Jeffrey L Feder

Summary

Affiliation: University of Notre Dame
Country: USA

Publications

  1. pmc Establishment of new mutations under divergence and genome hitchhiking
    Jeffrey L Feder
    Department of Biological Sciences, University of Notre Dame, Notre Dame, IN 46556, USA
    Philos Trans R Soc Lond B Biol Sci 367:461-74. 2012
  2. doi request reprint The genomics of speciation-with-gene-flow
    Jeffrey L Feder
    Department of Biological Sciences, University of Notre Dame, Notre Dame, IN 46556, USA
    Trends Genet 28:342-50. 2012
  3. doi request reprint Intergenic exchange, geographic isolation, and the evolution of bioluminescent color for Pyrophorus click beetles
    Jeffrey L Feder
    Department of Biological Sciences, University of Notre Dame, Notre Dame, Indiana 46556, USA
    Evolution 63:1203-16. 2009
  4. pmc Mayr, Dobzhansky, and Bush and the complexities of sympatric speciation in Rhagoletis
    Jeffrey L Feder
    Department of Biological Sciences, University of Notre Dame, Galvin Life Science Center, IN 46556 0369, USA
    Proc Natl Acad Sci U S A 102:6573-80. 2005
  5. doi request reprint Chromosomal inversions and species differences: when are genes affecting adaptive divergence and reproductive isolation expected to reside within inversions?
    Jeffrey L Feder
    Biological Sciences, University of Notre Dame, Notre Dame, Indiana 46556, USA
    Evolution 63:3061-75. 2009
  6. doi request reprint The efficacy of divergence hitchhiking in generating genomic islands during ecological speciation
    Jeffrey L Feder
    Dept of Biological Sciences, University of Notre Dame, Notre Dame, Indiana 46556, USA
    Evolution 64:1729-47. 2010
  7. doi request reprint Adaptive chromosomal divergence driven by mixed geographic mode of evolution
    Jeffrey L Feder
    Department of Biological Sciences, University of Notre Dame, Notre Dame, IN 46556, USA
    Evolution 65:2157-70. 2011
  8. pmc Allopatric genetic origins for sympatric host-plant shifts and race formation in Rhagoletis
    Jeffrey L Feder
    Department of Biological Sciences, P O Box 369, Galvin Life Science Center, University of Notre Dame, Notre Dame, IN 46556 0369, USA
    Proc Natl Acad Sci U S A 100:10314-9. 2003
  9. pmc Evidence for inversion polymorphism related to sympatric host race formation in the apple maggot fly, Rhagoletis pomonella
    Jeffrey L Feder
    Department of Biological Sciences, University of Notre Dame, Notre Dame, Indiana 46556 0369, USA
    Genetics 163:939-53. 2003
  10. doi request reprint Sequential sympatric speciation across trophic levels
    Andrew A Forbes
    Department of Biological Sciences, University of Notre Dame, Galvin Life Sciences Building, Notre Dame, IN 46556, USA
    Science 323:776-9. 2009

