Jonathan A L Gelfond

Summary

Affiliation: University of Texas Health Science Center
Country: USA

Publications

  1. pmc Differential expression analysis with global network adjustment
    Jonathan A Gelfond
    Department of Epidemiology and Biostatistics, University of Texas Health Science Center San Antonio, San Antonio, Texas, USA
    BMC Bioinformatics 14:258. 2013
  2. pmc A Bayesian hidden Markov model for motif discovery through joint modeling of genomic sequence and ChIP-chip data
    Jonathan A L Gelfond
    Department of Epidemiology and Biostatistics, Mail Code 7933, University of Texas Health Science Center at San Antonio, 7703 Floyd Curl Drive, San Antonio, Texas 78229 3900, USA
    Biometrics 65:1087-95. 2009
  3. doi request reprint Principles for the ethical analysis of clinical and translational research
    Jonathan A L Gelfond
    Department of Epidemiology and Biostatistics, UT Health Science Center, San Antonio, TX 78229, USA
    Stat Med 30:2785-92. 2011
  4. doi request reprint Candidate gene association analysis of acute lymphoblastic leukemia identifies new susceptibility locus at 11p15 (LMO1)
    Joke Beuten
    Greehey Children s Cancer Research Institute, University of Texas Health Science Center at San Antonio, San Antonio, TX, USA
    Carcinogenesis 32:1349-53. 2011
  5. pmc MiR-351 transiently increases during muscle regeneration and promotes progenitor cell proliferation and survival upon differentiation
    Yongxin Chen
    Department of Pathology, University of Texas Health Science Center, San Antonio, Texas, USA
    Physiol Genomics 44:1042-51. 2012
  6. doi request reprint Single and multivariate associations of MSR1, ELAC2, and RNASEL with prostate cancer in an ethnic diverse cohort of men
    Joke Beuten
    Department of Pediatrics, University of Texas Health Science Center, San Antonio, TX 78229 3900, USA
    Cancer Epidemiol Biomarkers Prev 19:588-99. 2010
  7. pmc Association of chromosome 8q variants with prostate cancer risk in Caucasian and Hispanic men
    Joke Beuten
    Department of Pediatrics, University of Texas Health Science Center, San Antonio, TX 78229 3900, USA
    Carcinogenesis 30:1372-9. 2009
  8. doi request reprint Single and multigenic analysis of the association between variants in 12 steroid hormone metabolism genes and risk of prostate cancer
    Joke Beuten
    Department of Cellular and Structural Biology, The University of Texas Health Science Center, San Antonio, Texas 78229 3900, USA
    Cancer Epidemiol Biomarkers Prev 18:1869-80. 2009
  9. pmc Reproducibility of quantitative RT-PCR array in miRNA expression profiling and comparison with microarray analysis
    Yongxin Chen
    Department of Surgery, University of Texas Health Science Center, San Antonio, TX 78229, USA
    BMC Genomics 10:407. 2009
  10. doi request reprint Mood disorders in individuals with distal 18q deletions
    WILLIAM B DAVISS
    Department of Psychiatry, University of Texas Health Science Center at San Antonio, San Antonio, Texas
    Am J Med Genet B Neuropsychiatr Genet 162:879-88. 2013

