Johannes M Freudenberg

Summary

Affiliation: University of Cincinnati
Country: USA

Publications

  1. ncbi Genomics Portals: integrative web-platform for mining genomics data
    Kaustubh Shinde
    Laboratory for Statistical Genomics and Systems Biology, Department of Environmental Health, University of Cincinnati College of Medicine, Cincinnati OH 45267 0056, USA
    BMC Genomics 11:27. 2010
  2. ncbi CLEAN: CLustering Enrichment ANalysis
    Johannes M Freudenberg
    Laboratory for Statistical Genomics and Systems Biology, Department of Environmental Health, University of Cincinnati College of Medicine, 3223 Eden Av, ML 56, Cincinnati OH 45267 0056, USA
    BMC Bioinformatics 10:234. 2009
  3. ncbi Generalized random set framework for functional enrichment analysis using primary genomics datasets
    Johannes M Freudenberg
    Department of Environmental Health, University of Cincinnati College of Medicine, Cincinnati, OH 45267, USA
    Bioinformatics 27:70-7. 2011
  4. ncbi WebGimm: An integrated web-based platform for cluster analysis, functional analysis, and interactive visualization of results
    Vineet K Joshi
    Laboratory for Statistical Genomics and Systems Biology, Department of Environmental Health, University of Cincinnati College of Medicine, 3223 Eden Av, ML 56, Cincinnati OH 45267 0056, USA
    Source Code Biol Med 6:3. 2011
  5. ncbi A semi-parametric Bayesian model for unsupervised differential co-expression analysis
    Johannes M Freudenberg
    Laboratory for Statistical Genomics and Systems Biology, Department of Environmental Health, University of Cincinnati College of Medicine, Cincinnati OH 45267 0056, USA
    BMC Bioinformatics 11:234. 2010
  6. ncbi Research resource: estrogen-driven prolactin-mediated gene-expression networks in hormone-induced prostatic intraepithelial neoplasia
    Neville N C Tam
    Department of Environmental Health, University of Cincinnati Medical Center, Kettering Laboratory, Suite 128, 3223 Eden Avenue, Cincinnati, Ohio 45267 0056, USA
    Mol Endocrinol 24:2207-17. 2010

Collaborators

  • Mario Medvedovic
  • Shuk Mei Ho
  • Michael Wagner
  • Vineet K Joshi
  • Zhen Hu
  • Kaustubh Shinde
  • Neville N C Tam
  • Mukta Phatak
  • Krishnendu Ghosh
  • Jaroslaw Meller
  • Amy N Fullenkamp
  • Joshi K Vineet
  • Freudenberg M Johannes
  • Carol Y Y Szeto
  • Jing Chen
  • Qian Li

Detail Information

Publications6

  1. ncbi Genomics Portals: integrative web-platform for mining genomics data
    Kaustubh Shinde
    Laboratory for Statistical Genomics and Systems Biology, Department of Environmental Health, University of Cincinnati College of Medicine, Cincinnati OH 45267 0056, USA
    BMC Genomics 11:27. 2010
    ..Jointly, these two sources of information hold a tremendous potential for gaining new insights into functioning of living systems...
  2. ncbi CLEAN: CLustering Enrichment ANalysis
    Johannes M Freudenberg
    Laboratory for Statistical Genomics and Systems Biology, Department of Environmental Health, University of Cincinnati College of Medicine, 3223 Eden Av, ML 56, Cincinnati OH 45267 0056, USA
    BMC Bioinformatics 10:234. 2009
    ....
  3. ncbi Generalized random set framework for functional enrichment analysis using primary genomics datasets
    Johannes M Freudenberg
    Department of Environmental Health, University of Cincinnati College of Medicine, Cincinnati, OH 45267, USA
    Bioinformatics 27:70-7. 2011
    ..This can lead to loss of statistical power and can introduce biases affecting the interpretation of experimental results...
  4. ncbi WebGimm: An integrated web-based platform for cluster analysis, functional analysis, and interactive visualization of results
    Vineet K Joshi
    Laboratory for Statistical Genomics and Systems Biology, Department of Environmental Health, University of Cincinnati College of Medicine, 3223 Eden Av, ML 56, Cincinnati OH 45267 0056, USA
    Source Code Biol Med 6:3. 2011
    ..For Bioinformatics methods developers, WebGimm offers a convenient avenue to deploy their newly developed clustering methods. WebGimm server, software and manuals can be freely accessed at http://ClusterAnalysis.org/...
  5. ncbi A semi-parametric Bayesian model for unsupervised differential co-expression analysis
    Johannes M Freudenberg
    Laboratory for Statistical Genomics and Systems Biology, Department of Environmental Health, University of Cincinnati College of Medicine, Cincinnati OH 45267 0056, USA
    BMC Bioinformatics 11:234. 2010
    ..Given pre-defined sets of biological samples, such analysis aims at identifying genes that are co-expressed in one, but not in the other set of samples...
  6. ncbi Research resource: estrogen-driven prolactin-mediated gene-expression networks in hormone-induced prostatic intraepithelial neoplasia
    Neville N C Tam
    Department of Environmental Health, University of Cincinnati Medical Center, Kettering Laboratory, Suite 128, 3223 Eden Avenue, Cincinnati, Ohio 45267 0056, USA
    Mol Endocrinol 24:2207-17. 2010
    ....