Detail Information

Publications35

  1. pmc Establishment of new mutations under divergence and genome hitchhiking
    Jeffrey L Feder
    Department of Biological Sciences, University of Notre Dame, Notre Dame, IN 46556, USA
    Philos Trans R Soc Lond B Biol Sci 367:461-74. 2012
    ..The results generate predictions about genome divergence at different points in the speciation process and avenues for further work...
  2. doi request reprint The genomics of speciation-with-gene-flow
    Jeffrey L Feder
    Department of Biological Sciences, University of Notre Dame, Notre Dame, IN 46556, USA
    Trends Genet 28:342-50. 2012
    ....
  3. doi request reprint Intergenic exchange, geographic isolation, and the evolution of bioluminescent color for Pyrophorus click beetles
    Jeffrey L Feder
    Department of Biological Sciences, University of Notre Dame, Notre Dame, Indiana 46556, USA
    Evolution 63:1203-16. 2009
    ..We also explore whether intergenic exchange may commonly create novel variation and the potential for cyclic evolution in other multigene family systems...
  4. pmc Mayr, Dobzhansky, and Bush and the complexities of sympatric speciation in Rhagoletis
    Jeffrey L Feder
    Department of Biological Sciences, University of Notre Dame, Galvin Life Science Center, IN 46556 0369, USA
    Proc Natl Acad Sci U S A 102:6573-80. 2005
    ....
  5. doi request reprint Chromosomal inversions and species differences: when are genes affecting adaptive divergence and reproductive isolation expected to reside within inversions?
    Jeffrey L Feder
    Biological Sciences, University of Notre Dame, Notre Dame, Indiana 46556, USA
    Evolution 63:3061-75. 2009
    ..We also find that strong selection facilitates maintenance of divergence in a manner analogous to inversions...
  6. doi request reprint The efficacy of divergence hitchhiking in generating genomic islands during ecological speciation
    Jeffrey L Feder
    Dept of Biological Sciences, University of Notre Dame, Notre Dame, Indiana 46556, USA
    Evolution 64:1729-47. 2010
    ..Thus, speciation may often require multifarious selection acting on many, isolated and physically unlinked genes. How hitchhiking promotes further adaptive divergence warrants consideration...
  7. doi request reprint Adaptive chromosomal divergence driven by mixed geographic mode of evolution
    Jeffrey L Feder
    Department of Biological Sciences, University of Notre Dame, Notre Dame, IN 46556, USA
    Evolution 65:2157-70. 2011
    ..As inversion differences often separate closely related taxa, mixed modes of divergence could be common...
  8. pmc Allopatric genetic origins for sympatric host-plant shifts and race formation in Rhagoletis
    Jeffrey L Feder
    Department of Biological Sciences, P O Box 369, Galvin Life Science Center, University of Notre Dame, Notre Dame, IN 46556 0369, USA
    Proc Natl Acad Sci U S A 100:10314-9. 2003
    ..Thus, important raw genetic material facilitating the adaptive radiation of R. pomonella originated in a different time and place than the proximate ecological host shifts triggering sympatric divergence...
  9. pmc Evidence for inversion polymorphism related to sympatric host race formation in the apple maggot fly, Rhagoletis pomonella
    Jeffrey L Feder
    Department of Biological Sciences, University of Notre Dame, Notre Dame, Indiana 46556 0369, USA
    Genetics 163:939-53. 2003
    ..We explore whether these genomic regions (inversions) constitute coadapted gene complexes and discuss the implications of our findings for sympatric speciation in Rhagoletis...
  10. doi request reprint Sequential sympatric speciation across trophic levels
    Andrew A Forbes
    Department of Biological Sciences, University of Notre Dame, Galvin Life Sciences Building, Notre Dame, IN 46556, USA
    Science 323:776-9. 2009
    ..pomonella flies to their host plants have also quickly evolved and serve as ecological barriers to reproduction, isolating the wasps. Speciation therefore cascades as the effects of new niche construction move across trophic levels...
  11. ncbi request reprint Hawthorn-infesting populations of Rhagoletis pomonella in Mexico and speciation mode plurality
    Xianfa Xie
    Department of Biological Sciences, University of Notre Dame, Notre Dame, Indiana 46556 0369, USA
    Evolution 61:1091-105. 2007
    ....
  12. ncbi request reprint Integrating biogeographic and genetic approaches to investigate the history of bioluminescent colour alleles in the Jamaican click beetle, Pyrophorus plagiophthalamus
    Sebastian Velez
    Department of Biological Sciences, 290c Galvin Life Science Bldg, University of Notre Dame, Notre Dame, Indiana 46556, USA
    Mol Ecol 15:1393-404. 2006
    ..We discuss the implications of the results for discerning ecological causation in the adaptive sequence from nucleotide to landscape to population change for bioluminescent colour...
  13. ncbi request reprint Ecological adaptation and reproductive isolation in sympatry: genetic and phenotypic evidence for native host races of Rhagoletis pomonella
