Patricia P Chan

Summary

Affiliation: University of California
Country: USA

Publications

  1. pmc Discovery of permuted and recently split transfer RNAs in Archaea
    Patricia P Chan
    Department of Biomolecular Engineering, University of California Santa Cruz, 1156 High Street, Santa Cruz, CA 95064, USA
    Genome Biol 12:R38. 2011
  2. ncbi request reprint Reclassification of Thermoproteus neutrophilus Stetter and Zillig 1989 as Pyrobaculum neutrophilum comb. nov. based on phylogenetic analysis
    Patricia P Chan
    Department of Biomolecular Engineering, University of California, Santa Cruz, 1156 High Street, SOE 2, Santa Cruz, CA 95064, USA
    Int J Syst Evol Microbiol 63:751-4. 2013
  3. pmc IscR Is Essential for Yersinia pseudotuberculosis Type III Secretion and Virulence
    Halie K Miller
    Department of Microbiology and Environmental Toxicology, University of California Santa Cruz, Santa Cruz, California, United States of America
    PLoS Pathog 10:e1004194. 2014
  4. pmc Modeling the Thermoproteaceae RNase P RNA
    Patricia P Chan
    Department of Biomolecular Engineering, University of California Santa Cruz, CA, USA
    RNA Biol 9:1155-60. 2012
  5. pmc Complete genome sequence of Pyrobaculum oguniense
    David L Bernick
    Biomolecular Engineering, University of California, Santa Cruz, California, USA
    Stand Genomic Sci 6:336-45. 2012
  6. pmc The UCSC Archaeal Genome Browser: 2012 update
    Patricia P Chan
    Department of Biomolecular Engineering, University of California, Santa Cruz, 1156 High Street, SOE 2, Santa Cruz, CA 95064, USA
    Nucleic Acids Res 40:D646-52. 2012

Collaborators

  • Kevin Karplus
  • David L Bernick
  • Halie K Miller
  • Todd M Lowe
  • Erin Mettert
  • James M Ragle
  • Victoria Auerbuch
  • Hector A Ramirez
  • Leah Schwiesow
  • Patricia J Kiley
  • Laura Kwuan
  • Aaron E Cozen
  • Lauren M Lui
  • Julie N Murphy
  • Joanna K C Coker

Detail Information

Publications6

  1. pmc Discovery of permuted and recently split transfer RNAs in Archaea
    Patricia P Chan
    Department of Biomolecular Engineering, University of California Santa Cruz, 1156 High Street, Santa Cruz, CA 95064, USA
    Genome Biol 12:R38. 2011
    ..Another rare type of pre-tRNA, found only in eukaryotic algae, is permuted, where the 3' half is encoded upstream of the 5' half, and must be processed to be functional...
  2. ncbi request reprint Reclassification of Thermoproteus neutrophilus Stetter and Zillig 1989 as Pyrobaculum neutrophilum comb. nov. based on phylogenetic analysis
    Patricia P Chan
    Department of Biomolecular Engineering, University of California, Santa Cruz, 1156 High Street, SOE 2, Santa Cruz, CA 95064, USA
    Int J Syst Evol Microbiol 63:751-4. 2013
    ..nov., with the type strain V24Sta(T) ( = DSM 2338(T) = JCM 9278(T)). An emended description of the genus Pyrobaculum is also presented...
  3. pmc IscR Is Essential for Yersinia pseudotuberculosis Type III Secretion and Virulence
    Halie K Miller
    Department of Microbiology and Environmental Toxicology, University of California Santa Cruz, Santa Cruz, California, United States of America
    PLoS Pathog 10:e1004194. 2014
    ..pseudotuberculosis virulence. This study presents the first characterization of Yersinia IscR and provides evidence that IscR is critical for virulence and type III secretion through direct regulation of the T3SS master regulator, LcrF. ..
  4. pmc Modeling the Thermoproteaceae RNase P RNA
    Patricia P Chan
    Department of Biomolecular Engineering, University of California Santa Cruz, CA, USA
    RNA Biol 9:1155-60. 2012
    ..Using the new model, we establish effective score detection thresholds, and detect four new RNase P RNA genes in recently completed genomes from the crenarchaeal family Thermoproteaceae...
  5. pmc Complete genome sequence of Pyrobaculum oguniense
    David L Bernick
    Biomolecular Engineering, University of California, Santa Cruz, California, USA
    Stand Genomic Sci 6:336-45. 2012
    ..Deep sequencing of a mixture of genomic DNA from multiple cells has illuminated some of the genome dynamics potentially shared with other species in this genus...
  6. pmc The UCSC Archaeal Genome Browser: 2012 update
    Patricia P Chan
    Department of Biomolecular Engineering, University of California, Santa Cruz, 1156 High Street, SOE 2, Santa Cruz, CA 95064, USA
    Nucleic Acids Res 40:D646-52. 2012
    ..We have also developed a companion resource, the Archaeal COG Browser, to provide better search and display of arCOG gene function classifications, including their phylogenetic distribution among available archaeal genomes...