio Gonzalez

Summary

Affiliation: University of Colorado
Country: USA

Publications

  1. pmc SitePainter: a tool for exploring biogeographical patterns
    Antonio Gonzalez
    Department of Computer Science, University of Colorado at Boulder and Howard Hughes Medical Institute, Boulder, CO 80309, USA
    Bioinformatics 28:436-8. 2012
  2. doi request reprint Using QIIME to analyze 16S rRNA gene sequences from microbial communities
    Justin Kuczynski
    Department of Molecular, Cellular, and Developmental Biology, University of Colorado, Boulder, Colorado, USA
    Curr Protoc Microbiol . 2012
  3. pmc Characterizing microbial communities through space and time
    Antonio Gonzalez
    Department of Computer Science, University of Colorado at Boulder, Boulder, CO 80309, USA
    Curr Opin Biotechnol 23:431-6. 2012
  4. pmc Moving pictures of the human microbiome
    J Gregory Caporaso
    Department of Chemistry and Biochemistry, University of Colorado, 215 UCB, Boulder, CO 80309, USA
    Genome Biol 12:R50. 2011
  5. ncbi request reprint Convergence of gut microbiomes in myrmecophagous mammals
    Frédéric Delsuc
    Institut des Sciences de l Evolution, UMR 5554 CNRS IRD, Universite Montpellier 2, Montpellier, France Department of Chemistry and Biochemistry, University of Colorado, Boulder, CO, 80309, USA BioFrontiers Institute, University of Colorado, Boulder, CO, 80309, USA
    Mol Ecol 23:1301-17. 2014
  6. doi request reprint Bacteria and diatom co-occurrence patterns in microbial mats from polar desert streams
    Lee F Stanish
    Institute of Arctic and Alpine Research, University of Colorado, 1560 30th St, Campus Box 450, Boulder, Colorado, USA
    Environ Microbiol 15:1115-31. 2013
  7. ncbi request reprint Advancing our understanding of the human microbiome using QIIME
    José A Navas-Molina
    Department of Computer Science, University of Colorado, Boulder, Colorado, USA
    Methods Enzymol 531:371-444. 2013
  8. pmc Using QIIME to analyze 16S rRNA gene sequences from microbial communities
    Justin Kuczynski
    Department of Molecular, Cellular, and Developmental Biology, University of Colorado, Boulder, Colorado, USA
    Curr Protoc Bioinformatics . 2011
  9. pmc Advancing analytical algorithms and pipelines for billions of microbial sequences
    Antonio Gonzalez
    Department of Computer Science, University of Colorado at Boulder, Boulder, CO 80309, USA
    Curr Opin Biotechnol 23:64-71. 2012
  10. pmc Comparison of the vaginal microbial communities in women with recurrent genital HSV receiving acyclovir intravaginal rings
    Luke K Ursell
    Department of Chemistry and Biochemistry, University of Colorado at Boulder, Boulder, CO, USA
    Antiviral Res 102:87-94. 2014