    Thomas H Q Powell
    Department of Biological Sciences, University of Notre Dame, Galvin Life Sciences Building, Notre Dame, IN, 46556, USA
    Mol Ecol 23:688-704. 2014
    ..The results provide an example of host shifting and ecological divergence involving native plants and imply that speciation with gene flow may be commonly initiated in Rhagoletis when ecological opportunity presents itself...
  14. ncbi request reprint The genetic structure of hawthorn-infesting Rhagoletis pomonella populations in Mexico: implications for sympatric host race formation
    Andrew P Michel
    Department of Biological Sciences, PO Box 369, Galvin Life Sciences Building, University of Notre Dame, Notre Dame, IN 46556 0369, USA
    Mol Ecol 16:2867-78. 2007
    ..Indeed, the microsatellite data suggest that the current US population may represent a range expansion from the northern SMO. We discuss the implications of these findings for sympatric race formation in Rhagoletis and speciation theory...
  15. doi request reprint Genetic divergence along the speciation continuum: the transition from host race to species in rhagoletis (Diptera: tephritidae)
    Thomas H Q Powell
    Department of Biological Sciences, University of Notre Dame, 290C Galvin Life Sciences Building, Notre Dame, Indiana, 46556
    Evolution 67:2561-76. 2013
    ....
  16. ncbi request reprint The genetic basis for fruit odor discrimination in Rhagoletis flies and its significance for sympatric host shifts
    Hattie R Dambroski
    Department of Biological Sciences, University of Notre Dame, Notre Dame, Indiana 46556 0369, USA
    Evolution 59:1953-64. 2005
    ..We explore the implications of our findings for the evolutionary dynamics of sympatric host race formation and speciation...
  17. pmc Darwinian natural selection for orange bioluminescent color in a Jamaican click beetle
    Uwe Stolz
    Department of Biological Sciences, P O Box 369, Galvin Life Science Center, University of Notre Dame, Notre Dame, IN 46556 0369, USA
    Proc Natl Acad Sci U S A 100:14955-9. 2003
    ..Thus, the current luciferase polymorphism for P. plagiophthalamus appears to be mirroring the long-term anagenic trend on Jamaica, revealing a possible ongoing adaptive color transition in progress...
  18. pmc Widespread genomic divergence during sympatric speciation
    Andrew P Michel
    Department of Biological Sciences, University of Notre Dame, South Bend, IN 46556 0369, USA
    Proc Natl Acad Sci U S A 107:9724-9. 2010
    ..These results highlight how the individual genes driving speciation can be embedded within an actively diverging genome...
  19. doi request reprint A field test for host fruit odour discrimination and avoidance behaviour for Rhagoletis pomonella flies in the western United States
    S B Sim
    Department of Biological Sciences, Galvin Life Sciences Building, University of Notre Dame, Notre Dame, IN, USA
    J Evol Biol 25:961-71. 2012
    ..In addition, the rapid evolution of avoidance behaviour appears to be a general phenomenon for R. pomonella during host shifts, as the eastern apple and downy hawthorn host races also are antagonized by non-natal fruit volatiles...
  20. ncbi request reprint Genetic identification of an unknown Rhagoletis fruit fly (Diptera: Tephritidae) infesting Chinese crabapple: implications for apple pest management
    Gilbert St Jean
    Department of Biological Sciences, Calvin Life Sciences Bldg, University of Notre Dame, Notre Dame, IN 46556, USA
    J Econ Entomol 106:1511-5. 2013
    ..We discuss current ongoing efforts to develop rapid, accurate, and inexpensive on site DNA-based detection tools for R. pomonella that would have general applicability for the control of pest insects...
  21. ncbi request reprint On the scent of standing variation for speciation: behavioral evidence for native sympatric host races of Rhagoletis pomonella (Diptera: Tephritidae) in the southern United States
    Thomas H Q Powell
    Department of Biological Sciences, University of Notre Dame, Notre Dame, Indiana 46556, USA
    Evolution 66:2739-56. 2012
    ..pomonella may evolve novel combinations of agonist and antagonist responses to volatiles to use new fruit resources...
  22. ncbi request reprint Herbivorous insects: model systems for the comparative study of speciation ecology
    Daniel J Funk
    Department of Biological Sciences, Vanderbilt University, Nashville, TN 37232, USA
    Genetica 116:251-67. 2002
    ....
  23. pmc Conservation in a cup of water: estimating biodiversity and population abundance from environmental DNA
    David M Lodge
    Environmental Change Initiative, University of Notre Dame, Notre Dame, IN 46556, USA
    Mol Ecol 21:2555-8. 2012
    ..Overall, Thomsen et al. (2012) provide a revolutionary roadmap for using eDNA for detection of species, estimates of relative abundance and quantification of biodiversity...
  24. pmc Patterns of genomic differentiation between ecologically differentiated M and S forms of Anopheles gambiae in West and Central Africa
