- De novo likelihood-based measures for comparing genome assembliesMohammadreza Ghodsi
Center for Bioinformatics and Computational Biology, University of Maryland, College Park, Maryland, USA
BMC Res Notes 6:334. 2013..A key property of our metric is that the true genome sequence maximizes the score, unlike other commonly used metrics...
- DNACLUST: accurate and efficient clustering of phylogenetic marker genesMohammadreza Ghodsi
Department of Computer Science, University of Maryland, College Park, MD 20742, USA
BMC Bioinformatics 12:271. 2011..g., only one sequence per cluster needs to be provided to downstream analyses)...
- Alignment and clustering of phylogenetic markers--implications for microbial diversity studiesJames R White
Department of Computer Science, University of Maryland College Park, College Park, MD 20742, USA
BMC Bioinformatics 11:152. 2010..To date, however, there exists significant variability in analysis methods employed in these studies...