Collaborators

Detail Information

Publications12

  1. pmc Differential expression analysis with global network adjustment
    Jonathan A Gelfond
    Department of Epidemiology and Biostatistics, University of Texas Health Science Center San Antonio, San Antonio, Texas, USA
    BMC Bioinformatics 14:258. 2013
    ..Nevertheless, there are large gene expression databases that can be used to construct networks that could be helpful in modeling transcriptional regulation in smaller experiments...
  2. pmc A Bayesian hidden Markov model for motif discovery through joint modeling of genomic sequence and ChIP-chip data
    Jonathan A L Gelfond
    Department of Epidemiology and Biostatistics, Mail Code 7933, University of Texas Health Science Center at San Antonio, 7703 Floyd Curl Drive, San Antonio, Texas 78229 3900, USA
    Biometrics 65:1087-95. 2009
    ..In simulations and applications to a yeast RAP1 dataset, the proposed method has favorable TFBS discovery performance compared to currently available two-stage procedures in terms of both sensitivity and specificity...
  3. doi request reprint Principles for the ethical analysis of clinical and translational research
    Jonathan A L Gelfond
    Department of Epidemiology and Biostatistics, UT Health Science Center, San Antonio, TX 78229, USA
    Stat Med 30:2785-92. 2011
    ..These principles are drawn from the literature on the ethics of data analysis and the American Statistical Association Ethical Guidelines for Statistical Practice...
  4. doi request reprint Candidate gene association analysis of acute lymphoblastic leukemia identifies new susceptibility locus at 11p15 (LMO1)
    Joke Beuten
    Greehey Children s Cancer Research Institute, University of Texas Health Science Center at San Antonio, San Antonio, TX, USA
    Carcinogenesis 32:1349-53. 2011
    ..These data show that genetic variants within LMO1 are associated with ALL and identify this gene as a strong candidate for precursor B-cell leukemogenesis...
  5. pmc MiR-351 transiently increases during muscle regeneration and promotes progenitor cell proliferation and survival upon differentiation
    Yongxin Chen
    Department of Pathology, University of Texas Health Science Center, San Antonio, Texas, USA
    Physiol Genomics 44:1042-51. 2012
    ....
  6. doi request reprint Single and multivariate associations of MSR1, ELAC2, and RNASEL with prostate cancer in an ethnic diverse cohort of men
    Joke Beuten
    Department of Pediatrics, University of Texas Health Science Center, San Antonio, TX 78229 3900, USA
    Cancer Epidemiol Biomarkers Prev 19:588-99. 2010
    ..Our findings corroborate the involvement of ELAC2, MSR1, and RNASEL in the etiology of prostate cancer even in individuals without a family history...
  7. pmc Association of chromosome 8q variants with prostate cancer risk in Caucasian and Hispanic men
    Joke Beuten
    Department of Pediatrics, University of Texas Health Science Center, San Antonio, TX 78229 3900, USA
    Carcinogenesis 30:1372-9. 2009
    ..This is the first report to investigate the involvement of 8q24 variants in the susceptibility for PCa in Hispanic men...
  8. doi request reprint Single and multigenic analysis of the association between variants in 12 steroid hormone metabolism genes and risk of prostate cancer
    Joke Beuten
    Department of Cellular and Structural Biology, The University of Texas Health Science Center, San Antonio, Texas 78229 3900, USA
    Cancer Epidemiol Biomarkers Prev 18:1869-80. 2009
    ..001). These data are consistent with a polygenic model of prostate cancer, indicating that multiple interacting genes of the steroid hormone pathway confer increased risk of prostate cancer...
  9. pmc Reproducibility of quantitative RT-PCR array in miRNA expression profiling and comparison with microarray analysis
    Yongxin Chen
    Department of Surgery, University of Texas Health Science Center, San Antonio, TX 78229, USA
    BMC Genomics 10:407. 2009
    ..Our study critically evaluated the performance of a novel miRNA expression profiling approach, quantitative RT-PCR array (qPCR-array), compared to miRNA detection with oligonucleotide microchip (microarray)...
  10. doi request reprint Mood disorders in individuals with distal 18q deletions
    WILLIAM B DAVISS
    Department of Psychiatry, University of Texas Health Science Center at San Antonio, San Antonio, Texas
    Am J Med Genet B Neuropsychiatr Genet 162:879-88. 2013
    ....
  11. doi request reprint Multilocus association of genetic variants in MLL, CREBBP, EP300, and TOP2A with childhood acute lymphoblastic leukemia in Hispanics from Texas
    Duangjai Piwkham
    Greehey Children s Cancer Research Institute, The University of Texas Health Science Center at San Antonio, San Antonio, Texas 78229, USA
    Cancer Epidemiol Biomarkers Prev 20:1204-12. 2011
    ....
  12. doi request reprint Genomic characterization of testis cancer: association of alterations with outcome of clinical stage 1 mixed germ cell nonseminomatous germ cell tumor of the testis
    Gihan H Mohamed
    Department of Pathology, University of Texas Health Science Center, San Antonio, TX 78229, USA
    Urology 80:485.e1-5. 2012
    ..To identify genomic markers that are reliable in predicting lymph node metastases in clinical stage 1 non-seminomatous germ cell tumors (NSGCTs)...