    Kyanne R Reidenbach
    Department of Biological Sciences, University of Notre Dame, Notre Dame, IN, USA
    Genome Biol Evol 4:1202-12. 2012
    ....
  25. doi request reprint PERMANENT GENETIC RESOURCES: Polymorphic microsatellite loci for Diachasma alloeum (Hymenoptera: Braconidae)
    Andrew A Forbes
    Department of Biological Sciences, 107 Galvin Life Science Building, University of Notre Dame, Notre Dame, IN 46556, USA, Biology Department, Duke University, Research Drive, LSRC B333, Box 90338, Durham, NC 27708, USA
    Mol Ecol Resour 8:373-6. 2008
    ..pomonella biological control programmes. We also report the cross-species amplification of several loci for Diachasmimorpha mellea and Diachasma ferrugineum, parasitoids of R. pomonella and R. cingulata, respectively...
  26. ncbi request reprint Habitat avoidance: overlooking an important aspect of host-specific mating and sympatric speciation?
    Andrew A Forbes
    Department of Biological Sciences, P O Box 369, Galvin Life Science Center, University of Notre Dame, Notre Dame, Indiana 46556 0369, USA
    Evolution 59:1552-9. 2005
    ..Our findings reveal an underappreciated role for habitat avoidance as a potential postmating, as well as prezygotic, barrier to gene flow...
  27. ncbi request reprint Resolving a DNA sequencing artifact associated with topoisomerase I generated clones in the plasmid pCR2.1
    Andrew A Forbes
    Department of Biological Sciences, Galvin Life Science Center, University of Notre Dame, IN 46556, USA
    Biotechniques 42:458, 460, 462. 2007
  28. ncbi request reprint Importance of hybridization between indigenous and nonindigenous freshwater species: an overlooked threat to North American biodiversity
    William L Perry
    Behavior, Ecology, Evolution, and Systematic Section, Department of Biological Sciences, Illinois State University, Normal, Illinois 61790 4120, USA
    Syst Biol 51:255-75. 2002
    ..We suggest this approach may be the first step in addressing the potential threat of hybridization between many of the closely related species in North American fresh waters...
  29. pmc Genomic consequences of multiple speciation processes in a stick insect
    Patrik Nosil
    Department of Ecology and Evolutionary Biology, University of Colorado, Boulder, CO 80303, USA
    Proc Biol Sci 279:5058-65. 2012
    ..Future work could adopt experimental, mapping and functional approaches to directly test which genetic regions are affected by selection and determine their physical location in the genome...
  30. pmc Molecular detection of invasive species in heterogeneous mixtures using a microfluidic carbon nanotube platform
    Andrew R Mahon
    Department of Biological Sciences, Center for Aquatic Conservation, The University of Notre Dame, Notre Dame, Indiana, United States of America
    PLoS ONE 6:e17280. 2011
    ..With further refinement for on-board application, the technology could lead to real-time ballast water screening to improve ship-specific management and control decisions...
  31. pmc Postzygotic isolating factor in sympatric speciation in Rhagoletis flies: reduced response of hybrids to parental host-fruit odors
    Charles E Linn
    Department of Entomology, Barton Laboratory, New York State Agricultural Experiment Station, Cornell University, Geneva, NY 14456, USA
    Proc Natl Acad Sci U S A 101:17753-8. 2004
    ..Therefore, host-specific mating may play a dual role as an important postzygotic as well as a premating reproductive barrier to isolate sympatric Rhagoletis flies...
  32. ncbi request reprint Receptor expression and sympatric speciation: unique olfactory receptor neuron responses in F1 hybrid Rhagoletis populations
    Shannon B Olsson
    Department of Entomology, Barton Lab, NYSAES, Cornell University, Geneva, NY 14456, USA
    J Exp Biol 209:3729-41. 2006
    ....
  33. ncbi request reprint Speciation genetics: evolving approaches
    Mohamed A F Noor
    DCMB Group Biology Department, Duke University, Box 91000, Durham, North Carolina 27708, USA
    Nat Rev Genet 7:851-61. 2006
    ....
  34. pmc Fruit odor discrimination and sympatric host race formation in Rhagoletis
    Charles Linn
    Department of Entomology, New York State Agricultural Experimental Station, Cornell University, Geneva, NY 14456, USA
    Proc Natl Acad Sci U S A 100:11490-3. 2003
    ..We have therefore identified a key and recently evolved (<150 years) mechanism responsible for host choice in R. pomonella bearing directly on sympatric host race formation and speciation...
  35. ncbi request reprint Sympatric speciation in phytophagous insects: moving beyond controversy?
    Stewart H Berlocher
    Department of Entomology, University of Illinois, 320 Morrill Hall, 505 S Goodwin Avenue, Urbana, Illinois 61801, USA
    Annu Rev Entomol 47:773-815. 2002
    ..Our conclusion is that sympatric speciation is a viable hypothesis. We highlight areas where more thorough testing is needed to move sympatric speciation into the realm of accepted scientific theory...