Manhong Dai

Summary

Affiliation: University of Michigan
Country: USA

Publications

  1. pmc NGSQC: cross-platform quality analysis pipeline for deep sequencing data
    Manhong Dai
    Department of Psychiatry, University of Michigan, Ann Arbor, MI 48109, USA
    BMC Genomics 11:S7. 2010
  2. pmc Open Biomedical Ontology-based Medline exploration
    Weijian Xuan
    Psychiatry Department and Molecular and Behavioral Neuroscience Institute, University of Michigan, USA
    BMC Bioinformatics 10:S6. 2009
  3. pmc Cross-domain neurobiology data integration and exploration
    Weijian Xuan
    Psychiatry Department and Molecular and Behavioral Neuroscience Institute, University of Michigan, USA
    BMC Genomics 11:S6. 2010
  4. pmc Human Endogenous Retrovirus Type K (HERV-K) Particles Package and Transmit HERV-K-Related Sequences
    Rafael Contreras-Galindo
    Department of Internal Medicine, University of Michigan, Ann Arbor, Michigan, USA
    J Virol 89:7187-201. 2015
  5. ncbi request reprint An active visual search interface for Medline
    Weijian Xuan
    Molecular and Behavioral Neuroscience Institute and Department of Psychiatry, University of Michigan, Ann Arbor, MI 48109, USA
    Comput Syst Bioinformatics Conf 6:359-69. 2007
  6. ncbi request reprint SNP Function Portal: a web database for exploring the function implication of SNP alleles
    Pinglang Wang
    Molecular and Behavioral Neuroscience Institute and Department of Psychiatry, University of Michigan, Ann Arbor, MI 48109, USA
    Bioinformatics 22:e523-9. 2006
  7. pmc Regulation of the human endogenous retrovirus K (HML-2) transcriptome by the HIV-1 Tat protein
    Marta J Gonzalez-Hernandez
    Department of Internal Medicine, University of Michigan, Ann Arbor, Michigan, USA Program in Immunology, University of Michigan, Ann Arbor, Michigan, USA
    J Virol 88:8924-35. 2014
  8. ncbi request reprint Supercomputing with toys: harnessing the power of NVIDIA 8800GTX and playstation 3 for bioinformatics problem
    Justin Wilson
    Molecular and Behavioral Neuroscience Institute and Department of Psychiatry, University of Michigan, Ann Arbor, MI 48109, USA
    Comput Syst Bioinformatics Conf 6:387-90. 2007
  9. pmc HIV infection reveals widespread expansion of novel centromeric human endogenous retroviruses
    Rafael Contreras-Galindo
    Department of Internal Medicine, and Programs in Immunology, Cancer Biology, and Cellular and Molecular Biology, University of Michigan, Ann Arbor, Michigan 48109, USA
    Genome Res 23:1505-13. 2013
  10. pmc Massively parallel enzyme kinetics reveals the substrate recognition landscape of the metalloprotease ADAMTS13
    Colin A Kretz
    Life Sciences Institute, University of Michigan, Ann Arbor, MI 48109
    Proc Natl Acad Sci U S A 112:9328-33. 2015

