Dmitri E Fomenko

Summary

Affiliation: University of Nebraska
Country: USA

Publications

  1. pmc The microbial selenoproteome of the Sargasso Sea
    Yan Zhang
    Department of Biochemistry, University of Nebraska, Lincoln, NE 68588 0664, USA
    Genome Biol 6:R37. 2005
  2. pmc Evolutionary dynamics of eukaryotic selenoproteomes: large selenoproteomes may associate with aquatic life and small with terrestrial life
    Alexey V Lobanov
    Department of Biochemistry, University of Nebraska, Lincoln, NE 68588, USA
    Genome Biol 8:R198. 2007
  3. pmc Comparative genomics of thiol oxidoreductases reveals widespread and essential functions of thiol-based redox control of cellular processes
    Dmitri E Fomenko
    Department of Biochemistry and Redox Biology Center, University of Nebraska Lincoln, USA
    Antioxid Redox Signal 16:193-201. 2012
  4. pmc Functional analysis of free methionine-R-sulfoxide reductase from Saccharomyces cerevisiae
    Dung Tien Le
    Department of Biochemistry and Redox Biology Center, University of Nebraska Lincoln, Lincoln, Nebraska 68588, USA
    J Biol Chem 284:4354-64. 2009
  5. pmc Analysis of methionine/selenomethionine oxidation and methionine sulfoxide reductase function using methionine-rich proteins and antibodies against their oxidized forms
    Dung Tien Le
    Department of Biochemistry and Redox Biology Center, University of Nebraska, Lincoln, Nebraska 68588, USA
    Biochemistry 47:6685-94. 2008
  6. pmc Characterization of surface-exposed reactive cysteine residues in Saccharomyces cerevisiae
    Stefano M Marino
    Department of Biochemistry and Redox Biology Center, University of Nebraska, Lincoln, Nebraska 68588, USA
    Biochemistry 49:7709-21. 2010
  7. pmc Compartmentalization and regulation of mitochondrial function by methionine sulfoxide reductases in yeast
    Alaattin Kaya
    Department of Biochemistry and Redox Biology Center, University of Nebraska, Lincoln, Nebraska 68588, USA
    Biochemistry 49:8618-25. 2010
  8. pmc Diversity of protein and mRNA forms of mammalian methionine sulfoxide reductase B1 due to intronization and protein processing
    Xinwen Liang
    Department of Biochemistry and Redox Biology Center, University of Nebraska Lincoln, Lincoln, Nebraska, United States of America
    PLoS ONE 5:e11497. 2010
  9. pmc MsrB1 (methionine-R-sulfoxide reductase 1) knock-out mice: roles of MsrB1 in redox regulation and identification of a novel selenoprotein form
    Dmitri E Fomenko
    Department of Biochemistry and Redox Biology Center, University of Nebraska, Lincoln, Nebraska 68588, USA
    J Biol Chem 284:5986-93. 2009
  10. pmc Functional diversity of cysteine residues in proteins and unique features of catalytic redox-active cysteines in thiol oxidoreductases
    Dmitri E Fomenko
    Department of Biochemistry and Redox Biology Center, University of Nebraska, Lincoln, NE 68588 0664, USA
    Mol Cells 26:228-35. 2008