Collaborators

Detail Information

Publications12

  1. pmc SitePainter: a tool for exploring biogeographical patterns
    Antonio Gonzalez
    Department of Computer Science, University of Colorado at Boulder and Howard Hughes Medical Institute, Boulder, CO 80309, USA
    Bioinformatics 28:436-8. 2012
    ..SitePainter thus increases the visual power and ability to explore spatially explicit studies...
  2. doi request reprint Using QIIME to analyze 16S rRNA gene sequences from microbial communities
    Justin Kuczynski
    Department of Molecular, Cellular, and Developmental Biology, University of Colorado, Boulder, Colorado, USA
    Curr Protoc Microbiol . 2012
    ..The following protocols describe how to install QIIME on a single computer and use it to analyze microbial 16S sequence data from nine distinct microbial communities...
  3. pmc Characterizing microbial communities through space and time
    Antonio Gonzalez
    Department of Computer Science, University of Colorado at Boulder, Boulder, CO 80309, USA
    Curr Opin Biotechnol 23:431-6. 2012
    ..The fusion of proper spatio-temporal sampling, combined with modern multi-omics and computational tools, will provide insight into the tracking, development and manipulation of microbial communities...
  4. pmc Moving pictures of the human microbiome
    J Gregory Caporaso
    Department of Chemistry and Biochemistry, University of Colorado, 215 UCB, Boulder, CO 80309, USA
    Genome Biol 12:R50. 2011
    ..Here, we present the largest human microbiota time series analysis to date, covering two individuals at four body sites over 396 timepoints...
  5. ncbi request reprint Convergence of gut microbiomes in myrmecophagous mammals
    Frédéric Delsuc
    Institut des Sciences de l Evolution, UMR 5554 CNRS IRD, Universite Montpellier 2, Montpellier, France Department of Chemistry and Biochemistry, University of Colorado, Boulder, CO, 80309, USA BioFrontiers Institute, University of Colorado, Boulder, CO, 80309, USA
    Mol Ecol 23:1301-17. 2014
    ..This study sets the scene for future metagenomic studies aiming at evaluating potential convergence in functional gene content in the microbiomes of specialized mammalian myrmecophages...
  6. doi request reprint Bacteria and diatom co-occurrence patterns in microbial mats from polar desert streams
    Lee F Stanish
    Institute of Arctic and Alpine Research, University of Colorado, 1560 30th St, Campus Box 450, Boulder, Colorado, USA
    Environ Microbiol 15:1115-31. 2013
    ..Our results therefore demonstrate that the relationships between diatoms and bacteria are complex and may result from species interactions as well as niche-specific processes...
  7. ncbi request reprint Advancing our understanding of the human microbiome using QIIME
    José A Navas-Molina
    Department of Computer Science, University of Colorado, Boulder, Colorado, USA
    Methods Enzymol 531:371-444. 2013
    ..We present examples of some of the types of analyses that are enabled by QIIME and discuss how other tools, such as phyloseq and R, can be applied to expand upon these analyses. ..
  8. pmc Using QIIME to analyze 16S rRNA gene sequences from microbial communities
    Justin Kuczynski
    Department of Molecular, Cellular, and Developmental Biology, University of Colorado, Boulder, Colorado, USA
    Curr Protoc Bioinformatics . 2011
    ..The following protocols describe how to install QIIME on a single computer and use it to analyze microbial 16S sequence data from nine distinct microbial communities...
  9. pmc Advancing analytical algorithms and pipelines for billions of microbial sequences
    Antonio Gonzalez
    Department of Computer Science, University of Colorado at Boulder, Boulder, CO 80309, USA
    Curr Opin Biotechnol 23:64-71. 2012
    ..Such large-scale comparisons will allow us to fulfill the dream of rapid integration and comparison of microbial sequence data sets, in a replicable analytical environment, in order to describe the microbial world we inhabit...
  10. pmc Comparison of the vaginal microbial communities in women with recurrent genital HSV receiving acyclovir intravaginal rings
    Luke K Ursell
    Department of Chemistry and Biochemistry, University of Colorado at Boulder, Boulder, CO, USA
    Antiviral Res 102:87-94. 2014
    ..Rigorous, molecular analysis of the effects of intravaginal devices on the corresponding microbial communities shows promise for integration with traditional approaches in the clinical evaluation of candidate products. ..
  11. pmc Our microbial selves: what ecology can teach us
    Antonio Gonzalez
    Department of Computer Science, University of Colorado at Boulder, Boulder, Colorado 80309, USA
    EMBO Rep 12:775-84. 2011
    ....
  12. pmc The mind-body-microbial continuum
    Antonio Gonzalez
    Department of Computer Science, University of Colorado at Boulder, Boulder, Colorado 80309, USA
    Dialogues Clin Neurosci 13:55-62. 2011
    ..Better understanding of microbiome-encoded pathways for xenobiotic metabolism also has important implications for improving the efficacy of pharmacologic interventions with neuromodulatory agents...