Affiliation: University of California
- Reference based annotation with GeneMapperSourav Chatterji
Department of Computer Science, University of California at Berkeley, Berkeley, CA 94720, USA
Genome Biol 7:R29. 2006..GeneMapper uses a profile based approach for mapping genes into multiple species, improving upon the standard pairwise approach. GeneMapper is freely available for academic use...
- Large multiple organism gene finding by collapsed Gibbs samplingSourav Chatterji
Department of Computer Science, University of California at Berkeley, Berkeley, CA 94720
J Comput Biol 12:599-608. 2005..It can also be seamlessly integrated with Gibbs sampling motif detection methods...
- Prediction of Saccharomyces cerevisiae replication originsAdam M Breier
Graduate Group in Biophysics, University of California-Berkeley, Berkeley, CA 94720-3204, USA
Genome Biol 5:R22. 2004..Oriscan detected most origins in the genome, demonstrating previously unrecognized generality in yeast replication origins and significant discriminatory power in the algorithm...
- Genome sequence of the Brown Norway rat yields insights into mammalian evolutionRichard A Gibbs
Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, MS BCM226, One Baylor Plaza, Houston, Texas 77030, USA <http://www.hgsc.bcm.tmc.edu
Nature 428:493-521. 2004....
- Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolutionLadeana W Hillier
Genome Sequencing Center, Washington University School of Medicine, Campus Box 8501, 4444 Forest Park Avenue, St Louis, Missouri 63108, USA
Nature 432:695-716. 2004..The distinctive properties of avian microchromosomes, together with the inferred patterns of conserved synteny, provide additional insights into vertebrate chromosome architecture...
- Evolution of genes and genomes on the Drosophila phylogenyAndrew G Clark
Department of Molecular Biology and Genetics, Cornell University, Ithaca, New York 14853, USA
Nature 450:203-18. 2007..These may prove to underlie differences in the ecology and behaviour of these diverse species...