Collaborators

Detail Information

Publications12

  1. pmc NGSQC: cross-platform quality analysis pipeline for deep sequencing data
    Manhong Dai
    Department of Psychiatry, University of Michigan, Ann Arbor, MI 48109, USA
    BMC Genomics 11:S7. 2010
    ....
  2. pmc Open Biomedical Ontology-based Medline exploration
    Weijian Xuan
    Psychiatry Department and Molecular and Behavioral Neuroscience Institute, University of Michigan, USA
    BMC Bioinformatics 10:S6. 2009
    ....
  3. pmc Cross-domain neurobiology data integration and exploration
    Weijian Xuan
    Psychiatry Department and Molecular and Behavioral Neuroscience Institute, University of Michigan, USA
    BMC Genomics 11:S6. 2010
    ..However, existing solutions do not provide sufficient support for linking molecular level data to neuroanatomical structures, which is critical for understanding high level neurobiological functions...
  4. pmc Human Endogenous Retrovirus Type K (HERV-K) Particles Package and Transmit HERV-K-Related Sequences
    Rafael Contreras-Galindo
    Department of Internal Medicine, University of Michigan, Ann Arbor, Michigan, USA
    J Virol 89:7187-201. 2015
    ..Whether transient transmission of modern HK2 sequences, which encode two putative oncoproteins, can lead to disease remains to be studied...
  5. ncbi request reprint An active visual search interface for Medline
    Weijian Xuan
    Molecular and Behavioral Neuroscience Institute and Department of Psychiatry, University of Michigan, Ann Arbor, MI 48109, USA
    Comput Syst Bioinformatics Conf 6:359-69. 2007
    ..Our solution, PubViz, is based on the FLEX platform designed for interactive web applications and its prototype is publicly available at: http://brainarray.mbni.med.umich.edu/Brainarray/DataMining/PubViz...
  6. ncbi request reprint SNP Function Portal: a web database for exploring the function implication of SNP alleles
    Pinglang Wang
    Molecular and Behavioral Neuroscience Institute and Department of Psychiatry, University of Michigan, Ann Arbor, MI 48109, USA
    Bioinformatics 22:e523-9. 2006
    ....
  7. pmc Regulation of the human endogenous retrovirus K (HML-2) transcriptome by the HIV-1 Tat protein
    Marta J Gonzalez-Hernandez
    Department of Internal Medicine, University of Michigan, Ann Arbor, Michigan, USA Program in Immunology, University of Michigan, Ann Arbor, Michigan, USA
    J Virol 88:8924-35. 2014
    ..Quantitative reverse transcription-PCR validation of the sequencing data was performed on Tat-treated PBLs of seven donors using provirus-specific primers and corroborated the results with a substantial degree of quantitative similarity...
  8. ncbi request reprint Supercomputing with toys: harnessing the power of NVIDIA 8800GTX and playstation 3 for bioinformatics problem
    Justin Wilson
    Molecular and Behavioral Neuroscience Institute and Department of Psychiatry, University of Michigan, Ann Arbor, MI 48109, USA
    Comput Syst Bioinformatics Conf 6:387-90. 2007
    ..Our initial results suggest that game hardware is a cost-effective platform for some computationally demanding bioinformatics problems...
  9. pmc HIV infection reveals widespread expansion of novel centromeric human endogenous retroviruses
    Rafael Contreras-Galindo
    Department of Internal Medicine, and Programs in Immunology, Cancer Biology, and Cellular and Molecular Biology, University of Michigan, Ann Arbor, Michigan 48109, USA
    Genome Res 23:1505-13. 2013
    ..Further, this work is an example of the potential to discover previously unknown genomic sequences through the analysis of nucleic acids found in the blood of patients. ..
  10. pmc Massively parallel enzyme kinetics reveals the substrate recognition landscape of the metalloprotease ADAMTS13
    Colin A Kretz
    Life Sciences Institute, University of Michigan, Ann Arbor, MI 48109
    Proc Natl Acad Sci U S A 112:9328-33. 2015
    ..These data provided empirical evidence for the propensity for epistasis within VWF and showed strong correlation to conservation across orthologs, highlighting evolutionary selective pressures for VWF. ..
  11. ncbi request reprint Web-based GeneChip analysis system for large-scale collaborative projects
    Manhong Dai
    Department of Psychiatry, Molecular and Behavioral Neuroscience Institute, University of Michigan, Ann Arbor, MI 48109, USA
    Bioinformatics 23:2185-7. 2007
    ..It also incorporates unique functions and resources for more accurate and flexible GeneChip analysis. Availability: WGAS is freely available at: http://arrayanalysis.mbni.med.umich.edu/arrayanalysis.html...
  12. pmc Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data
    Manhong Dai
    Molecular and Behavioural Neuroscience Institute and Department of Psychiatry, University of Michigan, Ann Arbor, MI 48109, USA
    Nucleic Acids Res 33:e175. 2005
    ..It will be beneficial to re-analyze existing GeneChip data with updated probe set definitions...