Joseph D Coolon

Summary

Affiliation: University of Michigan
Country: USA

Publications

  1. pmc Long-term nitrogen amendment alters the diversity and assemblage of soil bacterial communities in tallgrass prairie
    Joseph D Coolon
    Division of Biology, Kansas State University, Ecological Genomics Institute, Manhattan, Kansas, United States of America
    PLoS ONE 8:e67884. 2013
  2. pmc Genomic imprinting absent in Drosophila melanogaster adult females
    Joseph D Coolon
    Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, MI 48109, USA
    Cell Rep 2:69-75. 2012
  3. ncbi request reprint Molecular approach for assessing responses of microbial-feeding nematodes to burning and chronic nitrogen enrichment in a native grassland
    Kenneth L Jones
    Division of Biology, Kansas State University, Manhattan, Kansas, USA
    Mol Ecol 15:2601-9. 2006
  4. pmc Tempo and mode of regulatory evolution in Drosophila
    Joseph D Coolon
    University of Michigan, Department of Ecology and Evolutionary Biology, Ann Arbor, Michigan 48109, USA
    Genome Res 24:797-808. 2014
  5. pmc Caenorhabditis elegans genomic response to soil bacteria predicts environment-specific genetic effects on life history traits
    Joseph D Coolon
    Ecological Genomics Institute, Kansas State University, Manhattan, KS, USA
    PLoS Genet 5:e1000503. 2009
  6. pmc Sex-specific effects of cis-regulatory variants in Drosophila melanogaster
    Joseph D Coolon
    Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, Michigan 48109
    Genetics 195:1419-22. 2013
  7. doi request reprint Microbial ecological response of the intestinal flora of Peromyscus maniculatus and P. leucopus to heavy metal contamination
    Joseph D Coolon
    Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, 48109, USA
    Mol Ecol 19:67-80. 2010
  8. pmc Sources of bias in measures of allele-specific expression derived from RNA-seq data aligned to a single reference genome
    Kraig R Stevenson
    Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI 48109, USA
    BMC Genomics 14:536. 2013

Collaborators

Detail Information

Publications8

  1. pmc Long-term nitrogen amendment alters the diversity and assemblage of soil bacterial communities in tallgrass prairie
    Joseph D Coolon
    Division of Biology, Kansas State University, Ecological Genomics Institute, Manhattan, Kansas, United States of America
    PLoS ONE 8:e67884. 2013
    ..Our results show that soil nitrogen enrichment can significantly alter bacterial community diversity, structure, and individual taxa abundance, which have important implications for both managed and natural grassland ecosystems. ..
  2. pmc Genomic imprinting absent in Drosophila melanogaster adult females
    Joseph D Coolon
    Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, MI 48109, USA
    Cell Rep 2:69-75. 2012
    ..Elucidating sources of false-positive signals for imprinting in allele-specific RNA-seq data, as done here, is critical given the growing popularity of this method for identifying imprinted genes...
  3. ncbi request reprint Molecular approach for assessing responses of microbial-feeding nematodes to burning and chronic nitrogen enrichment in a native grassland
    Kenneth L Jones
    Division of Biology, Kansas State University, Manhattan, Kansas, USA
    Mol Ecol 15:2601-9. 2006
    ..Thus, if nematodes are to be used as indicators of environmental change, care should be taken to assess the response at the lowest taxonomic level possible...
  4. pmc Tempo and mode of regulatory evolution in Drosophila
    Joseph D Coolon
    University of Michigan, Department of Ecology and Evolutionary Biology, Ann Arbor, Michigan 48109, USA
    Genome Res 24:797-808. 2014
    ..Taken together, this work reveals not only the rate at which gene expression evolves, but also the molecular and evolutionary mechanisms responsible for this evolution. ..
  5. pmc Caenorhabditis elegans genomic response to soil bacteria predicts environment-specific genetic effects on life history traits
    Joseph D Coolon
    Ecological Genomics Institute, Kansas State University, Manhattan, KS, USA
    PLoS Genet 5:e1000503. 2009
    ....
  6. pmc Sex-specific effects of cis-regulatory variants in Drosophila melanogaster
    Joseph D Coolon
    Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, Michigan 48109
    Genetics 195:1419-22. 2013
    ..Here we show that sex-specific effects of cis-regulatory variants are common in Drosophila. ..
  7. doi request reprint Microbial ecological response of the intestinal flora of Peromyscus maniculatus and P. leucopus to heavy metal contamination
    Joseph D Coolon
    Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, 48109, USA
    Mol Ecol 19:67-80. 2010
    ..Whether this replacement provided similar ecosystem services as ancestral bacterial communities is unknown...
  8. pmc Sources of bias in measures of allele-specific expression derived from RNA-seq data aligned to a single reference genome
    Kraig R Stevenson
    Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI 48109, USA
    BMC Genomics 14:536. 2013
    ..To improve accuracy of ASE measured using a single reference genome, we identified properties of differentiating sites responsible for biased measures of relative ASE...