Collaborators

Detail Information

Publications12

  1. pmc The microbial selenoproteome of the Sargasso Sea
    Yan Zhang
    Department of Biochemistry, University of Nebraska, Lincoln, NE 68588 0664, USA
    Genome Biol 6:R37. 2005
    ..Herein, we characterized the selenoproteome of the largest microbial sequence dataset, the Sargasso Sea environmental genome project...
  2. pmc Evolutionary dynamics of eukaryotic selenoproteomes: large selenoproteomes may associate with aquatic life and small with terrestrial life
    Alexey V Lobanov
    Department of Biochemistry, University of Nebraska, Lincoln, NE 68588, USA
    Genome Biol 8:R198. 2007
    ..Selenoproteins occur in both eukaryotes and prokaryotes, but the selenoprotein content of organisms (selenoproteome) is highly variable and some organisms do not utilize Sec at all...
  3. pmc Comparative genomics of thiol oxidoreductases reveals widespread and essential functions of thiol-based redox control of cellular processes
    Dmitri E Fomenko
    Department of Biochemistry and Redox Biology Center, University of Nebraska Lincoln, USA
    Antioxid Redox Signal 16:193-201. 2012
    ..We wanted to identify thiol oxidoreductases on a genome-wide scale and use this information to obtain insights into the general principles of thiol-based redox control...
  4. pmc Functional analysis of free methionine-R-sulfoxide reductase from Saccharomyces cerevisiae
    Dung Tien Le
    Department of Biochemistry and Redox Biology Center, University of Nebraska Lincoln, Lincoln, Nebraska 68588, USA
    J Biol Chem 284:4354-64. 2009
    ..The data show that fRMsr is the main enzyme responsible for the reduction of free Met-R-SO in S. cerevisiae...
  5. pmc Analysis of methionine/selenomethionine oxidation and methionine sulfoxide reductase function using methionine-rich proteins and antibodies against their oxidized forms
    Dung Tien Le
    Department of Biochemistry and Redox Biology Center, University of Nebraska, Lincoln, Nebraska 68588, USA
    Biochemistry 47:6685-94. 2008
    ..These findings, reagents, assays, and approaches should facilitate research and applications in the area of Met sulfoxide reduction, oxidative stress, and aging...
  6. pmc Characterization of surface-exposed reactive cysteine residues in Saccharomyces cerevisiae
    Stefano M Marino
    Department of Biochemistry and Redox Biology Center, University of Nebraska, Lincoln, Nebraska 68588, USA
    Biochemistry 49:7709-21. 2010
    ....
  7. pmc Compartmentalization and regulation of mitochondrial function by methionine sulfoxide reductases in yeast
    Alaattin Kaya
    Department of Biochemistry and Redox Biology Center, University of Nebraska, Lincoln, Nebraska 68588, USA
    Biochemistry 49:8618-25. 2010
    ..These results show that oxidative stress contributes to mitochondrial dysfunction through oxidation of methionine residues in proteins located in different cellular compartments...
  8. pmc Diversity of protein and mRNA forms of mammalian methionine sulfoxide reductase B1 due to intronization and protein processing
    Xinwen Liang
    Department of Biochemistry and Redox Biology Center, University of Nebraska Lincoln, Lincoln, Nebraska, United States of America
    PLoS ONE 5:e11497. 2010
    ..MsrB1 is a selenocysteine-containing cytosolic/nuclear Msr with high expression in liver and kidney...
  9. pmc MsrB1 (methionine-R-sulfoxide reductase 1) knock-out mice: roles of MsrB1 in redox regulation and identification of a novel selenoprotein form
    Dmitri E Fomenko
    Department of Biochemistry and Redox Biology Center, University of Nebraska, Lincoln, Nebraska 68588, USA
    J Biol Chem 284:5986-93. 2009
    ..Overall, this study established an important contribution of MsrB1 to the redox control in mouse liver and kidney and identified a novel form of this protein...
  10. pmc Functional diversity of cysteine residues in proteins and unique features of catalytic redox-active cysteines in thiol oxidoreductases
    Dmitri E Fomenko
    Department of Biochemistry and Redox Biology Center, University of Nebraska, Lincoln, NE 68588 0664, USA
    Mol Cells 26:228-35. 2008
    ....
  11. pmc Genetic code supports targeted insertion of two amino acids by one codon
    Anton A Turanov
    Department of Biochemistry and Redox Biology Center, University of Nebraska, Lincoln, NE 68588, USA
    Science 323:259-61. 2009
    ..Thus, the genetic code supports the use of one codon to code for multiple amino acids...
  12. pmc CxxS: fold-independent redox motif revealed by genome-wide searches for thiol/disulfide oxidoreductase function
    Dmitri E Fomenko
    Department of Biochemistry, University of Nebraska Lincoln, 68588 0664, USA
    Protein Sci 11:2285-96. 2002
    ..The data also indicate a general approach of genome-wide identification of redox proteins by searching for simple conserved motifs within secondary structure patterns...